Wall clock time and date at job start Tue Mar 31 2020 14:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31319 * 1 3 3 Si 1.86807 * 119.99822 * 2 1 4 4 H 1.48493 * 109.47335 * 269.99352 * 3 2 1 5 5 H 1.48498 * 109.46933 * 29.99805 * 3 2 1 6 6 H 1.48505 * 109.46771 * 149.99732 * 3 2 1 7 7 C 1.39108 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00201 * 186.02798 * 7 2 1 9 9 N 1.36781 * 119.99394 * 6.03357 * 7 2 1 10 10 C 1.34777 * 120.00433 * 45.91015 * 9 7 2 11 11 O 1.21566 * 120.00000 * 4.23117 * 10 9 7 12 12 C 1.48004 * 120.00208 * 184.22550 * 10 9 7 13 13 C 1.39328 * 119.71796 * 173.72375 * 12 10 9 14 14 C 1.38735 * 119.06421 * 179.73724 * 13 12 10 15 15 Cl 1.73595 * 120.75502 * 180.26316 * 14 13 12 16 16 C 1.38736 * 118.48637 * 0.52507 * 14 13 12 17 17 C 1.38660 * 119.34539 * 359.73723 * 16 14 13 18 18 Cl 1.73603 * 119.55257 * 179.97438 * 17 16 14 19 19 N 1.31647 * 120.89236 * 359.97438 * 17 16 14 20 20 C 1.46504 * 119.99669 * 225.90413 * 9 7 2 21 21 C 1.55243 * 110.57675 * 102.33435 * 20 9 7 22 22 C 1.54888 * 102.58618 * 203.33831 * 21 20 9 23 23 C 1.54262 * 104.31520 * 37.93260 * 22 21 20 24 24 C 1.53885 * 106.59767 * 336.32347 * 23 22 21 25 25 H 0.97000 * 119.99825 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.46374 * 359.97438 * 13 12 10 27 27 H 1.08008 * 120.32630 * 179.70694 * 16 14 13 28 28 H 1.09000 * 110.43568 * 224.91274 * 20 9 7 29 29 H 1.09004 * 110.89986 * 85.04730 * 21 20 9 30 30 H 1.08999 * 110.76905 * 321.56907 * 21 20 9 31 31 H 1.09004 * 110.48795 * 279.18869 * 22 21 20 32 32 H 1.09000 * 110.48510 * 156.68090 * 22 21 20 33 33 H 1.08995 * 110.03595 * 95.60578 * 23 22 21 34 34 H 1.09000 * 110.03602 * 216.99290 * 23 22 21 35 35 H 1.08991 * 110.03115 * 119.28377 * 24 23 22 36 36 H 1.08997 * 110.03101 * 240.66956 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 2.4948 2.0465 -1.4000 5 1 1.4445 2.6527 0.7000 6 1 3.5447 1.4402 0.7001 7 6 2.0088 -1.2047 0.0005 8 1 3.0843 -1.2072 0.0988 9 7 1.3305 -2.3860 -0.1235 10 6 0.3713 -2.5172 -1.0611 11 8 0.1615 -1.6134 -1.8466 12 6 -0.4266 -3.7616 -1.1345 13 6 -1.5016 -3.8417 -2.0171 14 6 -2.2369 -5.0166 -2.0788 15 17 -3.5807 -5.1667 -3.1675 16 6 -1.8772 -6.0667 -1.2466 17 6 -0.7988 -5.9150 -0.3883 18 17 -0.3444 -7.2253 0.6558 19 7 -0.1148 -4.7906 -0.3546 20 6 1.6469 -3.5087 0.7629 21 6 0.5777 -3.6393 1.8809 22 6 1.3447 -4.3941 2.9949 23 6 2.7692 -3.8044 2.9439 24 6 2.9614 -3.2415 1.5247 25 1 -0.4850 0.8401 -0.0004 26 1 -1.7565 -3.0023 -2.6472 27 1 -2.4321 -6.9931 -1.2667 28 1 1.7177 -4.4352 0.1931 29 1 -0.2760 -4.2229 1.5362 30 1 0.2599 -2.6564 2.2285 31 1 1.3668 -5.4636 2.7856 32 1 0.8884 -4.2059 3.9668 33 1 2.8694 -3.0059 3.6790 34 1 3.5039 -4.5856 3.1391 35 1 3.1547 -2.1698 1.5712 36 1 3.7898 -3.7491 1.0307 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181988878.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:01 Heat of formation + Delta-G solvation = 18.067716 kcal Electronic energy + Delta-G solvation = -24277.016161 eV Core-core repulsion = 20621.149469 eV Total energy + Delta-G solvation = -3655.866692 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.37353 -38.37321 -36.86367 -36.68816 -36.32477 -33.54275 -32.45268 -31.47207 -30.73587 -28.04456 -26.71037 -25.60378 -23.62791 -23.25500 -20.57938 -19.60719 -19.50938 -17.63746 -16.93900 -16.08799 -15.91970 -15.35348 -15.17891 -14.80335 -14.37488 -14.19381 -13.72007 -13.57114 -13.07819 -12.76981 -12.64120 -12.44508 -12.17704 -11.65528 -11.41627 -11.35386 -11.07344 -11.01761 -10.97408 -10.89139 -10.56648 -10.42440 -10.34277 -10.17327 -9.98550 -9.73331 -9.22304 -9.08094 -8.88477 -8.78629 -8.23772 -7.14558 -6.21432 -3.98743 0.83088 1.06193 1.62174 2.10688 3.23409 3.29962 3.31931 3.40903 4.12478 4.44283 4.67676 4.86469 4.88513 5.00558 5.19683 5.28158 5.38715 5.46769 5.54929 5.70729 5.83230 6.06228 6.15301 6.26785 6.31274 6.34133 6.42865 6.55811 6.60931 6.61595 6.82662 7.02768 7.12848 7.33204 7.47677 7.76830 8.15447 8.91885 9.04627 9.49678 10.18144 10.82966 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011844 B = 0.005836 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.411135 B = 4796.925265 C = 6839.059362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.056 3.944 3 Si 0.917 3.083 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.321 4.321 8 H 0.089 0.911 9 N -0.415 5.415 10 C 0.505 3.495 11 O -0.524 6.524 12 C 0.149 3.851 13 C -0.117 4.117 14 C 0.012 3.988 15 Cl -0.050 7.050 16 C -0.161 4.161 17 C 0.177 3.823 18 Cl -0.030 7.030 19 N -0.442 5.442 20 C 0.138 3.862 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.137 4.137 25 H 0.267 0.733 26 H 0.160 0.840 27 H 0.149 0.851 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.514 -12.241 1.289 12.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.155 4.155 3 Si 0.743 3.257 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.449 4.449 8 H 0.107 0.893 9 N -0.134 5.134 10 C 0.292 3.708 11 O -0.402 6.402 12 C 0.011 3.989 13 C -0.140 4.140 14 C -0.023 4.023 15 Cl -0.021 7.021 16 C -0.184 4.184 17 C 0.011 3.989 18 Cl -0.002 7.002 19 N -0.157 5.157 20 C 0.034 3.966 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.175 4.175 25 H 0.077 0.923 26 H 0.177 0.823 27 H 0.166 0.834 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.129 -11.654 1.446 11.935 hybrid contribution -0.618 0.444 -0.375 0.849 sum -2.747 -11.210 1.070 11.591 Atomic orbital electron populations 1.69827 1.06442 1.27582 1.41057 1.25433 0.95124 0.99632 0.95334 0.86115 0.79309 0.81787 0.78452 1.20244 1.21039 1.19526 1.19130 0.91488 0.82260 1.52044 0.89307 1.43206 1.32723 1.11177 1.26296 1.17190 0.85117 0.84486 0.84022 1.90638 1.68552 1.39371 1.41633 1.22216 0.93184 0.93703 0.89834 1.22125 0.94358 0.97371 1.00096 1.20995 0.91839 0.95054 0.94384 1.98381 1.43762 1.97908 1.62079 1.21609 0.98963 1.00284 0.97502 1.21594 0.93062 0.90701 0.93512 1.98393 1.92553 1.43756 1.65478 1.67907 1.27993 0.98833 1.20970 1.22247 0.92940 0.90620 0.90812 1.22889 0.98448 0.99784 0.94766 1.22251 0.95695 0.99333 0.98413 1.22045 0.96574 0.99220 0.97639 1.22543 0.97073 1.03658 0.94211 0.92261 0.82266 0.83367 0.89127 0.91606 0.91710 0.92268 0.92939 0.92510 0.93042 0.88697 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.02 11.15 55.50 0.62 -22.40 16 2 C 0.06 1.50 4.77 -17.45 -0.08 1.41 16 3 Si 0.92 20.67 29.56 -169.99 -5.02 15.64 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 7 C -0.32 -8.33 7.65 -15.02 -0.11 -8.45 16 8 H 0.09 2.19 6.51 -52.49 -0.34 1.85 16 9 N -0.42 -10.18 2.61 -106.78 -0.28 -10.46 16 10 C 0.51 12.75 6.70 -12.26 -0.08 12.67 16 11 O -0.52 -14.98 14.03 5.31 0.07 -14.91 16 12 C 0.15 3.10 6.53 -83.03 -0.54 2.55 16 13 C -0.12 -2.14 9.45 -38.99 -0.37 -2.51 16 14 C 0.01 0.18 6.37 -39.21 -0.25 -0.07 16 15 Cl -0.05 -0.64 29.02 -51.86 -1.50 -2.14 16 16 C -0.16 -2.20 9.70 -39.24 -0.38 -2.59 16 17 C 0.18 2.72 7.08 -17.47 -0.12 2.60 16 18 Cl -0.03 -0.39 29.10 -51.86 -1.51 -1.90 16 19 N -0.44 -8.10 3.79 -6.96 -0.03 -8.12 16 20 C 0.14 2.82 2.58 -66.08 -0.17 2.65 16 21 C -0.12 -2.33 5.90 -24.55 -0.14 -2.47 16 22 C -0.12 -1.88 6.82 -25.08 -0.17 -2.05 16 23 C -0.12 -1.82 6.80 -25.61 -0.17 -2.00 16 24 C -0.14 -2.52 6.00 -25.61 -0.15 -2.67 16 25 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 26 H 0.16 2.99 7.65 -52.48 -0.40 2.59 16 27 H 0.15 1.59 8.06 -52.48 -0.42 1.16 16 28 H 0.09 1.82 6.05 -51.93 -0.31 1.51 16 29 H 0.07 1.28 5.65 -51.93 -0.29 0.98 16 30 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.93 5.44 -51.93 -0.28 1.64 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -28.82 323.45 -9.26 -38.08 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.73 Total: 2.27 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.76 Total: -0.93 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.31 Total: -40.99 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.07 Total: -14.91 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -3.01 Total: -4.04 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.82 -9.26 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181988878.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.150 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds