Wall clock time and date at job start Tue Mar 31 2020 14:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39745 * 120.06250 * 248.61512 * 3 2 1 5 5 C 1.37833 * 120.02317 * 180.02562 * 4 3 2 6 6 C 1.38780 * 120.17098 * 359.97438 * 5 4 3 7 7 O 1.35830 * 119.92877 * 179.97438 * 6 5 4 8 8 C 1.42896 * 116.99890 * 0.02844 * 7 6 5 9 9 F 1.39899 * 109.47199 * 299.99344 * 8 7 6 10 10 F 1.39895 * 109.47262 * 60.00200 * 8 7 6 11 11 C 1.39511 * 120.14014 * 0.02562 * 6 5 4 12 12 N 1.40139 * 120.01632 * 180.02562 * 11 6 5 13 13 C 1.34777 * 120.00169 * 155.44399 * 12 11 6 14 14 O 1.21290 * 120.00139 * 354.46270 * 13 12 11 15 15 C 1.50705 * 120.00085 * 174.46989 * 13 12 11 16 16 S 1.81000 * 109.47106 * 179.97438 * 15 13 12 17 17 C 1.76201 * 100.00012 * 179.97438 * 16 15 13 18 18 H 1.08006 * 119.99925 * 0.02562 * 17 16 15 19 19 C 1.38788 * 119.99977 * 179.97438 * 17 16 15 20 20 N 1.31636 * 120.00341 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00332 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47263 * 89.99856 * 21 19 17 23 23 H 1.48501 * 109.47495 * 210.00304 * 21 19 17 24 24 H 1.48501 * 109.46898 * 329.99902 * 21 19 17 25 25 C 1.38325 * 119.96836 * 0.26624 * 11 6 5 26 26 H 1.07997 * 119.99315 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.90961 * 179.97438 * 5 4 3 28 28 H 1.09006 * 109.46869 * 179.97438 * 8 7 6 29 29 H 0.97007 * 119.99834 * 335.43617 * 12 11 6 30 30 H 1.08998 * 109.46607 * 299.99818 * 15 13 12 31 31 H 1.09004 * 109.47253 * 59.99369 * 15 13 12 32 32 H 0.96995 * 120.00415 * 179.97438 * 20 19 17 33 33 H 1.08002 * 120.08876 * 179.73577 * 25 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2679 0.4420 1.1262 5 6 4.6463 0.4427 1.1251 6 6 5.3431 0.0054 0.0075 7 8 6.7014 0.0087 0.0116 8 6 7.3454 0.4745 1.1991 9 9 6.9656 1.7979 1.4471 10 9 6.9683 -0.3294 2.2801 11 6 4.6515 -0.4367 -1.1206 12 7 5.3578 -0.8782 -2.2476 13 6 4.7805 -1.7375 -3.1107 14 8 3.6902 -2.2066 -2.8615 15 6 5.4899 -2.1154 -4.3855 16 16 4.4665 -3.2764 -5.3240 17 6 5.5064 -3.5402 -6.7218 18 1 6.4596 -3.0368 -6.7883 19 6 5.1010 -4.3956 -7.7367 20 7 5.8780 -4.5931 -8.7808 21 14 3.4526 -5.2668 -7.6214 22 1 2.4028 -4.4252 -8.2498 23 1 3.5310 -6.5704 -8.3283 24 1 3.1135 -5.4975 -6.1941 25 6 3.2683 -0.4342 -1.1280 26 1 2.7287 0.7826 1.9977 27 1 5.1853 0.7846 1.9964 28 1 8.4266 0.4247 1.0695 29 1 6.2622 -0.5654 -2.4065 30 1 5.6655 -1.2206 -4.9825 31 1 6.4439 -2.5848 -4.1451 32 1 5.5949 -5.1912 -9.4899 33 1 2.7309 -0.7720 -2.0019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171087433.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:29 Heat of formation + Delta-G solvation = -139.286461 kcal Electronic energy + Delta-G solvation = -24175.084103 eV Core-core repulsion = 19962.641048 eV Total energy + Delta-G solvation = -4212.443055 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.048 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.25860 -48.24238 -42.02838 -40.39981 -38.95521 -37.35571 -35.93108 -34.66250 -32.21947 -31.83899 -29.80640 -27.84531 -27.34663 -24.60193 -24.39407 -21.94273 -20.62960 -20.21557 -19.80460 -18.99600 -18.83600 -18.18890 -17.47211 -17.15680 -17.05274 -16.63300 -16.04613 -15.88633 -15.76219 -15.15535 -15.09783 -15.05576 -14.89449 -14.82142 -14.76191 -14.56369 -14.33438 -13.92350 -13.77591 -13.56816 -13.34478 -13.05669 -13.01768 -12.97140 -12.68994 -12.50142 -11.88060 -11.73263 -11.16694 -10.99236 -10.53503 -9.90647 -9.17524 -8.97650 -8.50957 -6.21475 -0.43468 0.03029 0.94411 1.31677 1.33891 1.41122 1.47001 1.50454 1.55945 1.81537 2.02472 2.24630 2.58648 2.67345 2.69852 2.77272 2.87859 3.47820 3.61793 3.66432 3.75576 3.84596 3.96827 4.20909 4.24156 4.44077 4.51636 4.59786 4.90783 5.09106 5.17147 5.30206 5.71747 5.80571 6.13397 6.22260 6.36559 6.94212 6.95519 8.61265 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.014890 B = 0.003088 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.966181 B = 9065.477677 C =10657.036195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.281 3.719 3 C -0.041 4.041 4 C -0.033 4.033 5 C -0.170 4.170 6 C 0.116 3.884 7 O -0.321 6.321 8 C 0.408 3.592 9 F -0.203 7.203 10 F -0.206 7.206 11 C 0.130 3.870 12 N -0.647 5.647 13 C 0.539 3.461 14 O -0.534 6.534 15 C -0.110 4.110 16 S -0.173 6.173 17 C -0.527 4.527 18 H 0.067 0.933 19 C 0.048 3.952 20 N -0.917 5.917 21 Si 0.910 3.090 22 H -0.264 1.264 23 H -0.261 1.261 24 H -0.236 1.236 25 C -0.066 4.066 26 H 0.170 0.830 27 H 0.166 0.834 28 H 0.236 0.764 29 H 0.433 0.567 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.276 0.724 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.835 14.514 24.824 29.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.034 4.034 3 C -0.045 4.045 4 C -0.054 4.054 5 C -0.189 4.189 6 C 0.069 3.931 7 O -0.238 6.238 8 C 0.320 3.680 9 F -0.185 7.185 10 F -0.187 7.187 11 C 0.034 3.966 12 N -0.294 5.294 13 C 0.326 3.674 14 O -0.410 6.410 15 C -0.261 4.261 16 S 0.053 5.947 17 C -0.674 4.674 18 H 0.085 0.915 19 C -0.158 4.158 20 N -0.555 5.555 21 Si 0.732 3.268 22 H -0.189 1.189 23 H -0.186 1.186 24 H -0.160 1.160 25 C -0.089 4.089 26 H 0.188 0.812 27 H 0.183 0.817 28 H 0.252 0.748 29 H 0.273 0.727 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.086 0.914 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.475 13.593 24.874 28.558 hybrid contribution 1.417 0.153 -0.891 1.681 sum 4.893 13.746 23.983 28.072 Atomic orbital electron populations 1.81263 1.13199 1.10381 1.08741 1.25724 0.92641 0.92421 0.92602 1.15782 0.83688 1.08252 0.96810 1.21196 0.93190 0.94291 0.96701 1.21489 0.95111 1.04344 0.97913 1.18736 0.82357 0.99032 0.92997 1.86597 1.16825 1.80542 1.39835 1.24302 0.99061 0.71358 0.73284 1.93103 1.93498 1.37979 1.93908 1.93101 1.93572 1.74118 1.57950 1.16799 0.90253 1.02784 0.86776 1.43131 1.19432 1.44946 1.21857 1.20174 0.85524 0.77353 0.84306 1.90691 1.21884 1.52909 1.75528 1.23248 1.03192 1.04020 0.95623 1.84781 1.29873 1.57878 1.22141 1.22456 1.06639 1.32528 1.05807 0.91509 1.25505 1.00461 0.96020 0.93809 1.70008 1.38764 1.37227 1.09460 0.85928 0.80106 0.79404 0.81323 1.18908 1.18554 1.15965 1.21204 0.92222 0.96698 0.98798 0.81249 0.81671 0.74817 0.72686 0.85933 0.85876 0.91406 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -13.62 18.54 19.01 0.35 -13.27 16 2 C 0.28 6.94 15.32 88.33 1.35 8.29 16 3 C -0.04 -0.83 5.74 -21.31 -0.12 -0.95 16 4 C -0.03 -0.44 9.74 22.54 0.22 -0.22 16 5 C -0.17 -2.18 8.23 22.30 0.18 -2.00 16 6 C 0.12 1.82 6.51 22.71 0.15 1.96 16 7 O -0.32 -3.52 9.82 -91.64 -0.90 -4.42 16 8 C 0.41 2.02 5.97 113.37 0.68 2.70 16 9 F -0.20 -1.59 15.57 44.97 0.70 -0.89 16 10 F -0.21 -1.86 15.57 44.97 0.70 -1.16 16 11 C 0.13 2.72 6.44 38.14 0.25 2.97 16 12 N -0.65 -13.77 5.29 -303.25 -1.60 -15.38 16 13 C 0.54 16.37 7.65 87.66 0.67 17.04 16 14 O -0.53 -20.31 13.03 -3.06 -0.04 -20.34 16 15 C -0.11 -3.68 6.16 71.24 0.44 -3.24 16 16 S -0.17 -8.26 18.55 -56.49 -1.05 -9.30 16 17 C -0.53 -29.42 10.04 67.95 0.68 -28.74 16 18 H 0.07 3.91 8.03 -2.91 -0.02 3.88 16 19 C 0.05 2.72 5.50 84.85 0.47 3.19 16 20 N -0.92 -54.70 13.97 21.65 0.30 -54.40 16 21 Si 0.91 44.11 27.74 68.60 1.90 46.01 16 22 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.24 -11.36 6.74 99.48 0.67 -10.69 16 25 C -0.07 -1.60 8.42 22.65 0.19 -1.41 16 26 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 27 H 0.17 1.54 5.07 -2.91 -0.01 1.53 16 28 H 0.24 -1.25 8.14 -2.38 -0.02 -1.27 16 29 H 0.43 6.32 8.33 -92.70 -0.77 5.54 16 30 H 0.12 3.67 8.14 -2.40 -0.02 3.65 16 31 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 32 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.14 4.24 5.78 -2.91 -0.02 4.23 16 Total: -1.00 -76.28 322.76 5.93 -70.36 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 0.40 Total: 3.20 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 5.15 Total: -0.41 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -0.95 Total: -83.04 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.94 Total: -24.76 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 1.40 Total: -2.05 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.90 Total: 46.01 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.05 Total: -9.30 kcal Total: -76.28 5.93 -70.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171087433.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.928 kcal (2) G-P(sol) polarization free energy of solvation -76.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds