Wall clock time and date at job start Tue Mar 31 2020 14:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39745 * 120.06250 * 248.61512 * 3 2 1 5 5 C 1.37833 * 120.02317 * 180.02562 * 4 3 2 6 6 C 1.38780 * 120.17098 * 359.97438 * 5 4 3 7 7 O 1.35830 * 119.92877 * 179.97438 * 6 5 4 8 8 C 1.42896 * 116.99890 * 0.02844 * 7 6 5 9 9 F 1.39899 * 109.47199 * 299.99344 * 8 7 6 10 10 F 1.39895 * 109.47262 * 60.00200 * 8 7 6 11 11 C 1.39511 * 120.14014 * 0.02562 * 6 5 4 12 12 N 1.40139 * 120.01632 * 180.02562 * 11 6 5 13 13 C 1.34777 * 120.00169 * 155.44399 * 12 11 6 14 14 O 1.21290 * 120.00139 * 354.46270 * 13 12 11 15 15 C 1.50705 * 120.00085 * 174.46989 * 13 12 11 16 16 S 1.81000 * 109.47106 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00012 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99925 * 0.02562 * 17 16 15 19 19 C 1.38788 * 119.99977 * 179.97438 * 17 16 15 20 20 N 1.31636 * 120.00341 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00332 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47263 * 89.99856 * 21 19 17 23 23 H 1.48501 * 109.47495 * 210.00304 * 21 19 17 24 24 H 1.48501 * 109.46898 * 329.99902 * 21 19 17 25 25 C 1.38325 * 119.96836 * 0.26624 * 11 6 5 26 26 H 1.07997 * 119.99315 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.90961 * 179.97438 * 5 4 3 28 28 H 1.09006 * 109.46869 * 179.97438 * 8 7 6 29 29 H 0.97007 * 119.99834 * 335.43617 * 12 11 6 30 30 H 1.08998 * 109.46607 * 299.99818 * 15 13 12 31 31 H 1.09004 * 109.47253 * 59.99369 * 15 13 12 32 32 H 0.96995 * 120.00415 * 179.97438 * 20 19 17 33 33 H 1.08002 * 120.08876 * 179.73577 * 25 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2679 0.4420 1.1262 5 6 4.6463 0.4427 1.1251 6 6 5.3431 0.0054 0.0075 7 8 6.7014 0.0087 0.0116 8 6 7.3454 0.4745 1.1991 9 9 6.9656 1.7979 1.4471 10 9 6.9683 -0.3294 2.2801 11 6 4.6515 -0.4367 -1.1206 12 7 5.3578 -0.8782 -2.2476 13 6 4.7805 -1.7375 -3.1107 14 8 3.6902 -2.2066 -2.8615 15 6 5.4899 -2.1154 -4.3855 16 16 4.4665 -3.2764 -5.3240 17 6 5.5064 -3.5402 -6.7218 18 1 6.4596 -3.0368 -6.7883 19 6 5.1010 -4.3956 -7.7367 20 7 5.8780 -4.5931 -8.7808 21 14 3.4526 -5.2668 -7.6214 22 1 2.4028 -4.4252 -8.2498 23 1 3.5310 -6.5704 -8.3283 24 1 3.1135 -5.4975 -6.1941 25 6 3.2683 -0.4342 -1.1280 26 1 2.7287 0.7826 1.9977 27 1 5.1853 0.7846 1.9964 28 1 8.4266 0.4247 1.0695 29 1 6.2622 -0.5654 -2.4065 30 1 5.6655 -1.2206 -4.9825 31 1 6.4439 -2.5848 -4.1451 32 1 5.5949 -5.1912 -9.4899 33 1 2.7309 -0.7720 -2.0019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171087433.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:30 Heat of formation + Delta-G solvation = -115.908334 kcal Electronic energy + Delta-G solvation = -24174.070351 eV Core-core repulsion = 19962.641048 eV Total energy + Delta-G solvation = -4211.429303 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.048 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.85812 -47.83672 -41.13303 -39.42674 -38.16874 -36.36785 -34.88247 -32.50615 -31.23850 -30.92756 -28.69304 -26.84888 -25.69158 -23.83100 -23.57977 -20.84855 -19.68990 -19.61363 -18.48277 -18.42122 -17.98471 -17.01882 -16.52441 -16.24110 -15.75057 -15.12954 -15.04167 -15.01865 -14.49057 -14.44872 -14.24461 -14.16974 -13.98038 -13.93762 -13.71663 -13.52811 -13.04356 -12.85941 -12.80260 -12.62270 -12.33216 -12.06862 -11.79148 -11.33680 -11.06347 -10.80184 -10.70478 -9.93343 -9.75318 -9.08848 -9.06679 -8.61557 -8.30102 -7.01800 -6.35305 -4.08848 0.37397 0.84893 1.94998 2.39101 2.44828 2.57414 2.82969 2.94746 3.07559 3.28824 3.45310 3.49357 3.56333 3.67016 3.77852 4.12107 4.26673 4.33849 4.37941 4.54550 4.72603 4.93181 5.03861 5.10497 5.27989 5.41975 5.58533 5.62695 5.83243 5.86172 6.03184 6.11759 6.59364 7.18592 7.33019 7.87463 8.07011 8.34920 9.10441 10.73776 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014890 B = 0.003088 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.966181 B = 9065.477677 C =10657.036195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.260 3.740 3 C -0.028 4.028 4 C -0.056 4.056 5 C -0.171 4.171 6 C 0.099 3.901 7 O -0.318 6.318 8 C 0.414 3.586 9 F -0.197 7.197 10 F -0.196 7.196 11 C 0.153 3.847 12 N -0.668 5.668 13 C 0.532 3.468 14 O -0.496 6.496 15 C -0.125 4.125 16 S -0.137 6.137 17 C -0.524 4.524 18 H 0.090 0.910 19 C 0.097 3.903 20 N -0.878 5.878 21 Si 0.855 3.145 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.235 1.235 25 C -0.057 4.057 26 H 0.140 0.860 27 H 0.146 0.854 28 H 0.185 0.815 29 H 0.418 0.582 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.272 0.728 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.607 13.380 22.319 26.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.055 4.055 3 C -0.033 4.033 4 C -0.078 4.078 5 C -0.190 4.190 6 C 0.052 3.948 7 O -0.235 6.235 8 C 0.324 3.676 9 F -0.179 7.179 10 F -0.177 7.177 11 C 0.057 3.943 12 N -0.314 5.314 13 C 0.320 3.680 14 O -0.369 6.369 15 C -0.275 4.275 16 S 0.090 5.910 17 C -0.671 4.671 18 H 0.108 0.892 19 C -0.112 4.112 20 N -0.515 5.515 21 Si 0.680 3.320 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.159 1.159 25 C -0.079 4.079 26 H 0.158 0.842 27 H 0.163 0.837 28 H 0.202 0.798 29 H 0.255 0.745 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.207 12.425 22.339 25.657 hybrid contribution 1.619 0.341 -0.289 1.680 sum 3.826 12.766 22.050 25.764 Atomic orbital electron populations 1.81254 1.11919 1.08541 1.07261 1.25460 0.92387 0.93762 0.93908 1.15802 0.84754 1.06581 0.96126 1.20878 0.93031 0.96832 0.97035 1.21225 0.95170 1.04923 0.97722 1.18719 0.81177 1.01097 0.93817 1.86568 1.18170 1.80678 1.38080 1.23408 0.97400 0.72211 0.74600 1.93112 1.93320 1.37460 1.93963 1.93117 1.93368 1.73803 1.57458 1.16816 0.90486 1.00900 0.86126 1.43538 1.19036 1.46314 1.22522 1.20591 0.86170 0.76845 0.84357 1.90683 1.20353 1.51085 1.74739 1.23290 1.03811 1.05067 0.95359 1.84850 1.28427 1.55120 1.22643 1.22281 1.07043 1.33378 1.04410 0.89221 1.24698 0.97404 0.95134 0.93942 1.69929 1.36980 1.36021 1.08522 0.86759 0.83893 0.79974 0.81369 1.19143 1.19839 1.15911 1.21425 0.91542 0.95907 0.99062 0.84217 0.83653 0.79835 0.74509 0.87753 0.87826 0.91836 0.81358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.07 18.54 41.84 0.78 -5.30 16 2 C 0.26 3.25 15.32 -22.47 -0.34 2.90 16 3 C -0.03 -0.30 5.74 -106.86 -0.61 -0.92 16 4 C -0.06 -0.46 9.74 -39.17 -0.38 -0.85 16 5 C -0.17 -1.40 8.23 -39.53 -0.33 -1.72 16 6 C 0.10 0.92 6.51 -38.91 -0.25 0.66 16 7 O -0.32 -2.32 9.82 -19.21 -0.19 -2.51 16 8 C 0.41 1.88 5.97 101.05 0.60 2.49 16 9 F -0.20 -1.15 15.57 2.25 0.04 -1.11 16 10 F -0.20 -1.25 15.57 2.25 0.04 -1.22 16 11 C 0.15 1.73 6.44 -83.55 -0.54 1.19 16 12 N -0.67 -7.68 5.29 -9.78 -0.05 -7.73 16 13 C 0.53 8.30 7.65 -10.98 -0.08 8.22 16 14 O -0.50 -9.35 13.03 5.55 0.07 -9.27 16 15 C -0.12 -2.15 6.16 36.01 0.22 -1.93 16 16 S -0.14 -3.25 18.55 -107.50 -1.99 -5.24 16 17 C -0.52 -14.45 10.04 30.94 0.31 -14.14 16 18 H 0.09 2.57 8.03 -52.48 -0.42 2.15 16 19 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 20 N -0.88 -25.84 13.97 55.49 0.78 -25.06 16 21 Si 0.86 21.19 27.74 -169.99 -4.72 16.48 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 25 C -0.06 -0.69 8.42 -39.00 -0.33 -1.02 16 26 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 27 H 0.15 0.99 5.07 -52.48 -0.27 0.72 16 28 H 0.19 -0.01 8.14 -51.93 -0.42 -0.44 16 29 H 0.42 3.58 8.33 -40.82 -0.34 3.24 16 30 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 31 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.17 2.43 5.78 -52.49 -0.30 2.12 16 LS Contribution 322.76 15.07 4.86 4.86 Total: -1.00 -34.15 322.76 -4.40 -38.55 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -2.18 Total: 0.00 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -1.83 Total: -2.44 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 1.50 Total: -38.09 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.12 Total: -11.78 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.07 Total: -2.33 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.72 Total: 16.48 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -1.99 Total: -5.24 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.15 -4.40 -38.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171087433.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.363 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds