Wall clock time and date at job start Tue Mar 31 2020 15:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 119.99521 * 2 1 4 4 H 1.08002 * 119.99623 * 157.62226 * 3 2 1 5 5 C 1.38813 * 120.00505 * 337.62157 * 3 2 1 6 6 N 1.31623 * 119.99876 * 348.50678 * 5 3 2 7 7 Si 1.86801 * 120.00273 * 168.51101 * 5 3 2 8 8 H 1.48499 * 109.47351 * 179.97438 * 7 5 3 9 9 H 1.48502 * 109.47080 * 299.99934 * 7 5 3 10 10 H 1.48508 * 109.47106 * 60.00037 * 7 5 3 11 11 C 1.46498 * 119.99928 * 180.02562 * 2 1 3 12 12 H 1.08996 * 110.43166 * 180.69842 * 11 2 1 13 13 C 1.54623 * 110.48753 * 58.15927 * 11 2 1 14 14 C 1.54830 * 101.60459 * 266.08128 * 13 11 2 15 15 N 1.46761 * 105.49123 * 334.56497 * 14 13 11 16 16 C 1.40032 * 124.34818 * 197.01584 * 15 14 13 17 17 C 1.38838 * 120.06015 * 269.72448 * 16 15 14 18 18 C 1.38122 * 119.95336 * 179.74686 * 17 16 15 19 19 C 1.38404 * 120.07612 * 0.53188 * 18 17 16 20 20 Cl 1.73593 * 119.93633 * 179.72096 * 19 18 17 21 21 C 1.38360 * 120.12473 * 359.74584 * 19 18 17 22 22 C 1.38230 * 120.04291 * 359.97407 * 21 19 18 23 23 Cl 1.73597 * 120.03940 * 180.02562 * 22 21 19 24 24 C 1.34415 * 111.30107 * 17.04257 * 15 14 13 25 25 O 1.21292 * 124.94227 * 179.55726 * 24 15 14 26 26 H 1.08997 * 109.47304 * 88.23724 * 1 2 3 27 27 H 1.09002 * 109.46847 * 208.23820 * 1 2 3 28 28 H 1.09005 * 109.47389 * 328.23519 * 1 2 3 29 29 H 0.96996 * 120.00009 * 179.97438 * 6 5 3 30 30 H 1.09005 * 110.97283 * 24.23651 * 13 11 2 31 31 H 1.08994 * 110.97140 * 147.99822 * 13 11 2 32 32 H 1.09008 * 110.21815 * 215.56985 * 14 13 11 33 33 H 1.08997 * 110.32857 * 93.62326 * 14 13 11 34 34 H 1.07994 * 120.02901 * 0.02562 * 17 16 15 35 35 H 1.07996 * 119.96217 * 180.27255 * 18 17 16 36 36 H 1.07995 * 119.97612 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1686 1.2212 0.3561 5 6 1.5339 2.3428 -0.4577 6 7 0.3860 2.2685 -1.0973 7 14 2.3346 4.0051 -0.1659 8 1 1.4836 5.0736 -0.7484 9 1 2.4855 4.2325 1.2939 10 1 3.6717 4.0308 -0.8117 11 6 2.1975 -1.2687 -0.0006 12 1 3.2722 -1.0876 0.0120 13 6 1.8063 -2.1189 -1.2314 14 6 0.6794 -3.0077 -0.6506 15 7 0.9444 -3.0845 0.7909 16 6 0.3878 -4.0431 1.6465 17 6 -0.8178 -3.7882 2.2861 18 6 -1.3674 -4.7374 3.1255 19 6 -0.7122 -5.9378 3.3384 20 17 -1.4027 -7.1253 4.3998 21 6 0.4923 -6.1929 2.7072 22 6 1.0440 -5.2489 1.8615 23 17 2.5550 -5.5693 1.0691 24 6 1.7895 -2.1161 1.1843 25 8 2.1692 -1.9461 2.3236 26 1 -0.3634 0.0316 -1.0271 27 1 -0.3633 -0.9054 0.4862 28 1 -0.3634 0.8738 0.5410 29 1 -0.0444 3.0769 -1.4168 30 1 1.4319 -1.4885 -2.0380 31 1 2.6467 -2.7248 -1.5700 32 1 0.7176 -4.0025 -1.0946 33 1 -0.2938 -2.5516 -0.8315 34 1 -1.3279 -2.8502 2.1239 35 1 -2.3074 -4.5410 3.6197 36 1 1.0013 -7.1305 2.8747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190508548.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:02 Heat of formation + Delta-G solvation = 2.670571 kcal Electronic energy + Delta-G solvation = -23559.721267 eV Core-core repulsion = 19903.186905 eV Total energy + Delta-G solvation = -3656.534362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.01668 -40.15429 -37.86918 -37.78909 -37.41970 -36.63603 -34.00132 -32.23188 -32.01863 -29.70571 -28.59332 -27.73985 -24.67109 -24.18066 -23.98144 -22.14056 -20.66349 -19.07808 -18.81908 -17.92479 -17.84901 -17.14329 -16.38927 -16.08171 -15.99294 -15.33206 -15.09433 -15.07074 -14.93233 -14.75500 -14.27807 -14.00418 -13.80793 -13.40768 -13.36338 -13.10046 -12.94849 -12.92535 -12.59019 -12.29923 -12.18340 -12.12113 -12.08528 -12.01368 -11.94594 -11.78288 -11.20070 -10.59842 -10.13360 -10.01916 -9.76540 -8.84473 -7.88121 -5.35991 -0.30973 -0.08373 0.70575 1.13383 1.42489 1.49261 1.50366 1.57736 1.85808 2.20024 2.51098 3.26488 3.50931 3.57211 3.64429 3.82693 3.85406 3.96951 4.00983 4.14919 4.26987 4.47479 4.54654 4.65684 4.72291 4.74656 4.90300 5.04704 5.11696 5.22586 5.25105 5.28687 5.59232 5.66681 5.74622 5.90711 6.26758 7.07498 7.16034 7.75020 8.17895 9.15504 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.021598 B = 0.003396 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.126789 B = 8243.534538 C = 8820.759590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.590 5.590 3 C -0.274 4.274 4 H 0.066 0.934 5 C -0.039 4.039 6 N -0.929 5.929 7 Si 0.968 3.032 8 H -0.289 1.289 9 H -0.286 1.286 10 H -0.273 1.273 11 C 0.145 3.855 12 H 0.090 0.910 13 C -0.135 4.135 14 C 0.115 3.885 15 N -0.576 5.576 16 C 0.142 3.858 17 C -0.095 4.095 18 C -0.088 4.088 19 C -0.024 4.024 20 Cl -0.044 7.044 21 C -0.094 4.094 22 C -0.032 4.032 23 Cl -0.048 7.048 24 C 0.516 3.484 25 O -0.567 6.567 26 H 0.021 0.979 27 H 0.020 0.980 28 H 0.016 0.984 29 H 0.252 0.748 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.169 0.831 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 -20.534 3.353 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.313 5.313 3 C -0.404 4.404 4 H 0.083 0.917 5 C -0.235 4.235 6 N -0.574 5.574 7 Si 0.796 3.204 8 H -0.215 1.215 9 H -0.213 1.213 10 H -0.198 1.198 11 C 0.033 3.967 12 H 0.108 0.892 13 C -0.175 4.175 14 C -0.006 4.006 15 N -0.307 5.307 16 C 0.051 3.949 17 C -0.115 4.115 18 C -0.107 4.107 19 C -0.051 4.051 20 Cl -0.015 7.015 21 C -0.114 4.114 22 C -0.060 4.060 23 Cl -0.019 7.019 24 C 0.304 3.696 25 O -0.443 6.443 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.035 0.965 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.162 0.838 35 H 0.187 0.813 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.126 -20.452 3.921 21.229 hybrid contribution 0.406 1.133 0.197 1.219 sum -3.721 -19.319 4.118 20.100 Atomic orbital electron populations 1.20576 0.81868 0.95704 0.98009 1.43826 1.02186 0.99908 1.85339 1.19464 0.98226 0.86483 1.36225 0.91657 1.25653 0.98297 1.01359 0.98179 1.70173 1.18849 1.27838 1.40546 0.85341 0.78000 0.79524 0.77540 1.21478 1.21260 1.19809 1.21152 0.97695 0.86073 0.91792 0.89220 1.23099 0.99060 0.97708 0.97642 1.22359 0.99567 1.01887 0.76762 1.45739 1.46120 1.28895 1.09958 1.17592 0.93803 0.88169 0.95289 1.21471 0.94089 1.00307 0.95641 1.21293 1.01268 0.90817 0.97336 1.20854 0.95021 0.92417 0.96797 1.98394 1.83736 1.55916 1.63408 1.20990 0.94815 1.00117 0.95467 1.21238 0.90140 0.95251 0.99409 1.98382 1.29689 1.95143 1.78720 1.22455 0.76850 0.79785 0.90553 1.90609 1.58271 1.71790 1.23659 0.96041 0.96171 0.96541 0.93919 0.89273 0.87895 0.87873 0.90474 0.83821 0.81328 0.81666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.67 7.70 127.77 0.98 9.66 16 2 N -0.59 -29.07 2.87 -702.84 -2.01 -31.09 16 3 C -0.27 -15.08 9.62 84.03 0.81 -14.27 16 4 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 5 C -0.04 -2.13 5.11 84.86 0.43 -1.70 16 6 N -0.93 -52.53 10.61 21.65 0.23 -52.30 16 7 Si 0.97 44.76 29.57 68.60 2.03 46.79 16 8 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 9 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 C 0.14 5.87 3.50 44.98 0.16 6.03 16 12 H 0.09 3.74 7.92 -2.39 -0.02 3.73 16 13 C -0.14 -4.08 6.54 31.77 0.21 -3.88 16 14 C 0.11 3.01 6.38 86.95 0.56 3.56 16 15 N -0.58 -18.02 2.02 -626.91 -1.27 -19.29 16 16 C 0.14 3.97 5.38 38.14 0.21 4.17 16 17 C -0.10 -2.31 9.97 22.39 0.22 -2.09 16 18 C -0.09 -1.66 9.82 22.28 0.22 -1.44 16 19 C -0.02 -0.44 6.32 22.34 0.14 -0.30 16 20 Cl -0.04 -0.69 28.95 -2.72 -0.08 -0.77 16 21 C -0.09 -1.87 9.61 22.30 0.21 -1.66 16 22 C -0.03 -0.79 6.34 22.44 0.14 -0.64 16 23 Cl -0.05 -1.18 28.44 -2.72 -0.08 -1.26 16 24 C 0.52 20.77 6.67 87.90 0.59 21.35 16 25 O -0.57 -27.47 17.71 -3.07 -0.05 -27.53 16 26 H 0.02 1.05 7.56 -2.39 -0.02 1.03 16 27 H 0.02 0.83 5.74 -2.39 -0.01 0.82 16 28 H 0.02 0.86 7.02 -2.38 -0.02 0.84 16 29 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 30 H 0.09 2.95 8.08 -2.38 -0.02 2.93 16 31 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.08 2.03 7.13 -2.39 -0.02 2.01 16 34 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 35 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -67.08 334.49 4.76 -62.32 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.11 Total: 4.33 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 4.88 Total: 18.79 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -3.05 Total: -102.68 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.05 Total: -27.53 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.16 Total: -2.03 kcal Total: -67.08 4.76 -62.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190508548.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.996 kcal (2) G-P(sol) polarization free energy of solvation -67.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds