Wall clock time and date at job start Tue Mar 31 2020 15:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34230 * 117.00050 * 2 1 4 4 O 1.20826 * 120.00098 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00113 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47441 * 179.97438 * 5 3 2 7 7 C 1.36927 * 120.00227 * 270.86017 * 6 5 3 8 8 H 1.07999 * 120.00617 * 141.66327 * 7 6 5 9 9 C 1.38814 * 120.00011 * 321.66163 * 7 6 5 10 10 N 1.31614 * 120.00080 * 159.55135 * 9 7 6 11 11 Si 1.86805 * 119.99934 * 339.55055 * 9 7 6 12 12 H 1.48497 * 109.46875 * 94.98137 * 11 9 7 13 13 H 1.48495 * 109.46961 * 214.98656 * 11 9 7 14 14 H 1.48505 * 109.46741 * 334.98003 * 11 9 7 15 15 C 1.46505 * 119.99426 * 90.85388 * 6 5 3 16 16 C 1.50697 * 109.47491 * 276.15135 * 15 6 5 17 17 C 1.38231 * 120.00483 * 94.69179 * 16 15 6 18 18 C 1.38223 * 120.00912 * 179.77192 * 17 16 15 19 19 N 1.48026 * 119.98422 * 180.25097 * 18 17 16 20 20 O 1.21801 * 120.00079 * 180.24935 * 19 18 17 21 21 O 1.21802 * 120.00070 * 0.25920 * 19 18 17 22 22 C 1.38257 * 120.03218 * 0.50676 * 18 17 16 23 23 C 1.38205 * 120.00933 * 359.74878 * 22 18 17 24 24 C 1.38328 * 120.00651 * 274.97442 * 16 15 6 25 25 Cl 1.73605 * 120.01509 * 359.97438 * 24 16 15 26 26 H 1.09001 * 109.47138 * 300.00182 * 1 2 3 27 27 H 1.09003 * 109.47518 * 60.00257 * 1 2 3 28 28 H 1.08997 * 109.47584 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47512 * 59.99423 * 5 3 2 30 30 H 1.09000 * 109.47130 * 299.99845 * 5 3 2 31 31 H 0.97004 * 119.99886 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.47113 * 36.15503 * 15 6 5 33 33 H 1.09001 * 109.46719 * 156.15367 * 15 6 5 34 34 H 1.08000 * 119.99717 * 0.02562 * 17 16 15 35 35 H 1.07995 * 119.99981 * 179.72188 * 22 18 17 36 36 H 1.07992 * 120.00499 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1583 3.3411 -1.1870 8 1 3.8573 4.3742 -1.2793 9 6 4.7244 2.6837 -2.2707 10 7 4.5384 3.1436 -3.4897 11 14 5.7500 1.1463 -1.9987 12 1 4.8947 -0.0557 -2.1682 13 1 6.8577 1.1091 -2.9870 14 1 6.3131 1.1636 -0.6247 15 6 4.2080 3.3770 1.2674 16 6 2.8949 3.8899 1.8000 17 6 2.1787 3.1391 2.7133 18 6 0.9766 3.6116 3.2054 19 7 0.2129 2.8097 4.1876 20 8 -0.8487 3.2237 4.6181 21 8 0.6461 1.7359 4.5656 22 6 0.4846 4.8305 2.7768 23 6 1.1972 5.5796 1.8596 24 6 2.4032 5.1095 1.3706 25 17 3.2988 6.0500 0.2185 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.9557 0.7809 -0.8907 30 1 3.9563 0.7806 0.8892 31 1 4.9336 2.6840 -4.2471 32 1 4.6477 2.6873 1.9877 33 1 4.8864 4.2146 1.1054 34 1 2.5605 2.1850 3.0455 35 1 -0.4569 5.1971 3.1582 36 1 0.8126 6.5315 1.5246 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177622367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:25 Heat of formation + Delta-G solvation = -29.322671 kcal Electronic energy + Delta-G solvation = -26870.427873 eV Core-core repulsion = 22771.797015 eV Total energy + Delta-G solvation = -4098.630858 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.07426 -39.89147 -39.35051 -36.56335 -36.44386 -36.31586 -35.29732 -32.58716 -31.57802 -31.33255 -28.71340 -26.81144 -26.31229 -26.04579 -23.03637 -22.40498 -21.31782 -20.42827 -18.74024 -18.56547 -17.43986 -17.38252 -17.01827 -16.82718 -16.27770 -15.73179 -15.63202 -15.11659 -14.68555 -14.42957 -13.78209 -13.27905 -13.21553 -12.95673 -12.78412 -12.72273 -12.29396 -12.01355 -11.71260 -11.57948 -11.54357 -11.47320 -11.21145 -11.07118 -11.01068 -10.99542 -10.50202 -10.30157 -10.22881 -9.74000 -9.68186 -9.23365 -9.00283 -8.66831 -7.27607 -6.19177 -3.69991 -0.07302 1.02515 1.43292 1.49486 2.23386 2.93898 3.11914 3.26086 3.30423 3.31907 3.35082 4.29064 4.40229 4.51434 4.69234 4.84806 4.94348 5.10856 5.20951 5.39034 5.44463 5.49346 5.51659 5.62636 5.68930 5.70391 5.78859 5.83770 5.95008 6.16692 6.23482 6.29307 6.54468 6.97757 7.68577 7.74471 8.14145 8.46951 8.71814 9.42673 9.71266 10.93405 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012770 B = 0.006119 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.046942 B = 4575.022355 C = 5889.507448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.375 6.375 3 C 0.424 3.576 4 O -0.488 6.488 5 C 0.134 3.866 6 N -0.560 5.560 7 C -0.285 4.285 8 H 0.103 0.897 9 C 0.043 3.957 10 N -0.885 5.885 11 Si 0.864 3.136 12 H -0.281 1.281 13 H -0.294 1.294 14 H -0.262 1.262 15 C 0.175 3.825 16 C -0.068 4.068 17 C -0.036 4.036 18 C -0.046 4.046 19 N 0.035 4.965 20 O -0.171 6.171 21 O -0.168 6.168 22 C -0.054 4.054 23 C -0.115 4.115 24 C 0.039 3.961 25 Cl -0.019 7.019 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.267 0.733 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 1.033 10.779 11.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.292 6.292 3 C 0.263 3.737 4 O -0.373 6.373 5 C 0.005 3.995 6 N -0.278 5.278 7 C -0.413 4.413 8 H 0.120 0.880 9 C -0.160 4.160 10 N -0.524 5.524 11 Si 0.693 3.307 12 H -0.209 1.209 13 H -0.222 1.222 14 H -0.186 1.186 15 C 0.048 3.952 16 C -0.073 4.073 17 C -0.056 4.056 18 C -0.129 4.129 19 N 0.553 4.447 20 O -0.386 6.386 21 O -0.383 6.383 22 C -0.073 4.073 23 C -0.134 4.134 24 C 0.010 3.990 25 Cl 0.011 6.989 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.166 0.834 35 H 0.170 0.830 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.432 1.829 9.972 10.703 hybrid contribution -0.221 -1.085 -0.071 1.109 sum -3.653 0.744 9.900 10.579 Atomic orbital electron populations 1.23035 0.78482 1.02520 1.01632 1.86604 1.22045 1.35677 1.84888 1.26319 0.94148 0.80994 0.72272 1.90579 1.66671 1.36191 1.43816 1.21393 0.85506 0.89329 1.03239 1.43950 1.73848 1.07440 1.02597 1.19204 1.36482 0.99069 0.86499 0.87970 1.25493 0.97425 0.97812 0.95244 1.69842 1.43380 1.41289 0.97865 0.87138 0.81352 0.83553 0.78701 1.20902 1.22152 1.18592 1.20169 0.89495 0.97788 0.87702 1.20866 1.00760 0.91909 0.93721 1.20750 0.91071 0.99762 0.93999 1.21040 0.96574 0.95623 0.99691 1.43630 1.00432 1.00656 1.00000 1.94498 1.10047 1.74748 1.59270 1.94522 1.72730 1.09061 1.61962 1.20768 1.00095 0.91276 0.95202 1.20995 0.93592 1.01316 0.97519 1.21209 0.93129 0.93103 0.91519 1.98439 1.73529 1.70738 1.56179 0.93121 0.92487 0.89048 0.88663 0.89577 0.92302 0.92073 0.88793 0.83442 0.83007 0.83260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.56 101.05 1.07 1.64 16 2 O -0.38 -6.89 10.56 -39.26 -0.41 -7.31 16 3 C 0.42 8.60 7.75 36.01 0.28 8.88 16 4 O -0.49 -10.83 13.92 -18.75 -0.26 -11.10 16 5 C 0.13 2.64 5.14 -5.19 -0.03 2.62 16 6 N -0.56 -11.63 1.64 -175.98 -0.29 -11.92 16 7 C -0.28 -7.03 9.66 -15.06 -0.15 -7.18 16 8 H 0.10 2.66 5.28 -52.49 -0.28 2.38 16 9 C 0.04 1.11 5.34 -17.43 -0.09 1.02 16 10 N -0.88 -25.11 13.97 55.49 0.78 -24.34 16 11 Si 0.86 19.61 24.96 -169.99 -4.24 15.37 16 12 H -0.28 -6.28 6.68 56.52 0.38 -5.90 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 15 C 0.17 2.94 5.40 -5.19 -0.03 2.91 16 16 C -0.07 -1.10 4.05 -104.59 -0.42 -1.52 16 17 C -0.04 -0.55 8.14 -39.59 -0.32 -0.87 16 18 C -0.05 -0.71 6.85 -79.94 -0.55 -1.25 16 19 N 0.04 0.58 4.45 33.97 0.15 0.73 16 20 O -0.17 -2.77 18.45 -29.46 -0.54 -3.32 16 21 O -0.17 -2.81 18.45 -29.46 -0.54 -3.36 16 22 C -0.05 -0.73 9.55 -39.59 -0.38 -1.10 16 23 C -0.11 -1.55 9.83 -39.54 -0.39 -1.94 16 24 C 0.04 0.61 6.31 -39.50 -0.25 0.36 16 25 Cl -0.02 -0.31 24.61 -51.86 -1.28 -1.59 16 26 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 27 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 28 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.10 2.05 3.17 -51.93 -0.16 1.88 16 30 H 0.09 1.38 7.94 -51.93 -0.41 0.97 16 31 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.06 0.86 7.89 -51.93 -0.41 0.45 16 33 H 0.09 1.56 6.97 -51.93 -0.36 1.19 16 34 H 0.15 2.12 7.61 -52.49 -0.40 1.72 16 35 H 0.15 1.71 7.61 -52.49 -0.40 1.31 16 36 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 327.71 15.07 4.94 4.94 Total: -1.00 -30.24 327.71 -6.24 -36.47 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -3.27 Total: 1.85 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -1.26 Total: 3.56 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.64 Total: -35.53 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -1.76 Total: -25.08 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.24 Total: 15.37 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.28 Total: -1.59 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.24 -6.24 -36.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177622367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.151 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds