Wall clock time and date at job start Tue Mar 31 2020 15:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 119.99521 * 2 1 4 4 H 1.08002 * 119.99623 * 157.62226 * 3 2 1 5 5 C 1.38813 * 120.00505 * 337.62157 * 3 2 1 6 6 N 1.31623 * 119.99876 * 348.50678 * 5 3 2 7 7 Si 1.86801 * 120.00273 * 168.51101 * 5 3 2 8 8 H 1.48499 * 109.47351 * 179.97438 * 7 5 3 9 9 H 1.48502 * 109.47080 * 299.99934 * 7 5 3 10 10 H 1.48508 * 109.47106 * 60.00037 * 7 5 3 11 11 C 1.46498 * 119.99928 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.43166 * 180.69842 * 11 2 1 13 13 C 1.54623 * 110.48753 * 58.15927 * 11 2 1 14 14 C 1.54830 * 101.60459 * 266.08128 * 13 11 2 15 15 N 1.46761 * 105.49123 * 334.56497 * 14 13 11 16 16 C 1.40032 * 124.34818 * 197.01584 * 15 14 13 17 17 C 1.38838 * 120.06015 * 269.72448 * 16 15 14 18 18 C 1.38122 * 119.95336 * 179.74686 * 17 16 15 19 19 C 1.38404 * 120.07612 * 0.53188 * 18 17 16 20 20 Cl 1.73593 * 119.93633 * 179.72096 * 19 18 17 21 21 C 1.38360 * 120.12473 * 359.74584 * 19 18 17 22 22 C 1.38230 * 120.04291 * 359.97407 * 21 19 18 23 23 Cl 1.73597 * 120.03940 * 180.02562 * 22 21 19 24 24 C 1.34415 * 111.30107 * 17.04257 * 15 14 13 25 25 O 1.21292 * 124.94227 * 179.55726 * 24 15 14 26 26 H 1.08997 * 109.47304 * 88.23724 * 1 2 3 27 27 H 1.09002 * 109.46847 * 208.23820 * 1 2 3 28 28 H 1.09005 * 109.47389 * 328.23519 * 1 2 3 29 29 H 0.96996 * 120.00009 * 179.97438 * 6 5 3 30 30 H 1.09005 * 110.97283 * 24.23651 * 13 11 2 31 31 H 1.08994 * 110.97140 * 147.99822 * 13 11 2 32 32 H 1.09008 * 110.21815 * 215.56985 * 14 13 11 33 33 H 1.08997 * 110.32857 * 93.62326 * 14 13 11 34 34 H 1.07994 * 120.02901 * 0.02562 * 17 16 15 35 35 H 1.07996 * 119.96217 * 180.27255 * 18 17 16 36 36 H 1.07995 * 119.97612 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1686 1.2212 0.3561 5 6 1.5339 2.3428 -0.4577 6 7 0.3860 2.2685 -1.0973 7 14 2.3346 4.0051 -0.1659 8 1 1.4836 5.0736 -0.7484 9 1 2.4855 4.2325 1.2939 10 1 3.6717 4.0308 -0.8117 11 6 2.1975 -1.2687 -0.0006 12 1 3.2722 -1.0876 0.0120 13 6 1.8063 -2.1189 -1.2314 14 6 0.6794 -3.0077 -0.6506 15 7 0.9444 -3.0845 0.7909 16 6 0.3878 -4.0431 1.6465 17 6 -0.8178 -3.7882 2.2861 18 6 -1.3674 -4.7374 3.1255 19 6 -0.7122 -5.9378 3.3384 20 17 -1.4027 -7.1253 4.3998 21 6 0.4923 -6.1929 2.7072 22 6 1.0440 -5.2489 1.8615 23 17 2.5550 -5.5693 1.0691 24 6 1.7895 -2.1161 1.1843 25 8 2.1692 -1.9461 2.3236 26 1 -0.3634 0.0316 -1.0271 27 1 -0.3633 -0.9054 0.4862 28 1 -0.3634 0.8738 0.5410 29 1 -0.0444 3.0769 -1.4168 30 1 1.4319 -1.4885 -2.0380 31 1 2.6467 -2.7248 -1.5700 32 1 0.7176 -4.0025 -1.0946 33 1 -0.2938 -2.5516 -0.8315 34 1 -1.3279 -2.8502 2.1239 35 1 -2.3074 -4.5410 3.6197 36 1 1.0013 -7.1305 2.8747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190508548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:02 Heat of formation + Delta-G solvation = 18.518891 kcal Electronic energy + Delta-G solvation = -23559.034032 eV Core-core repulsion = 19903.186905 eV Total energy + Delta-G solvation = -3655.847128 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69295 -39.03512 -36.95431 -36.45156 -36.12879 -35.05027 -32.45146 -31.20675 -30.46089 -28.47043 -26.98337 -25.84963 -23.37792 -23.14784 -22.51185 -20.73122 -19.26531 -17.70037 -17.18735 -16.79100 -16.46782 -15.71664 -15.05218 -14.73067 -14.46294 -14.20486 -14.00487 -13.65552 -13.40431 -13.33186 -12.76223 -12.58728 -12.47201 -12.26641 -12.12646 -11.93027 -11.32819 -11.25796 -11.24075 -11.07254 -11.01961 -10.77008 -10.66081 -10.32634 -10.13220 -9.93834 -9.56589 -9.19586 -8.80243 -8.70311 -8.55292 -6.91142 -5.83569 -3.29876 0.66542 0.84141 1.61011 2.07743 3.03230 3.10730 3.14778 3.37173 3.41728 3.45088 4.44153 4.46918 4.69716 4.92017 4.94835 4.95279 5.16008 5.24260 5.38003 5.44377 5.48222 5.49921 5.66104 5.77507 5.84088 5.99443 6.16774 6.21007 6.42919 6.54637 6.66162 6.97287 7.24299 7.34715 7.57021 7.74330 8.26035 8.64794 9.11181 9.70356 10.17348 11.22202 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.021598 B = 0.003396 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.126789 B = 8243.534538 C = 8820.759590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.572 5.572 3 C -0.261 4.261 4 H 0.072 0.928 5 C 0.007 3.993 6 N -0.907 5.907 7 Si 0.910 3.090 8 H -0.290 1.290 9 H -0.283 1.283 10 H -0.281 1.281 11 C 0.157 3.843 12 H 0.100 0.900 13 C -0.151 4.151 14 C 0.114 3.886 15 N -0.590 5.590 16 C 0.174 3.826 17 C -0.087 4.087 18 C -0.098 4.098 19 C -0.027 4.027 20 Cl -0.061 7.061 21 C -0.099 4.099 22 C -0.023 4.023 23 Cl -0.046 7.046 24 C 0.516 3.484 25 O -0.521 6.521 26 H 0.032 0.968 27 H -0.004 1.004 28 H 0.051 0.949 29 H 0.255 0.745 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 -18.523 3.169 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.294 5.294 3 C -0.390 4.390 4 H 0.090 0.910 5 C -0.191 4.191 6 N -0.551 5.551 7 Si 0.740 3.260 8 H -0.216 1.216 9 H -0.209 1.209 10 H -0.207 1.207 11 C 0.043 3.957 12 H 0.118 0.882 13 C -0.191 4.191 14 C -0.007 4.007 15 N -0.324 5.324 16 C 0.083 3.917 17 C -0.107 4.107 18 C -0.117 4.117 19 C -0.054 4.054 20 Cl -0.033 7.033 21 C -0.119 4.119 22 C -0.052 4.052 23 Cl -0.017 7.017 24 C 0.303 3.697 25 O -0.393 6.393 26 H 0.051 0.949 27 H 0.014 0.986 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.568 -18.375 3.763 19.092 hybrid contribution 0.272 0.671 0.171 0.744 sum -3.296 -17.704 3.933 18.433 Atomic orbital electron populations 1.20898 0.81989 0.96296 0.99096 1.43729 1.01904 0.99114 1.84644 1.19232 0.98209 0.84928 1.36589 0.91018 1.24993 0.97590 0.98584 0.97956 1.70050 1.17879 1.27512 1.39680 0.86246 0.78510 0.83161 0.78094 1.21558 1.20900 1.20736 1.20954 0.98429 0.86736 0.89554 0.88199 1.23262 0.97514 0.98199 1.00174 1.22213 1.00251 1.00374 0.77882 1.45931 1.47680 1.29753 1.09014 1.17361 0.92556 0.87828 0.94004 1.21429 0.94362 0.99734 0.95152 1.21057 1.00665 0.91526 0.98451 1.20737 0.95313 0.92150 0.97210 1.98379 1.84076 1.56691 1.64107 1.20773 0.94760 0.99896 0.96508 1.21200 0.90131 0.95176 0.98702 1.98386 1.29507 1.95186 1.78614 1.22718 0.76343 0.79062 0.91557 1.90645 1.56251 1.70256 1.22142 0.94947 0.98573 0.93019 0.93515 0.88213 0.90790 0.91270 0.90771 0.83580 0.83858 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.76 7.70 59.85 0.46 4.22 16 2 N -0.57 -13.84 2.87 -173.50 -0.50 -14.34 16 3 C -0.26 -7.00 9.62 -15.06 -0.14 -7.15 16 4 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 5 C 0.01 0.20 5.11 -17.43 -0.09 0.11 16 6 N -0.91 -25.18 10.61 55.49 0.59 -24.59 16 7 Si 0.91 21.50 29.57 -169.99 -5.03 16.47 16 8 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 C 0.16 3.16 3.50 -67.95 -0.24 2.92 16 12 H 0.10 2.04 7.92 -51.93 -0.41 1.63 16 13 C -0.15 -2.38 6.54 -24.91 -0.16 -2.54 16 14 C 0.11 1.61 6.38 -2.94 -0.02 1.59 16 15 N -0.59 -9.55 2.02 -112.02 -0.23 -9.78 16 16 C 0.17 2.55 5.38 -83.63 -0.45 2.10 16 17 C -0.09 -1.12 9.97 -39.40 -0.39 -1.51 16 18 C -0.10 -1.05 9.82 -39.56 -0.39 -1.43 16 19 C -0.03 -0.29 6.32 -39.48 -0.25 -0.54 16 20 Cl -0.06 -0.58 28.95 -51.86 -1.50 -2.08 16 21 C -0.10 -1.11 9.61 -39.54 -0.38 -1.49 16 22 C -0.02 -0.31 6.34 -39.32 -0.25 -0.56 16 23 Cl -0.05 -0.60 28.44 -51.86 -1.47 -2.08 16 24 C 0.52 10.37 6.67 -10.87 -0.07 10.29 16 25 O -0.52 -12.38 17.71 5.55 0.10 -12.29 16 26 H 0.03 0.78 7.56 -51.93 -0.39 0.39 16 27 H 0.00 -0.09 5.74 -51.93 -0.30 -0.38 16 28 H 0.05 1.35 7.02 -51.93 -0.36 0.98 16 29 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.10 1.70 8.08 -51.93 -0.42 1.28 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.07 1.04 7.13 -51.93 -0.37 0.67 16 34 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 334.49 15.07 5.04 5.04 Total: -1.00 -30.55 334.49 -9.29 -39.84 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -3.92 Total: -2.20 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -2.37 Total: 5.99 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.14 Total: -48.71 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.10 Total: -12.29 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -2.98 Total: -4.15 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.55 -9.29 -39.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190508548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.355 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds