Wall clock time and date at job start Tue Mar 31 2020 14:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31319 * 1 3 3 Si 1.86807 * 119.99822 * 2 1 4 4 H 1.48493 * 109.47335 * 269.99352 * 3 2 1 5 5 H 1.48498 * 109.46933 * 29.99805 * 3 2 1 6 6 H 1.48505 * 109.46771 * 149.99732 * 3 2 1 7 7 C 1.39108 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00201 * 186.02798 * 7 2 1 9 9 N 1.36781 * 119.99394 * 6.03357 * 7 2 1 10 10 C 1.34777 * 120.00433 * 45.91015 * 9 7 2 11 11 O 1.21566 * 120.00000 * 4.23117 * 10 9 7 12 12 C 1.48004 * 120.00208 * 184.22550 * 10 9 7 13 13 C 1.39328 * 119.71796 * 173.72375 * 12 10 9 14 14 C 1.38735 * 119.06421 * 179.73724 * 13 12 10 15 15 Cl 1.73595 * 120.75502 * 180.26316 * 14 13 12 16 16 C 1.38736 * 118.48637 * 0.52507 * 14 13 12 17 17 C 1.38660 * 119.34539 * 359.73723 * 16 14 13 18 18 Cl 1.73603 * 119.55257 * 179.97438 * 17 16 14 19 19 N 1.31647 * 120.89236 * 359.97438 * 17 16 14 20 20 C 1.46504 * 119.99669 * 225.90413 * 9 7 2 21 21 C 1.55243 * 110.57675 * 102.33435 * 20 9 7 22 22 C 1.54888 * 102.58618 * 203.33831 * 21 20 9 23 23 C 1.54262 * 104.31520 * 37.93260 * 22 21 20 24 24 C 1.53885 * 106.59767 * 336.32347 * 23 22 21 25 25 H 0.97000 * 119.99825 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.46374 * 359.97438 * 13 12 10 27 27 H 1.08008 * 120.32630 * 179.70694 * 16 14 13 28 28 H 1.09000 * 110.43568 * 224.91274 * 20 9 7 29 29 H 1.09004 * 110.89986 * 85.04730 * 21 20 9 30 30 H 1.08999 * 110.76905 * 321.56907 * 21 20 9 31 31 H 1.09004 * 110.48795 * 279.18869 * 22 21 20 32 32 H 1.09000 * 110.48510 * 156.68090 * 22 21 20 33 33 H 1.08995 * 110.03595 * 95.60578 * 23 22 21 34 34 H 1.09000 * 110.03602 * 216.99290 * 23 22 21 35 35 H 1.08991 * 110.03115 * 119.28377 * 24 23 22 36 36 H 1.08997 * 110.03101 * 240.66956 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 2.4948 2.0465 -1.4000 5 1 1.4445 2.6527 0.7000 6 1 3.5447 1.4402 0.7001 7 6 2.0088 -1.2047 0.0005 8 1 3.0843 -1.2072 0.0988 9 7 1.3305 -2.3860 -0.1235 10 6 0.3713 -2.5172 -1.0611 11 8 0.1615 -1.6134 -1.8466 12 6 -0.4266 -3.7616 -1.1345 13 6 -1.5016 -3.8417 -2.0171 14 6 -2.2369 -5.0166 -2.0788 15 17 -3.5807 -5.1667 -3.1675 16 6 -1.8772 -6.0667 -1.2466 17 6 -0.7988 -5.9150 -0.3883 18 17 -0.3444 -7.2253 0.6558 19 7 -0.1148 -4.7906 -0.3546 20 6 1.6469 -3.5087 0.7629 21 6 0.5777 -3.6393 1.8809 22 6 1.3447 -4.3941 2.9949 23 6 2.7692 -3.8044 2.9439 24 6 2.9614 -3.2415 1.5247 25 1 -0.4850 0.8401 -0.0004 26 1 -1.7565 -3.0023 -2.6472 27 1 -2.4321 -6.9931 -1.2667 28 1 1.7177 -4.4352 0.1931 29 1 -0.2760 -4.2229 1.5362 30 1 0.2599 -2.6564 2.2285 31 1 1.3668 -5.4636 2.7856 32 1 0.8884 -4.2059 3.9668 33 1 2.8694 -3.0059 3.6790 34 1 3.5039 -4.5856 3.1391 35 1 3.1547 -2.1698 1.5712 36 1 3.7898 -3.7491 1.0307 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181988878.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:01 Heat of formation + Delta-G solvation = 3.186136 kcal Electronic energy + Delta-G solvation = -24277.661475 eV Core-core repulsion = 20621.149469 eV Total energy + Delta-G solvation = -3656.512006 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.84552 -39.98903 -38.32870 -37.98055 -37.58479 -35.35841 -33.96265 -33.15361 -32.20145 -29.52100 -28.27605 -27.34293 -25.19242 -24.62385 -22.21131 -21.22139 -20.95728 -19.26027 -18.31530 -17.78208 -17.36940 -17.00479 -16.57097 -16.30561 -15.98255 -15.62083 -15.43644 -15.07998 -14.73839 -14.34406 -14.06551 -13.65744 -13.53424 -13.39025 -13.03592 -12.80068 -12.67980 -12.47710 -12.44536 -12.18531 -12.06056 -11.89316 -11.82833 -11.76067 -11.43995 -11.12211 -10.84994 -10.66517 -10.53806 -10.16294 -10.04112 -9.06553 -8.18463 -6.01652 -0.53645 -0.25644 0.41160 0.89078 1.40589 1.45940 1.52979 1.93339 2.32196 2.79218 2.92846 3.24779 3.42829 3.60227 3.65635 3.90527 3.97222 4.07245 4.21692 4.28875 4.47661 4.67512 4.76127 4.82161 4.87645 4.93285 5.00373 5.11447 5.24185 5.25461 5.34358 5.46595 5.60304 5.65810 5.75325 6.18561 6.38039 6.98770 7.16288 7.61258 8.28778 8.86775 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.011844 B = 0.005836 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.411135 B = 4796.925265 C = 6839.059362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.007 3.993 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.339 4.339 8 H 0.094 0.906 9 N -0.431 5.431 10 C 0.496 3.504 11 O -0.574 6.574 12 C 0.122 3.878 13 C -0.124 4.124 14 C 0.018 3.982 15 Cl -0.022 7.022 16 C -0.130 4.130 17 C 0.170 3.830 18 Cl 0.002 6.998 19 N -0.447 5.447 20 C 0.135 3.865 21 C -0.113 4.113 22 C -0.109 4.109 23 C -0.110 4.110 24 C -0.137 4.137 25 H 0.260 0.740 26 H 0.144 0.856 27 H 0.191 0.809 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 -15.547 2.244 15.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.200 4.200 3 Si 0.801 3.199 4 H -0.212 1.212 5 H -0.209 1.209 6 H -0.174 1.174 7 C -0.467 4.467 8 H 0.111 0.889 9 N -0.149 5.149 10 C 0.284 3.716 11 O -0.455 6.455 12 C -0.016 4.016 13 C -0.146 4.146 14 C -0.017 4.017 15 Cl 0.008 6.992 16 C -0.151 4.151 17 C 0.003 3.997 18 Cl 0.030 6.970 19 N -0.163 5.163 20 C 0.032 3.968 21 C -0.152 4.152 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.175 4.175 25 H 0.069 0.931 26 H 0.162 0.838 27 H 0.208 0.792 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.165 -14.993 2.433 15.343 hybrid contribution -0.726 1.171 -0.750 1.568 sum -2.891 -13.822 1.684 14.221 Atomic orbital electron populations 1.69971 1.07955 1.27557 1.44010 1.26268 0.95787 1.02889 0.95040 0.85193 0.78928 0.77908 0.77836 1.21242 1.20881 1.17380 1.19389 0.91904 0.83223 1.52170 0.88897 1.43449 1.32659 1.11824 1.26960 1.17854 0.85066 0.85423 0.83271 1.90573 1.69920 1.41638 1.43342 1.21461 0.94512 0.93140 0.92450 1.21998 0.94524 0.98453 0.99628 1.20983 0.91996 0.94035 0.94705 1.98398 1.41996 1.97723 1.61113 1.22065 0.97394 1.00909 0.94746 1.21934 0.93150 0.90446 0.94136 1.98408 1.92399 1.41656 1.64520 1.67731 1.28790 0.99257 1.20486 1.22435 0.94359 0.89387 0.90658 1.22750 0.98596 0.98059 0.95782 1.22222 0.95110 0.99777 0.97561 1.22022 0.97217 1.00060 0.95504 1.22521 0.96418 1.02457 0.96100 0.93062 0.83834 0.79159 0.88635 0.91762 0.95835 0.90314 0.91530 0.92370 0.90003 0.91192 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.65 11.15 21.69 0.24 -51.41 16 2 C 0.01 0.38 4.77 84.98 0.41 0.78 16 3 Si 0.98 44.31 29.56 68.60 2.03 46.34 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.25 -10.36 7.11 99.48 0.71 -9.66 16 7 C -0.34 -18.41 7.65 84.13 0.64 -17.77 16 8 H 0.09 4.79 6.51 -2.91 -0.02 4.77 16 9 N -0.43 -22.09 2.61 -610.03 -1.59 -23.68 16 10 C 0.50 26.42 6.70 86.83 0.58 27.00 16 11 O -0.57 -35.02 14.03 -3.92 -0.06 -35.08 16 12 C 0.12 5.19 6.53 41.85 0.27 5.46 16 13 C -0.12 -4.58 9.45 22.65 0.21 -4.37 16 14 C 0.02 0.49 6.37 22.51 0.14 0.64 16 15 Cl -0.02 -0.49 29.02 -2.72 -0.08 -0.57 16 16 C -0.13 -3.08 9.70 22.49 0.22 -2.86 16 17 C 0.17 4.76 7.08 84.82 0.60 5.36 16 18 Cl 0.00 0.03 29.10 -2.72 -0.08 -0.04 16 19 N -0.45 -16.07 3.79 -175.94 -0.67 -16.74 16 20 C 0.13 5.56 2.58 46.19 0.12 5.68 16 21 C -0.11 -4.39 5.90 32.01 0.19 -4.20 16 22 C -0.11 -3.18 6.82 31.67 0.22 -2.97 16 23 C -0.11 -3.18 6.80 31.32 0.21 -2.97 16 24 C -0.14 -4.97 6.00 31.32 0.19 -4.78 16 25 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.14 5.71 7.65 -2.91 -0.02 5.68 16 27 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 28 H 0.10 3.81 6.05 -2.39 -0.01 3.80 16 29 H 0.06 2.47 5.65 -2.38 -0.01 2.45 16 30 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 2.90 5.44 -2.39 -0.01 2.88 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -67.95 323.45 4.93 -63.02 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 1.13 Total: 13.16 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 4.00 Total: 5.00 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -2.02 Total: -91.83 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -0.06 Total: -35.08 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.16 Total: -0.62 kcal Total: -67.95 4.93 -63.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181988878.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.208 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds