Wall clock time and date at job start Tue Mar 31 2020 15:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36938 * 120.00218 * 2 1 4 4 H 1.07999 * 120.00208 * 158.52201 * 3 2 1 5 5 C 1.38815 * 119.99525 * 338.52134 * 3 2 1 6 6 N 1.31625 * 119.99823 * 158.25661 * 5 3 2 7 7 Si 1.86801 * 120.00199 * 338.25917 * 5 3 2 8 8 H 1.48490 * 109.47389 * 86.11312 * 7 5 3 9 9 H 1.48503 * 109.46976 * 206.11645 * 7 5 3 10 10 H 1.48504 * 109.46759 * 326.10854 * 7 5 3 11 11 C 1.46506 * 119.99743 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.43183 * 178.91629 * 11 2 1 13 13 C 1.54625 * 110.48425 * 56.23365 * 11 2 1 14 14 C 1.54480 * 101.76199 * 266.11470 * 13 11 2 15 15 N 1.46761 * 105.47623 * 334.58622 * 14 13 11 16 16 C 1.39973 * 124.35300 * 197.03561 * 15 14 13 17 17 C 1.38885 * 120.04859 * 5.79203 * 16 15 14 18 18 C 1.38105 * 119.96835 * 180.02562 * 17 16 15 19 19 C 1.38379 * 120.06557 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 119.94564 * 179.97438 * 19 18 17 21 21 C 1.38468 * 120.10510 * 359.97438 * 19 18 17 22 22 Cl 1.73601 * 119.98421 * 180.02562 * 21 19 18 23 23 C 1.38243 * 120.03262 * 359.72159 * 21 19 18 24 24 C 1.34423 * 111.30095 * 17.01791 * 15 14 13 25 25 O 1.21286 * 124.94349 * 179.56161 * 24 15 14 26 26 H 1.08999 * 109.46916 * 93.90515 * 1 2 3 27 27 H 1.09005 * 109.47149 * 333.90307 * 1 2 3 28 28 H 1.08999 * 109.47274 * 213.90071 * 1 2 3 29 29 H 0.96998 * 119.99586 * 179.97438 * 6 5 3 30 30 H 1.08998 * 110.97091 * 24.23324 * 13 11 2 31 31 H 1.09002 * 110.96822 * 148.00389 * 13 11 2 32 32 H 1.08999 * 110.25047 * 215.58300 * 14 13 11 33 33 H 1.09001 * 110.31770 * 93.62715 * 14 13 11 34 34 H 1.08007 * 120.01681 * 359.97438 * 17 16 15 35 35 H 1.08001 * 119.96724 * 180.02562 * 18 17 16 36 36 H 1.08003 * 120.03312 * 180.27441 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1735 1.2184 0.3424 5 6 1.5280 2.3463 -0.4402 6 7 1.9844 3.5215 -0.0621 7 14 0.0434 2.2399 -1.5691 8 1 -1.1883 2.0869 -0.7540 9 1 -0.0510 3.4799 -2.3808 10 1 0.1897 1.0685 -2.4700 11 6 2.1975 -1.2688 0.0006 12 1 3.2722 -1.0878 -0.0188 13 6 1.7708 -2.1405 -1.2032 14 6 0.6628 -3.0179 -0.5796 15 7 0.9665 -3.0711 0.8553 16 6 0.4344 -4.0154 1.7408 17 6 -0.3471 -5.0576 1.2591 18 6 -0.8718 -5.9882 2.1343 19 6 -0.6201 -5.8829 3.4910 20 17 -1.2818 -7.0540 4.5885 21 6 0.1586 -4.8450 3.9744 22 17 0.4729 -4.7164 5.6769 23 6 0.6911 -3.9148 3.1014 24 6 1.8218 -2.0965 1.2098 25 8 2.2321 -1.9079 2.3355 26 1 -0.3633 -0.0700 -1.0253 27 1 -0.3634 0.9229 0.4521 28 1 -0.3634 -0.8529 0.5732 29 1 1.5501 4.3324 -0.3700 30 1 1.3729 -1.5243 -2.0094 31 1 2.6011 -2.7526 -1.5553 32 1 0.6891 -4.0198 -1.0080 33 1 -0.3151 -2.5646 -0.7416 34 1 -0.5451 -5.1398 0.2005 35 1 -1.4791 -6.7988 1.7596 36 1 1.3022 -3.1078 3.4780 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181071731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:56 Heat of formation + Delta-G solvation = 4.673371 kcal Electronic energy + Delta-G solvation = -23450.127266 eV Core-core repulsion = 19793.679752 eV Total energy + Delta-G solvation = -3656.447514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.33661 -40.11230 -38.14322 -37.79481 -37.56020 -36.73716 -34.13557 -32.74032 -32.01099 -29.89604 -29.04306 -27.78794 -25.08780 -24.37945 -23.82398 -21.92315 -20.76209 -19.16398 -18.87397 -18.11082 -17.88142 -17.17968 -16.72015 -16.46038 -15.99432 -15.47349 -15.38371 -15.11516 -14.96827 -14.77731 -14.46010 -14.27405 -14.03881 -13.93256 -13.56297 -13.18163 -13.01336 -12.94836 -12.88203 -12.25550 -12.24046 -12.19806 -12.11918 -11.96699 -11.89962 -11.52633 -11.15913 -10.95963 -10.64338 -10.05068 -9.13588 -9.04309 -8.18401 -5.54132 -0.22165 -0.00553 0.77392 1.11471 1.31623 1.36396 1.44304 1.55213 1.70977 2.42372 2.43070 2.99715 3.20654 3.35789 3.53307 3.69992 3.90131 3.91547 4.08291 4.12568 4.19880 4.32626 4.47869 4.59035 4.60465 4.71045 4.74641 4.82210 4.94626 4.99317 5.09868 5.15843 5.23135 5.70888 5.73337 5.90410 6.06407 6.76976 6.92422 7.51807 7.79967 9.00678 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.021788 B = 0.003358 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.801824 B = 8336.728574 C = 8813.916247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.595 5.595 3 C -0.265 4.265 4 H 0.049 0.951 5 C -0.035 4.035 6 N -0.957 5.957 7 Si 0.960 3.040 8 H -0.274 1.274 9 H -0.315 1.315 10 H -0.241 1.241 11 C 0.144 3.856 12 H 0.097 0.903 13 C -0.139 4.139 14 C 0.093 3.907 15 N -0.554 5.554 16 C 0.178 3.822 17 C -0.126 4.126 18 C -0.056 4.056 19 C -0.069 4.069 20 Cl -0.051 7.051 21 C -0.012 4.012 22 Cl -0.057 7.057 23 C -0.170 4.170 24 C 0.498 3.502 25 O -0.546 6.546 26 H 0.046 0.954 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.263 0.737 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.133 0.867 33 H 0.092 0.908 34 H 0.184 0.816 35 H 0.184 0.816 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.131 -25.140 -2.163 26.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.319 5.319 3 C -0.394 4.394 4 H 0.067 0.933 5 C -0.230 4.230 6 N -0.602 5.602 7 Si 0.788 3.212 8 H -0.201 1.201 9 H -0.244 1.244 10 H -0.165 1.165 11 C 0.033 3.967 12 H 0.115 0.885 13 C -0.178 4.178 14 C -0.026 4.026 15 N -0.277 5.277 16 C 0.083 3.917 17 C -0.147 4.147 18 C -0.075 4.075 19 C -0.098 4.098 20 Cl -0.022 7.022 21 C -0.040 4.040 22 Cl -0.028 7.028 23 C -0.192 4.192 24 C 0.286 3.714 25 O -0.422 6.422 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.151 0.849 33 H 0.110 0.890 34 H 0.201 0.799 35 H 0.201 0.799 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.938 -24.928 -1.344 26.516 hybrid contribution -0.089 1.015 0.631 1.198 sum -9.027 -23.913 -0.714 25.570 Atomic orbital electron populations 1.21617 0.83027 1.00655 0.99704 1.43910 1.01410 1.00803 1.85744 1.18810 0.97839 0.85296 1.37443 0.93316 1.25876 1.02158 0.94162 1.00800 1.70021 1.45487 0.98200 1.46461 0.85891 0.79218 0.76558 0.79576 1.20073 1.24438 1.16501 1.21253 0.98345 0.85255 0.91814 0.88531 1.23147 0.99814 0.97741 0.97112 1.22696 1.00093 1.04062 0.75784 1.46103 1.42751 1.27687 1.11181 1.17963 0.95255 0.90435 0.88092 1.21236 0.98346 0.92417 1.02699 1.21224 0.98099 0.99560 0.88611 1.20865 1.02382 0.93675 0.92845 1.98375 1.84165 1.56417 1.63225 1.20591 1.00508 0.96875 0.86021 1.98379 1.94561 1.97749 1.12140 1.21339 1.04104 1.01268 0.92458 1.22681 0.77338 0.80221 0.91170 1.90553 1.56425 1.70403 1.24846 0.93662 0.94300 0.92815 0.92779 0.88039 0.86554 0.84865 0.88993 0.79897 0.79910 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.66 6.89 127.77 0.88 4.54 16 2 N -0.60 -26.33 2.70 -702.80 -1.90 -28.23 16 3 C -0.27 -14.75 10.03 84.03 0.84 -13.91 16 4 H 0.05 3.04 8.03 -2.91 -0.02 3.02 16 5 C -0.04 -2.00 5.22 84.86 0.44 -1.55 16 6 N -0.96 -59.81 13.97 21.65 0.30 -59.50 16 7 Si 0.96 43.36 23.95 68.60 1.64 45.00 16 8 H -0.27 -11.74 6.38 99.48 0.64 -11.11 16 9 H -0.32 -14.77 7.11 99.48 0.71 -14.07 16 10 H -0.24 -9.50 6.62 99.48 0.66 -8.84 16 11 C 0.14 5.09 3.51 44.98 0.16 5.25 16 12 H 0.10 3.64 7.92 -2.39 -0.02 3.63 16 13 C -0.14 -2.99 6.48 31.65 0.21 -2.79 16 14 C 0.09 1.56 5.61 86.83 0.49 2.05 16 15 N -0.55 -14.28 2.87 -627.68 -1.80 -16.08 16 16 C 0.18 4.32 6.60 38.13 0.25 4.58 16 17 C -0.13 -1.87 9.42 22.39 0.21 -1.66 16 18 C -0.06 -0.79 9.82 22.27 0.22 -0.58 16 19 C -0.07 -1.41 6.32 22.36 0.14 -1.27 16 20 Cl -0.05 -0.95 27.95 -2.72 -0.08 -1.03 16 21 C -0.01 -0.31 6.32 22.33 0.14 -0.17 16 22 Cl -0.06 -1.53 27.95 -2.72 -0.08 -1.61 16 23 C -0.17 -5.10 9.07 22.41 0.20 -4.90 16 24 C 0.50 17.91 6.63 87.90 0.58 18.49 16 25 O -0.55 -24.55 14.81 -3.05 -0.05 -24.60 16 26 H 0.05 1.56 5.60 -2.39 -0.01 1.54 16 27 H 0.04 1.73 5.47 -2.38 -0.01 1.72 16 28 H 0.05 1.84 6.07 -2.39 -0.01 1.82 16 29 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.10 2.27 8.08 -2.39 -0.02 2.25 16 31 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.13 0.97 7.23 -2.39 -0.02 0.96 16 33 H 0.09 1.41 7.16 -2.39 -0.02 1.39 16 34 H 0.18 1.17 6.74 -2.91 -0.02 1.15 16 35 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 36 H 0.14 5.24 5.25 -2.91 -0.02 5.22 16 Total: -1.00 -75.29 318.31 3.83 -71.46 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.02 Total: 6.51 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 4.77 Total: 8.08 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -3.40 Total: -103.81 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.05 Total: -24.60 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.64 Total: 45.00 kcal Atomic # 17 Polarization: -2.49 SS G_CDS: -0.15 Total: -2.64 kcal Total: -75.29 3.83 -71.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181071731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.134 kcal (2) G-P(sol) polarization free energy of solvation -75.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds