Wall clock time and date at job start Tue Mar 31 2020 15:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 120.00218 * 2 1 4 4 H 1.07999 * 120.00208 * 158.52201 * 3 2 1 5 5 C 1.38815 * 119.99525 * 338.52134 * 3 2 1 6 6 N 1.31625 * 119.99823 * 158.25661 * 5 3 2 7 7 Si 1.86801 * 120.00199 * 338.25917 * 5 3 2 8 8 H 1.48490 * 109.47389 * 86.11312 * 7 5 3 9 9 H 1.48503 * 109.46976 * 206.11645 * 7 5 3 10 10 H 1.48504 * 109.46759 * 326.10854 * 7 5 3 11 11 C 1.46506 * 119.99743 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.43183 * 178.91629 * 11 2 1 13 13 C 1.54625 * 110.48425 * 56.23365 * 11 2 1 14 14 C 1.54480 * 101.76199 * 266.11470 * 13 11 2 15 15 N 1.46761 * 105.47623 * 334.58622 * 14 13 11 16 16 C 1.39973 * 124.35300 * 197.03561 * 15 14 13 17 17 C 1.38885 * 120.04859 * 5.79203 * 16 15 14 18 18 C 1.38105 * 119.96835 * 180.02562 * 17 16 15 19 19 C 1.38379 * 120.06557 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 119.94564 * 179.97438 * 19 18 17 21 21 C 1.38468 * 120.10510 * 359.97438 * 19 18 17 22 22 Cl 1.73601 * 119.98421 * 180.02562 * 21 19 18 23 23 C 1.38243 * 120.03262 * 359.72159 * 21 19 18 24 24 C 1.34423 * 111.30095 * 17.01791 * 15 14 13 25 25 O 1.21286 * 124.94349 * 179.56161 * 24 15 14 26 26 H 1.08999 * 109.46916 * 93.90515 * 1 2 3 27 27 H 1.09005 * 109.47149 * 333.90307 * 1 2 3 28 28 H 1.08999 * 109.47274 * 213.90071 * 1 2 3 29 29 H 0.96998 * 119.99586 * 179.97438 * 6 5 3 30 30 H 1.08998 * 110.97091 * 24.23324 * 13 11 2 31 31 H 1.09002 * 110.96822 * 148.00389 * 13 11 2 32 32 H 1.08999 * 110.25047 * 215.58300 * 14 13 11 33 33 H 1.09001 * 110.31770 * 93.62715 * 14 13 11 34 34 H 1.08007 * 120.01681 * 359.97438 * 17 16 15 35 35 H 1.08001 * 119.96724 * 180.02562 * 18 17 16 36 36 H 1.08003 * 120.03312 * 180.27441 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1735 1.2184 0.3424 5 6 1.5280 2.3463 -0.4402 6 7 1.9844 3.5215 -0.0621 7 14 0.0434 2.2399 -1.5691 8 1 -1.1883 2.0869 -0.7540 9 1 -0.0510 3.4799 -2.3808 10 1 0.1897 1.0685 -2.4700 11 6 2.1975 -1.2688 0.0006 12 1 3.2722 -1.0878 -0.0188 13 6 1.7708 -2.1405 -1.2032 14 6 0.6628 -3.0179 -0.5796 15 7 0.9665 -3.0711 0.8553 16 6 0.4344 -4.0154 1.7408 17 6 -0.3471 -5.0576 1.2591 18 6 -0.8718 -5.9882 2.1343 19 6 -0.6201 -5.8829 3.4910 20 17 -1.2818 -7.0540 4.5885 21 6 0.1586 -4.8450 3.9744 22 17 0.4729 -4.7164 5.6769 23 6 0.6911 -3.9148 3.1014 24 6 1.8218 -2.0965 1.2098 25 8 2.2321 -1.9079 2.3355 26 1 -0.3633 -0.0700 -1.0253 27 1 -0.3634 0.9229 0.4521 28 1 -0.3634 -0.8529 0.5732 29 1 1.5501 4.3324 -0.3700 30 1 1.3729 -1.5243 -2.0094 31 1 2.6011 -2.7526 -1.5553 32 1 0.6891 -4.0198 -1.0080 33 1 -0.3151 -2.5646 -0.7416 34 1 -0.5451 -5.1398 0.2005 35 1 -1.4791 -6.7988 1.7596 36 1 1.3022 -3.1078 3.4780 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181071731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:56 Heat of formation + Delta-G solvation = 24.140104 kcal Electronic energy + Delta-G solvation = -23449.283125 eV Core-core repulsion = 19793.679752 eV Total energy + Delta-G solvation = -3655.603374 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16532 -39.08335 -36.77890 -36.68769 -36.60479 -35.35041 -32.57825 -31.25391 -30.96749 -28.83492 -27.73156 -26.04162 -23.73913 -23.39793 -22.52978 -20.78571 -19.50762 -17.88700 -17.27355 -16.88282 -16.60765 -15.93964 -15.43897 -15.10046 -14.89941 -14.24569 -14.00961 -13.92832 -13.89008 -13.46312 -13.14954 -12.85172 -12.47139 -12.43700 -12.22894 -12.08544 -12.01018 -11.92903 -11.67642 -11.22224 -11.03499 -10.99454 -10.81213 -10.33269 -10.18292 -10.02642 -9.79537 -9.51581 -9.10723 -8.78071 -8.03478 -7.31065 -6.07722 -3.46318 0.73982 0.92319 1.71895 2.03866 2.63270 2.77831 3.22823 3.33828 3.38993 3.40888 4.34601 4.39481 4.53669 4.65781 4.70213 4.74697 4.89697 5.01685 5.05600 5.12638 5.32143 5.35991 5.52474 5.64533 5.81332 5.85758 5.93880 5.95800 6.04106 6.09560 6.21217 6.29904 6.49212 6.76471 7.00574 7.66983 8.15089 8.20919 8.72141 9.53568 9.76723 11.07147 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.021788 B = 0.003358 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.801824 B = 8336.728574 C = 8813.916247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.580 5.580 3 C -0.275 4.275 4 H 0.093 0.907 5 C 0.030 3.970 6 N -0.899 5.899 7 Si 0.891 3.109 8 H -0.287 1.287 9 H -0.303 1.303 10 H -0.275 1.275 11 C 0.159 3.841 12 H 0.115 0.885 13 C -0.156 4.156 14 C 0.098 3.902 15 N -0.563 5.563 16 C 0.199 3.801 17 C -0.152 4.152 18 C -0.068 4.068 19 C -0.068 4.068 20 Cl -0.060 7.060 21 C 0.003 3.997 22 Cl -0.047 7.047 23 C -0.146 4.146 24 C 0.504 3.496 25 O -0.496 6.496 26 H 0.020 0.980 27 H 0.068 0.932 28 H 0.032 0.968 29 H 0.265 0.735 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 -21.050 0.761 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.302 5.302 3 C -0.402 4.402 4 H 0.111 0.889 5 C -0.170 4.170 6 N -0.540 5.540 7 Si 0.722 3.278 8 H -0.215 1.215 9 H -0.231 1.231 10 H -0.201 1.201 11 C 0.046 3.954 12 H 0.133 0.867 13 C -0.196 4.196 14 C -0.024 4.024 15 N -0.287 5.287 16 C 0.102 3.898 17 C -0.173 4.173 18 C -0.088 4.088 19 C -0.097 4.097 20 Cl -0.031 7.031 21 C -0.025 4.025 22 Cl -0.018 7.018 23 C -0.167 4.167 24 C 0.292 3.708 25 O -0.368 6.368 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -5.890 -20.730 1.604 21.610 hybrid contribution -1.091 -0.114 -0.431 1.178 sum -6.981 -20.844 1.173 22.013 Atomic orbital electron populations 1.21605 0.84219 1.01185 0.98314 1.43952 1.00587 1.00784 1.84885 1.18938 0.99251 0.83011 1.39004 0.88915 1.25102 0.98047 0.94852 0.99040 1.69854 1.42600 0.97259 1.44302 0.87011 0.82998 0.76033 0.81785 1.21470 1.23145 1.20056 1.21013 0.99378 0.85966 0.89078 0.86678 1.23258 0.98032 0.98369 0.99911 1.22331 1.00560 1.01445 0.78078 1.46212 1.44043 1.28726 1.09712 1.17784 0.93774 0.89281 0.88927 1.20826 1.01140 0.94751 1.00630 1.20734 0.99007 0.99129 0.89914 1.20629 1.03165 0.94292 0.91604 1.98366 1.84486 1.57066 1.63161 1.20531 0.99395 0.96048 0.86552 1.98389 1.94383 1.97649 1.11364 1.21560 1.03084 1.01223 0.90823 1.22799 0.76644 0.79266 0.92105 1.90560 1.54360 1.68771 1.23105 0.96177 0.91380 0.94951 0.92452 0.88137 0.89727 0.89985 0.90174 0.84168 0.83825 0.80753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.87 6.89 59.85 0.41 2.28 16 2 N -0.58 -12.81 2.70 -173.49 -0.47 -13.28 16 3 C -0.27 -7.32 10.03 -15.06 -0.15 -7.47 16 4 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 5 C 0.03 0.81 5.22 -17.43 -0.09 0.72 16 6 N -0.90 -26.71 13.97 55.49 0.78 -25.93 16 7 Si 0.89 21.10 23.95 -169.99 -4.07 17.03 16 8 H -0.29 -6.60 6.38 56.52 0.36 -6.24 16 9 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 10 H -0.27 -6.13 6.62 56.52 0.37 -5.76 16 11 C 0.16 2.82 3.51 -67.94 -0.24 2.58 16 12 H 0.12 2.06 7.92 -51.93 -0.41 1.65 16 13 C -0.16 -1.99 6.48 -25.10 -0.16 -2.15 16 14 C 0.10 1.09 5.61 -3.12 -0.02 1.07 16 15 N -0.56 -8.04 2.87 -112.27 -0.32 -8.36 16 16 C 0.20 2.69 6.60 -83.68 -0.55 2.14 16 17 C -0.15 -1.56 9.42 -39.39 -0.37 -1.93 16 18 C -0.07 -0.67 9.82 -39.58 -0.39 -1.05 16 19 C -0.07 -0.79 6.32 -39.44 -0.25 -1.04 16 20 Cl -0.06 -0.64 27.95 -51.86 -1.45 -2.09 16 21 C 0.00 0.04 6.32 -39.49 -0.25 -0.21 16 22 Cl -0.05 -0.62 27.95 -51.86 -1.45 -2.07 16 23 C -0.15 -2.18 9.07 -39.36 -0.36 -2.54 16 24 C 0.50 9.03 6.63 -10.86 -0.07 8.96 16 25 O -0.50 -10.47 14.81 5.55 0.08 -10.39 16 26 H 0.02 0.40 5.60 -51.93 -0.29 0.11 16 27 H 0.07 1.56 5.47 -51.93 -0.28 1.27 16 28 H 0.03 0.59 6.07 -51.93 -0.32 0.28 16 29 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.10 1.37 8.08 -51.93 -0.42 0.95 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.64 7.23 -51.93 -0.38 0.27 16 33 H 0.08 0.88 7.16 -51.93 -0.37 0.51 16 34 H 0.14 1.05 6.74 -52.48 -0.35 0.70 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.18 3.06 5.25 -52.48 -0.28 2.78 16 LS Contribution 318.31 15.07 4.80 4.80 Total: -1.00 -30.85 318.31 -8.16 -39.01 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -3.57 Total: -0.09 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -2.49 Total: 1.36 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.02 Total: -47.57 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.07 Total: 17.03 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -2.90 Total: -4.15 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.85 -8.16 -39.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181071731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.154 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds