Wall clock time and date at job start Tue Mar 31 2020 15:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34230 * 117.00050 * 2 1 4 4 O 1.20826 * 120.00098 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00113 * 180.02562 * 3 2 1 6 6 N 1.46501 * 109.47441 * 179.97438 * 5 3 2 7 7 C 1.36927 * 120.00227 * 270.86017 * 6 5 3 8 8 H 1.07999 * 120.00617 * 141.66327 * 7 6 5 9 9 C 1.38814 * 120.00011 * 321.66163 * 7 6 5 10 10 N 1.31614 * 120.00080 * 159.55135 * 9 7 6 11 11 Si 1.86805 * 119.99934 * 339.55055 * 9 7 6 12 12 H 1.48497 * 109.46875 * 94.98137 * 11 9 7 13 13 H 1.48495 * 109.46961 * 214.98656 * 11 9 7 14 14 H 1.48505 * 109.46741 * 334.98003 * 11 9 7 15 15 C 1.46505 * 119.99426 * 90.85388 * 6 5 3 16 16 C 1.50697 * 109.47491 * 276.15135 * 15 6 5 17 17 C 1.38231 * 120.00483 * 94.69179 * 16 15 6 18 18 C 1.38223 * 120.00912 * 179.77192 * 17 16 15 19 19 N 1.48026 * 119.98422 * 180.25097 * 18 17 16 20 20 O 1.21801 * 120.00079 * 180.24935 * 19 18 17 21 21 O 1.21802 * 120.00070 * 0.25920 * 19 18 17 22 22 C 1.38257 * 120.03218 * 0.50676 * 18 17 16 23 23 C 1.38205 * 120.00933 * 359.74878 * 22 18 17 24 24 C 1.38328 * 120.00651 * 274.97442 * 16 15 6 25 25 Cl 1.73605 * 120.01509 * 359.97438 * 24 16 15 26 26 H 1.09001 * 109.47138 * 300.00182 * 1 2 3 27 27 H 1.09003 * 109.47518 * 60.00257 * 1 2 3 28 28 H 1.08997 * 109.47584 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47512 * 59.99423 * 5 3 2 30 30 H 1.09000 * 109.47130 * 299.99845 * 5 3 2 31 31 H 0.97004 * 119.99886 * 180.02562 * 10 9 7 32 32 H 1.08999 * 109.47113 * 36.15503 * 15 6 5 33 33 H 1.09001 * 109.46719 * 156.15367 * 15 6 5 34 34 H 1.08000 * 119.99717 * 0.02562 * 17 16 15 35 35 H 1.07995 * 119.99981 * 179.72188 * 22 18 17 36 36 H 1.07992 * 120.00499 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1583 3.3411 -1.1870 8 1 3.8573 4.3742 -1.2793 9 6 4.7244 2.6837 -2.2707 10 7 4.5384 3.1436 -3.4897 11 14 5.7500 1.1463 -1.9987 12 1 4.8947 -0.0557 -2.1682 13 1 6.8577 1.1091 -2.9870 14 1 6.3131 1.1636 -0.6247 15 6 4.2080 3.3770 1.2674 16 6 2.8949 3.8899 1.8000 17 6 2.1787 3.1391 2.7133 18 6 0.9766 3.6116 3.2054 19 7 0.2129 2.8097 4.1876 20 8 -0.8487 3.2237 4.6181 21 8 0.6461 1.7359 4.5656 22 6 0.4846 4.8305 2.7768 23 6 1.1972 5.5796 1.8596 24 6 2.4032 5.1095 1.3706 25 17 3.2988 6.0500 0.2185 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.9557 0.7809 -0.8907 30 1 3.9563 0.7806 0.8892 31 1 4.9336 2.6840 -4.2471 32 1 4.6477 2.6873 1.9877 33 1 4.8864 4.2146 1.1054 34 1 2.5605 2.1850 3.0455 35 1 -0.4569 5.1971 3.1582 36 1 0.8126 6.5315 1.5246 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177622367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:25 Heat of formation + Delta-G solvation = -45.598383 kcal Electronic energy + Delta-G solvation = -26871.133640 eV Core-core repulsion = 22771.797015 eV Total energy + Delta-G solvation = -4099.336626 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.30758 -41.34826 -40.60921 -38.03003 -37.72115 -37.57536 -36.85794 -34.18527 -32.93871 -32.69728 -30.16148 -28.10889 -27.65524 -27.51902 -24.43256 -23.70422 -22.65815 -21.96707 -19.97630 -19.82606 -19.03788 -18.68002 -18.59957 -17.99711 -17.81042 -17.18652 -16.94038 -16.72374 -16.00225 -15.78411 -14.98273 -14.82468 -14.53296 -14.51185 -14.24268 -13.97683 -13.85563 -13.34902 -13.11208 -12.95571 -12.86566 -12.79398 -12.58211 -12.53973 -12.33976 -12.27939 -12.06329 -11.83924 -11.71512 -11.35174 -11.34046 -10.72554 -10.32650 -10.12555 -8.97796 -8.14055 -5.62327 -1.29283 -0.10527 0.20998 0.28520 1.01594 1.32623 1.37301 1.48438 1.58063 1.86909 2.13407 2.44074 3.05874 3.29631 3.31727 3.41959 3.69802 3.80902 4.04351 4.14020 4.20111 4.25185 4.28480 4.31951 4.38858 4.54897 4.56032 4.61612 4.65593 4.91298 4.97514 5.09614 5.35604 5.49530 5.90242 6.33487 6.48178 6.77898 7.02208 7.54727 7.89449 9.01897 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012770 B = 0.006119 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.046942 B = 4575.022355 C = 5889.507448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.377 6.377 3 C 0.424 3.576 4 O -0.513 6.513 5 C 0.128 3.872 6 N -0.571 5.571 7 C -0.262 4.262 8 H 0.083 0.917 9 C -0.018 4.018 10 N -0.942 5.942 11 Si 0.919 3.081 12 H -0.277 1.277 13 H -0.312 1.312 14 H -0.233 1.233 15 C 0.170 3.830 16 C -0.078 4.078 17 C -0.035 4.035 18 C -0.057 4.057 19 N 0.036 4.964 20 O -0.168 6.168 21 O -0.185 6.185 22 C -0.045 4.045 23 C -0.110 4.110 24 C 0.025 3.975 25 Cl -0.033 7.033 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.130 0.870 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.261 0.739 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.178 0.822 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 0.084 12.919 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.293 6.293 3 C 0.264 3.736 4 O -0.400 6.400 5 C 0.000 4.000 6 N -0.290 5.290 7 C -0.391 4.391 8 H 0.100 0.900 9 C -0.215 4.215 10 N -0.586 5.586 11 Si 0.747 3.253 12 H -0.204 1.204 13 H -0.240 1.240 14 H -0.155 1.155 15 C 0.046 3.954 16 C -0.082 4.082 17 C -0.055 4.055 18 C -0.140 4.140 19 N 0.552 4.448 20 O -0.384 6.384 21 O -0.396 6.396 22 C -0.064 4.064 23 C -0.129 4.129 24 C -0.003 4.003 25 Cl -0.004 7.004 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.149 0.851 29 H 0.098 0.902 30 H 0.147 0.853 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.175 0.825 35 H 0.195 0.805 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.009 0.834 12.184 12.854 hybrid contribution -0.209 -0.725 -0.634 0.986 sum -4.218 0.109 11.550 12.297 Atomic orbital electron populations 1.23298 0.76550 1.04973 1.01075 1.86566 1.23847 1.34503 1.84409 1.26301 0.94486 0.81107 0.71685 1.90569 1.67279 1.37052 1.45062 1.21465 0.85376 0.88728 1.04451 1.43985 1.74470 1.07849 1.02695 1.19229 1.33840 0.98448 0.87606 0.89998 1.26106 0.99196 1.01228 0.94977 1.69985 1.45993 1.43767 0.98816 0.86227 0.79302 0.80330 0.79426 1.20447 1.24033 1.15544 1.20347 0.90098 0.98305 0.86697 1.20724 1.00648 0.92326 0.94510 1.20805 0.91056 0.99966 0.93704 1.21208 0.96770 0.96204 0.99847 1.43744 1.00422 1.00631 1.00024 1.94486 1.10115 1.74624 1.59200 1.94520 1.72951 1.09549 1.62593 1.21096 1.00692 0.90361 0.94285 1.21303 0.92547 1.02238 0.96781 1.21461 0.93975 0.93320 0.91593 1.98437 1.74019 1.71031 1.56884 0.93334 0.93382 0.85147 0.90240 0.85295 0.92968 0.88572 0.89114 0.82519 0.80504 0.80548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 10.56 113.37 1.20 2.17 16 2 O -0.38 -12.95 10.56 -51.41 -0.54 -13.49 16 3 C 0.42 16.40 7.75 71.24 0.55 16.95 16 4 O -0.51 -22.12 13.92 21.96 0.31 -21.81 16 5 C 0.13 4.73 5.14 85.63 0.44 5.17 16 6 N -0.57 -22.73 1.64 -710.69 -1.16 -23.90 16 7 C -0.26 -12.93 9.66 84.04 0.81 -12.12 16 8 H 0.08 4.33 5.28 -2.91 -0.02 4.32 16 9 C -0.02 -0.97 5.34 84.86 0.45 -0.52 16 10 N -0.94 -55.36 13.97 21.65 0.30 -55.06 16 11 Si 0.92 40.32 24.96 68.60 1.71 42.03 16 12 H -0.28 -11.79 6.68 99.48 0.66 -11.12 16 13 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 14 H -0.23 -8.97 7.11 99.48 0.71 -8.26 16 15 C 0.17 5.36 5.40 85.63 0.46 5.82 16 16 C -0.08 -2.36 4.05 -19.85 -0.08 -2.44 16 17 C -0.04 -1.00 8.14 22.26 0.18 -0.82 16 18 C -0.06 -1.61 6.85 36.37 0.25 -1.36 16 19 N 0.04 1.09 4.45 -46.45 -0.21 0.88 16 20 O -0.17 -5.04 18.45 18.88 0.35 -4.69 16 21 O -0.18 -5.84 18.45 18.88 0.35 -5.49 16 22 C -0.04 -1.09 9.55 22.27 0.21 -0.88 16 23 C -0.11 -2.70 9.83 22.29 0.22 -2.48 16 24 C 0.02 0.74 6.31 22.32 0.14 0.88 16 25 Cl -0.03 -1.10 24.61 -2.72 -0.07 -1.17 16 26 H 0.05 1.38 8.13 -2.39 -0.02 1.36 16 27 H 0.05 1.42 8.13 -2.39 -0.02 1.41 16 28 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.08 3.24 3.17 -2.39 -0.01 3.23 16 30 H 0.13 3.60 7.94 -2.39 -0.02 3.58 16 31 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 32 H 0.10 2.34 7.89 -2.39 -0.02 2.32 16 33 H 0.09 2.88 6.97 -2.39 -0.02 2.87 16 34 H 0.16 4.08 7.61 -2.91 -0.02 4.06 16 35 H 0.18 3.35 7.61 -2.91 -0.02 3.33 16 36 H 0.18 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -66.13 327.71 6.98 -59.15 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.10 Total: 13.19 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 4.84 Total: 10.37 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -1.07 Total: -78.07 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: 0.46 Total: -45.50 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.71 Total: 42.03 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.07 Total: -1.17 kcal Total: -66.13 6.98 -59.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177622367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.552 kcal (2) G-P(sol) polarization free energy of solvation -66.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds