Wall clock time and date at job start Tue Mar 31 2020 14:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48505 * 109.47087 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47042 * 120.00217 * 3 2 1 6 6 H 1.48503 * 109.47023 * 240.00446 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.39827 * 110.99958 * 172.60827 * 14 13 12 16 16 C 1.38960 * 120.08141 * 64.02592 * 15 14 13 17 17 Cl 1.73595 * 120.04078 * 359.97438 * 16 15 14 18 18 C 1.38229 * 119.91437 * 179.74571 * 16 15 14 19 19 C 1.38275 * 120.08358 * 0.53278 * 18 16 15 20 20 C 1.38282 * 120.16094 * 359.73824 * 19 18 16 21 21 C 1.38218 * 120.08420 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 120.04475 * 180.02562 * 21 20 19 23 23 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 24 24 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 25 25 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 27 27 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 28 28 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 29 29 H 1.09004 * 109.42089 * 173.94552 * 13 12 11 30 30 H 1.07997 * 119.95283 * 180.26967 * 18 16 15 31 31 H 1.08001 * 119.91851 * 179.76723 * 19 18 16 32 32 H 1.08004 * 119.95377 * 180.02562 * 20 19 18 33 33 H 1.08994 * 109.49159 * 303.15220 * 23 14 13 34 34 H 1.08996 * 109.49043 * 183.06336 * 23 14 13 35 35 H 1.08999 * 109.63197 * 350.89564 * 24 11 9 36 36 H 1.09008 * 109.62635 * 111.48013 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7464 -0.0006 5 1 3.0945 1.6963 1.2125 6 1 3.0944 1.6963 -1.2126 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7584 -6.9799 1.5203 16 6 3.5903 -6.8959 2.8972 17 17 2.7316 -5.5545 3.5876 18 6 4.1035 -7.8844 3.7159 19 6 4.7930 -8.9500 3.1673 20 6 4.9671 -9.0340 1.7980 21 6 4.4516 -8.0525 0.9726 22 17 4.6702 -8.1593 -0.7463 23 6 1.7771 -5.8907 0.8322 24 6 1.2249 -4.9226 -0.2195 25 1 -0.4850 0.8400 0.0004 26 1 3.7736 -3.9711 -1.0920 27 1 3.8007 -2.6840 0.1423 28 1 3.6077 -4.3397 1.9417 29 1 4.9637 -4.8053 0.8859 30 1 3.9695 -7.8220 4.7857 31 1 5.1962 -9.7189 3.8097 32 1 5.5059 -9.8681 1.3730 33 1 1.5327 -5.5231 1.8288 34 1 1.3333 -6.8758 0.6885 35 1 0.1612 -4.7606 -0.0453 36 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187545636.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:43 Heat of formation + Delta-G solvation = 4.496035 kcal Electronic energy + Delta-G solvation = -23631.387591 eV Core-core repulsion = 19974.932386 eV Total energy + Delta-G solvation = -3656.455204 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.35029 -38.30422 -36.86562 -36.36341 -36.25811 -33.53403 -32.47748 -30.85105 -30.67479 -29.79301 -26.74210 -25.45359 -23.13104 -23.04830 -22.24628 -20.77945 -18.92832 -17.75904 -16.80391 -16.29501 -15.91626 -15.48320 -14.93766 -14.68716 -14.50689 -14.47458 -14.13911 -13.97464 -13.72688 -13.32911 -12.59544 -12.47209 -12.35256 -12.01803 -11.79631 -11.51590 -11.36408 -11.21431 -11.03517 -10.99447 -10.90954 -10.84108 -10.49126 -10.45636 -10.23479 -10.00764 -8.92379 -8.86358 -8.84610 -8.28742 -7.57315 -7.16350 -6.18897 -4.63793 0.74335 0.81452 1.77583 2.22375 3.15657 3.17422 3.20750 3.22189 3.73854 4.09942 4.51892 4.55643 4.61590 4.70292 4.86538 5.01362 5.14039 5.41094 5.51497 5.64527 5.68879 5.73652 5.79228 5.89059 5.92101 5.95207 6.10597 6.21993 6.23666 6.47530 6.55867 6.73925 7.09911 7.27636 7.45737 7.62062 8.14063 8.37450 9.02805 9.45783 10.58622 10.77281 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.019218 B = 0.003817 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.650802 B = 7334.726871 C = 7828.222520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.561 3.439 10 O -0.578 6.578 11 N -0.642 5.642 12 C 0.133 3.867 13 C 0.033 3.967 14 N -0.493 5.493 15 C 0.117 3.883 16 C -0.063 4.063 17 Cl -0.036 7.036 18 C -0.103 4.103 19 C -0.105 4.105 20 C -0.106 4.106 21 C -0.007 4.007 22 Cl -0.041 7.041 23 C 0.031 3.969 24 C 0.130 3.870 25 H 0.269 0.731 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.839 -17.442 5.864 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.206 1.206 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.090 0.910 9 C 0.367 3.633 10 O -0.461 6.461 11 N -0.381 5.381 12 C 0.008 3.992 13 C -0.094 4.094 14 N -0.215 5.215 15 C 0.021 3.979 16 C -0.092 4.092 17 Cl -0.007 7.007 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.125 4.125 21 C -0.035 4.035 22 Cl -0.011 7.011 23 C -0.095 4.095 24 C 0.005 3.995 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.981 -17.283 5.306 21.153 hybrid contribution 0.396 0.965 0.756 1.288 sum 11.377 -16.318 6.062 20.796 Atomic orbital electron populations 1.70005 1.07052 1.27361 1.35267 1.25712 0.94592 1.00234 0.92589 0.86474 0.79883 0.81190 0.79471 1.20573 1.19283 1.19211 1.20928 0.93511 0.89278 1.54392 0.91031 1.18223 0.86879 0.82147 0.76046 1.90588 1.14394 1.86073 1.55054 1.48213 1.04627 1.05768 1.79475 1.21537 0.82770 0.98324 0.96579 1.22945 0.98028 0.87750 1.00651 1.59706 1.05903 1.05266 1.50624 1.18573 0.97023 0.94237 0.88097 1.21922 1.00984 0.92833 0.93447 1.98410 1.74614 1.43767 1.83889 1.21120 0.97668 0.93144 1.00294 1.21035 0.98876 0.98063 0.94403 1.21126 0.99932 0.98281 0.93195 1.20775 1.00699 0.95518 0.86507 1.98385 1.95504 1.97710 1.09548 1.22910 0.85016 1.00261 1.01351 1.21158 0.97870 0.84239 0.96204 0.92068 0.93058 0.88561 0.92408 0.90881 0.84547 0.84287 0.84249 0.92087 0.91039 0.89377 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.01 11.84 55.55 0.66 -22.35 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.05 29.56 -169.99 -5.02 15.02 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.54 -15.19 8.86 -35.63 -0.32 -15.51 16 8 H 0.07 1.81 5.74 -52.49 -0.30 1.51 16 9 C 0.56 15.97 7.63 -12.99 -0.10 15.87 16 10 O -0.58 -18.73 14.49 5.20 0.08 -18.65 16 11 N -0.64 -14.75 3.00 -173.84 -0.52 -15.27 16 12 C 0.13 2.53 6.50 -3.36 -0.02 2.51 16 13 C 0.03 0.54 5.23 -3.46 -0.02 0.52 16 14 N -0.49 -7.66 3.98 -170.45 -0.68 -8.34 16 15 C 0.12 1.58 4.67 -83.67 -0.39 1.19 16 16 C -0.06 -0.79 5.97 -39.32 -0.23 -1.02 16 17 Cl -0.04 -0.52 22.77 -51.86 -1.18 -1.70 16 18 C -0.10 -0.99 9.82 -39.57 -0.39 -1.38 16 19 C -0.11 -0.83 10.04 -39.55 -0.40 -1.23 16 20 C -0.11 -0.95 9.82 -39.57 -0.39 -1.34 16 21 C -0.01 -0.08 6.34 -39.32 -0.25 -0.33 16 22 Cl -0.04 -0.49 28.44 -51.86 -1.47 -1.97 16 23 C 0.03 0.53 5.16 -3.70 -0.02 0.51 16 24 C 0.13 2.62 6.61 -3.60 -0.02 2.60 16 25 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 26 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 27 H 0.10 1.89 5.46 -51.93 -0.28 1.60 16 28 H 0.06 1.00 5.29 -51.93 -0.27 0.72 16 29 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 30 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 32 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.06 1.09 4.91 -51.93 -0.25 0.84 16 34 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 35 H 0.09 1.96 7.04 -51.93 -0.37 1.60 16 36 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 LS Contribution 320.92 15.07 4.84 4.84 Total: -1.00 -33.55 320.92 -9.52 -43.07 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.57 Total: 0.59 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -2.64 Total: 4.76 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.54 Total: -45.96 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.08 Total: -18.65 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -2.66 Total: -3.66 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.55 -9.52 -43.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187545636.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.567 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds