Wall clock time and date at job start Tue Mar 31 2020 15:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36933 * 119.99580 * 2 1 4 4 H 1.08005 * 119.99906 * 153.32399 * 3 2 1 5 5 C 1.38811 * 120.00446 * 333.33088 * 3 2 1 6 6 N 1.31625 * 119.99885 * 349.83285 * 5 3 2 7 7 Si 1.86797 * 120.00174 * 169.84068 * 5 3 2 8 8 H 1.48498 * 109.47279 * 179.97438 * 7 5 3 9 9 H 1.48504 * 109.47107 * 299.99800 * 7 5 3 10 10 H 1.48499 * 109.47561 * 59.99616 * 7 5 3 11 11 C 1.46492 * 120.00074 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.43376 * 179.29373 * 11 2 1 13 13 C 1.54624 * 110.48824 * 301.84235 * 11 2 1 14 14 C 1.54478 * 101.76845 * 93.88209 * 13 11 2 15 15 N 1.46755 * 105.47548 * 25.41412 * 14 13 11 16 16 C 1.39970 * 124.35132 * 162.98419 * 15 14 13 17 17 C 1.38895 * 120.05151 * 180.02562 * 16 15 14 18 18 C 1.38097 * 119.96459 * 179.97438 * 17 16 15 19 19 C 1.38372 * 120.07251 * 0.02805 * 18 17 16 20 20 Cl 1.73600 * 119.94824 * 179.97438 * 19 18 17 21 21 C 1.38479 * 120.10555 * 359.97438 * 19 18 17 22 22 Cl 1.73594 * 119.98688 * 179.97438 * 21 19 18 23 23 C 1.38240 * 120.02843 * 359.70687 * 21 19 18 24 24 C 1.34748 * 111.34947 * 343.02335 * 15 14 13 25 25 O 1.21288 * 125.12186 * 180.38687 * 24 15 14 26 26 H 1.08997 * 109.47304 * 95.28336 * 1 2 3 27 27 H 1.09002 * 109.46847 * 215.28431 * 1 2 3 28 28 H 1.09005 * 109.47389 * 335.28131 * 1 2 3 29 29 H 0.96995 * 119.99921 * 180.02562 * 6 5 3 30 30 H 1.09007 * 110.96731 * 211.99992 * 13 11 2 31 31 H 1.09002 * 110.96730 * 335.71933 * 13 11 2 32 32 H 1.08996 * 110.25082 * 144.42008 * 14 13 11 33 33 H 1.09007 * 110.24149 * 266.33076 * 14 13 11 34 34 H 1.07998 * 120.01597 * 359.97438 * 17 16 15 35 35 H 1.08003 * 119.95900 * 180.02562 * 18 17 16 36 36 H 1.07999 * 120.03895 * 180.27283 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1434 1.2358 0.4199 5 6 1.5663 2.3241 -0.5395 6 7 0.4480 2.2278 -1.2270 7 14 2.3685 3.9925 -0.2902 8 1 1.5550 5.0382 -0.9609 9 1 2.4550 4.2881 1.1625 10 1 3.7337 3.9778 -0.8744 11 6 2.1975 -1.2686 -0.0006 12 1 3.2722 -1.0875 -0.0131 13 6 1.8063 -2.1200 1.2295 14 6 0.6809 -3.0076 0.6533 15 7 0.9426 -3.0849 -0.7886 16 6 0.3848 -4.0437 -1.6423 17 6 0.6951 -4.0343 -2.9961 18 6 0.1442 -4.9814 -3.8366 19 6 -0.7172 -5.9394 -3.3317 20 17 -1.4085 -7.1281 -4.3913 21 6 -1.0287 -5.9515 -1.9824 22 17 -2.1102 -7.1544 -1.3524 23 6 -0.4744 -5.0094 -1.1360 24 6 1.7895 -2.1151 -1.1862 25 8 2.1691 -1.9440 -2.3254 26 1 -0.3634 -0.0946 -1.0233 27 1 -0.3633 -0.8389 0.5936 28 1 -0.3634 0.9335 0.4297 29 1 0.0406 3.0230 -1.6043 30 1 2.6468 -2.7262 1.5675 31 1 1.4326 -1.4902 2.0369 32 1 0.7200 -4.0021 1.0976 33 1 -0.2915 -2.5507 0.8376 34 1 1.3669 -3.2867 -3.3912 35 1 0.3859 -4.9743 -4.8892 36 1 -0.7138 -5.0214 -0.0830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181071753.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:59 Heat of formation + Delta-G solvation = 0.687635 kcal Electronic energy + Delta-G solvation = -23373.972995 eV Core-core repulsion = 19717.352646 eV Total energy + Delta-G solvation = -3656.620349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.20904 -40.07947 -37.98585 -37.71742 -37.56652 -36.63781 -34.04584 -32.12324 -32.07752 -29.72746 -28.77517 -27.75559 -24.86200 -24.48397 -23.61127 -21.97680 -20.66955 -19.07332 -18.89437 -17.99965 -17.85884 -16.94636 -16.56407 -16.33009 -15.70654 -15.44383 -15.22891 -15.07444 -14.96702 -14.87318 -14.44364 -13.91151 -13.86650 -13.45445 -13.05076 -12.97583 -12.92375 -12.89862 -12.80127 -12.56105 -12.34520 -12.12861 -12.05526 -11.95959 -11.94057 -11.81518 -10.93817 -10.90447 -10.59637 -10.06209 -9.01289 -8.83919 -7.92747 -5.45118 -0.19763 -0.04480 0.75152 1.08466 1.40130 1.48985 1.51799 1.57312 1.78498 2.41333 2.50128 3.21373 3.42600 3.52148 3.61856 3.69615 3.91151 3.95935 4.06062 4.22073 4.29043 4.45051 4.52425 4.58813 4.74438 4.79441 4.94052 4.98464 5.12257 5.21897 5.22671 5.28992 5.53353 5.63449 5.74770 5.95192 6.26574 6.99006 7.07250 7.70941 8.15346 9.11367 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.023657 B = 0.003096 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.317337 B = 9040.971911 C = 9479.553775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.582 5.582 3 C -0.274 4.274 4 H 0.082 0.918 5 C -0.046 4.046 6 N -0.936 5.936 7 Si 0.975 3.025 8 H -0.298 1.298 9 H -0.267 1.267 10 H -0.278 1.278 11 C 0.137 3.863 12 H 0.098 0.902 13 C -0.131 4.131 14 C 0.092 3.908 15 N -0.558 5.558 16 C 0.184 3.816 17 C -0.168 4.168 18 C -0.063 4.063 19 C -0.070 4.070 20 Cl -0.049 7.049 21 C -0.002 4.002 22 Cl -0.036 7.036 23 C -0.136 4.136 24 C 0.494 3.506 25 O -0.550 6.550 26 H -0.026 1.026 27 H 0.047 0.953 28 H 0.037 0.963 29 H 0.250 0.750 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 -19.197 4.217 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.305 5.305 3 C -0.404 4.404 4 H 0.100 0.900 5 C -0.242 4.242 6 N -0.581 5.581 7 Si 0.803 3.197 8 H -0.224 1.224 9 H -0.192 1.192 10 H -0.203 1.203 11 C 0.026 3.974 12 H 0.116 0.884 13 C -0.170 4.170 14 C -0.029 4.029 15 N -0.280 5.280 16 C 0.087 3.913 17 C -0.189 4.189 18 C -0.082 4.082 19 C -0.098 4.098 20 Cl -0.020 7.020 21 C -0.030 4.030 22 Cl -0.007 7.007 23 C -0.158 4.158 24 C 0.283 3.717 25 O -0.426 6.426 26 H -0.007 1.007 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.133 0.867 31 H 0.123 0.877 32 H 0.141 0.859 33 H 0.104 0.896 34 H 0.159 0.841 35 H 0.177 0.823 36 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.010 -19.130 3.549 19.688 hybrid contribution 0.000 1.114 -0.825 1.386 sum -3.010 -18.017 2.725 18.468 Atomic orbital electron populations 1.20673 0.82167 0.98484 0.95732 1.44084 1.02062 1.00038 1.84271 1.19649 1.01608 0.86414 1.32754 0.90031 1.26022 0.98483 1.02794 0.96945 1.70234 1.21520 1.28808 1.37506 0.85228 0.77553 0.78718 0.78234 1.22407 1.19214 1.20344 1.21518 0.98391 0.85964 0.91555 0.88449 1.23086 0.99150 0.97642 0.97144 1.22688 1.00472 1.03462 0.76229 1.46231 1.43546 1.27339 1.10890 1.17966 0.93952 0.89475 0.89890 1.21691 1.03374 1.01336 0.92514 1.21009 0.94169 0.91750 1.01270 1.20717 1.02429 0.96520 0.90169 1.98366 1.83352 1.55444 1.64802 1.20465 0.96806 0.94206 0.91563 1.98386 1.61848 1.53881 1.86597 1.20690 0.99177 0.94286 1.01639 1.23226 0.77321 0.79574 0.91619 1.90495 1.57900 1.70509 1.23725 1.00732 0.93455 0.94383 0.94096 0.86729 0.87651 0.85893 0.89636 0.84113 0.82342 0.81130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.09 8.20 127.77 1.05 9.14 16 2 N -0.58 -27.38 2.85 -702.84 -2.01 -29.39 16 3 C -0.27 -14.41 9.56 84.03 0.80 -13.61 16 4 H 0.08 4.04 7.85 -2.91 -0.02 4.02 16 5 C -0.05 -2.54 5.08 84.86 0.43 -2.11 16 6 N -0.94 -55.28 10.84 21.65 0.23 -55.05 16 7 Si 0.98 43.90 29.57 68.60 2.03 45.92 16 8 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 11 C 0.14 5.13 3.50 44.98 0.16 5.28 16 12 H 0.10 3.68 7.94 -2.39 -0.02 3.66 16 13 C -0.13 -3.11 6.34 31.65 0.20 -2.90 16 14 C 0.09 1.98 5.67 86.83 0.49 2.48 16 15 N -0.56 -17.09 3.15 -627.22 -1.97 -19.07 16 16 C 0.18 5.36 6.61 38.14 0.25 5.61 16 17 C -0.17 -5.33 9.31 22.39 0.21 -5.12 16 18 C -0.06 -1.62 9.82 22.27 0.22 -1.40 16 19 C -0.07 -1.67 6.32 22.36 0.14 -1.53 16 20 Cl -0.05 -1.03 27.95 -2.72 -0.08 -1.11 16 21 C 0.00 -0.05 6.32 22.33 0.14 0.09 16 22 Cl -0.04 -0.71 27.95 -2.72 -0.08 -0.79 16 23 C -0.14 -3.10 9.19 22.41 0.21 -2.89 16 24 C 0.49 19.71 7.00 87.85 0.62 20.32 16 25 O -0.55 -26.60 14.81 -3.05 -0.05 -26.64 16 26 H -0.03 -1.41 7.84 -2.39 -0.02 -1.43 16 27 H 0.05 1.73 4.94 -2.39 -0.01 1.72 16 28 H 0.04 1.94 6.82 -2.38 -0.02 1.92 16 29 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.11 2.47 8.08 -2.39 -0.02 2.45 16 32 H 0.12 1.63 7.44 -2.39 -0.02 1.61 16 33 H 0.09 1.84 6.23 -2.38 -0.01 1.83 16 34 H 0.14 5.39 5.20 -2.91 -0.02 5.37 16 35 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.17 2.85 6.85 -2.91 -0.02 2.83 16 Total: -1.00 -68.93 325.05 4.13 -64.80 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.13 Total: 7.95 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 4.92 Total: 13.37 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -3.74 Total: -103.50 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.15 Total: -1.90 kcal Total: -68.93 4.13 -64.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181071753.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.489 kcal (2) G-P(sol) polarization free energy of solvation -68.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds