Wall clock time and date at job start Tue Mar 31 2020 15:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00211 * 2 1 4 4 H 1.08005 * 120.00216 * 154.74027 * 3 2 1 5 5 C 1.38818 * 119.99804 * 334.74384 * 3 2 1 6 6 N 1.31618 * 119.99903 * 4.29303 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 184.29037 * 5 3 2 8 8 H 1.48491 * 109.47600 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.46884 * 120.00248 * 7 5 3 10 10 H 1.48507 * 109.46690 * 239.99647 * 7 5 3 11 11 C 1.46503 * 119.99778 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.43508 * 181.08506 * 11 2 1 13 13 C 1.54632 * 110.48775 * 303.77033 * 11 2 1 14 14 C 1.54480 * 101.76322 * 143.47936 * 13 11 2 15 15 N 1.46769 * 105.47234 * 334.58367 * 14 13 11 16 16 C 1.40029 * 124.34183 * 196.99651 * 15 14 13 17 17 C 1.38837 * 120.05930 * 269.72079 * 16 15 14 18 18 C 1.38116 * 119.95279 * 179.72961 * 17 16 15 19 19 C 1.38402 * 120.08152 * 0.53234 * 18 17 16 20 20 Cl 1.73598 * 119.94227 * 179.74901 * 19 18 17 21 21 C 1.38371 * 120.11792 * 359.76522 * 19 18 17 22 22 C 1.38220 * 120.04105 * 359.96081 * 21 19 18 23 23 Cl 1.73605 * 120.03538 * 180.02562 * 22 21 19 24 24 C 1.34415 * 111.30032 * 17.01873 * 15 14 13 25 25 O 1.21288 * 124.93751 * 179.55360 * 24 15 14 26 26 H 1.08998 * 109.47058 * 84.51212 * 1 2 3 27 27 H 1.09001 * 109.47589 * 324.51059 * 1 2 3 28 28 H 1.09008 * 109.47240 * 204.50766 * 1 2 3 29 29 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 30 30 H 1.08999 * 110.97010 * 261.59907 * 13 11 2 31 31 H 1.08996 * 110.96629 * 25.35867 * 13 11 2 32 32 H 1.08999 * 110.24185 * 215.58473 * 14 13 11 33 33 H 1.09000 * 110.32042 * 93.62415 * 14 13 11 34 34 H 1.08000 * 120.02917 * 0.02562 * 17 16 15 35 35 H 1.08000 * 119.96146 * 180.25516 * 18 17 16 36 36 H 1.07994 * 119.97192 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1523 1.2306 0.3991 5 6 1.5551 2.3306 -0.5129 6 7 0.3044 2.2960 -0.9214 7 14 2.5302 3.9201 -0.6233 8 1 3.9026 3.6961 -0.1025 9 1 2.6034 4.3585 -2.0403 10 1 1.8594 4.9694 0.1855 11 6 2.1974 -1.2688 -0.0006 12 1 3.2721 -1.0878 0.0189 13 6 1.7707 -2.1406 1.2031 14 6 1.8099 -3.5596 0.5938 15 7 1.6053 -3.3726 -0.8475 16 6 1.2330 -4.3929 -1.7314 17 6 2.2065 -5.1477 -2.3719 18 6 1.8367 -6.1571 -3.2390 19 6 0.4973 -6.4098 -3.4787 20 17 0.0367 -7.6752 -4.5743 21 6 -0.4755 -5.6554 -2.8468 22 6 -0.1112 -4.6477 -1.9737 23 17 -1.3318 -3.7018 -1.1805 24 6 1.8218 -2.0965 -1.2098 25 8 1.7300 -1.6707 -2.3418 26 1 -0.3633 0.0983 -1.0229 27 1 -0.3634 0.8367 0.5966 28 1 -0.3634 -0.9351 0.4263 29 1 -0.1109 3.0957 -1.2802 30 1 2.4826 -2.0485 2.0234 31 1 0.7635 -1.8850 1.5322 32 1 1.0107 -4.1718 1.0119 33 1 2.7777 -4.0250 0.7803 34 1 3.2521 -4.9489 -2.1886 35 1 2.5938 -6.7471 -3.7342 36 1 -1.5200 -5.8543 -3.0358 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190508565.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:05 Heat of formation + Delta-G solvation = 22.152591 kcal Electronic energy + Delta-G solvation = -23570.081441 eV Core-core repulsion = 19914.391882 eV Total energy + Delta-G solvation = -3655.689559 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.57094 -38.94828 -36.88845 -36.34081 -35.86955 -35.19150 -32.44571 -31.16007 -30.52195 -28.36084 -26.69880 -25.92020 -23.31980 -23.10027 -22.53120 -20.62482 -19.14213 -17.63735 -17.16151 -16.73087 -16.38715 -15.44630 -15.26451 -14.94929 -14.26122 -14.11756 -13.87179 -13.57435 -13.44980 -13.19137 -12.86283 -12.58370 -12.39176 -12.19068 -11.97535 -11.77863 -11.56478 -11.21780 -11.18251 -10.94933 -10.89580 -10.71708 -10.50897 -10.38927 -9.97709 -9.91174 -9.38654 -9.12800 -8.70122 -8.64636 -8.49689 -6.79386 -5.77227 -3.24651 0.71122 0.88006 1.67828 2.18439 3.07877 3.18520 3.27359 3.38974 3.45003 3.46987 4.45659 4.49701 4.71590 4.91321 4.98128 4.98543 5.16776 5.20535 5.42233 5.47408 5.49583 5.54827 5.68107 5.80392 5.83034 5.94524 6.11360 6.19570 6.33067 6.57586 6.78836 7.03478 7.41848 7.45615 7.75687 7.86172 8.34333 8.82046 9.19298 9.77427 10.26311 11.26758 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.003404 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.895304 B = 8223.583893 C = 8242.651924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.570 5.570 3 C -0.264 4.264 4 H 0.074 0.926 5 C 0.013 3.987 6 N -0.898 5.898 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.289 1.289 11 C 0.154 3.846 12 H 0.101 0.899 13 C -0.149 4.149 14 C 0.116 3.884 15 N -0.598 5.598 16 C 0.174 3.826 17 C -0.091 4.091 18 C -0.100 4.100 19 C -0.028 4.028 20 Cl -0.063 7.063 21 C -0.099 4.099 22 C -0.024 4.024 23 Cl -0.037 7.037 24 C 0.501 3.499 25 O -0.503 6.503 26 H 0.028 0.972 27 H 0.058 0.942 28 H -0.006 1.006 29 H 0.254 0.746 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.932 -20.297 0.904 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.290 5.290 3 C -0.393 4.393 4 H 0.092 0.908 5 C -0.187 4.187 6 N -0.541 5.541 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.214 1.214 10 H -0.216 1.216 11 C 0.040 3.960 12 H 0.119 0.881 13 C -0.189 4.189 14 C -0.007 4.007 15 N -0.334 5.334 16 C 0.082 3.918 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.055 4.055 20 Cl -0.034 7.034 21 C -0.119 4.119 22 C -0.053 4.053 23 Cl -0.008 7.008 24 C 0.288 3.712 25 O -0.373 6.373 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.013 0.987 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.586 -19.857 0.162 19.866 hybrid contribution 0.150 0.701 -0.375 0.809 sum 0.735 -19.156 -0.213 19.171 Atomic orbital electron populations 1.20918 0.81649 0.95451 0.99804 1.43828 1.02125 0.99131 1.83939 1.19263 0.99782 0.85501 1.34794 0.90841 1.25243 0.96496 0.99045 0.97873 1.70110 1.11086 1.28037 1.44901 0.86161 0.79547 0.83148 0.77537 1.20161 1.21441 1.21636 1.21136 0.98312 0.86865 0.89657 0.88111 1.23171 1.04054 0.92478 0.99203 1.22069 1.01000 0.99040 0.78542 1.46127 1.71052 1.07909 1.08312 1.17409 0.89885 0.90659 0.93818 1.21325 1.00011 0.94164 0.95588 1.21008 0.94277 0.98210 0.98475 1.20729 0.93973 0.94019 0.96778 1.98377 1.92727 1.50262 1.62023 1.20813 1.00329 0.94551 0.96207 1.21304 0.90200 0.95546 0.98276 1.98419 1.53133 1.70890 1.78369 1.23237 0.75146 0.80562 0.92210 1.90676 1.49763 1.73804 1.23055 0.95340 0.92384 0.98737 0.93554 0.89586 0.89518 0.91239 0.91378 0.83871 0.84022 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.18 8.17 59.84 0.49 4.67 16 2 N -0.57 -14.27 2.91 -173.49 -0.50 -14.77 16 3 C -0.26 -7.20 9.61 -15.06 -0.14 -7.35 16 4 H 0.07 1.91 7.82 -52.48 -0.41 1.50 16 5 C 0.01 0.36 5.38 -17.43 -0.09 0.27 16 6 N -0.90 -26.52 10.11 55.49 0.56 -25.96 16 7 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 8 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 C 0.15 3.09 3.42 -67.94 -0.23 2.86 16 12 H 0.10 1.94 7.93 -51.93 -0.41 1.53 16 13 C -0.15 -2.22 6.67 -25.10 -0.17 -2.39 16 14 C 0.12 1.45 7.28 -3.12 -0.02 1.43 16 15 N -0.60 -9.59 2.34 -112.22 -0.26 -9.86 16 16 C 0.17 2.57 5.38 -83.63 -0.45 2.12 16 17 C -0.09 -1.10 9.97 -39.40 -0.39 -1.49 16 18 C -0.10 -1.05 9.82 -39.57 -0.39 -1.43 16 19 C -0.03 -0.31 6.32 -39.47 -0.25 -0.56 16 20 Cl -0.06 -0.61 28.95 -51.86 -1.50 -2.11 16 21 C -0.10 -1.20 9.61 -39.54 -0.38 -1.58 16 22 C -0.02 -0.35 6.34 -39.33 -0.25 -0.60 16 23 Cl -0.04 -0.58 28.44 -51.86 -1.47 -2.05 16 24 C 0.50 10.43 7.10 -10.86 -0.08 10.35 16 25 O -0.50 -12.97 17.70 5.55 0.10 -12.87 16 26 H 0.03 0.82 7.45 -51.93 -0.39 0.43 16 27 H 0.06 1.56 7.02 -51.93 -0.36 1.20 16 28 H -0.01 -0.13 6.30 -51.92 -0.33 -0.45 16 29 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.09 1.40 6.21 -51.93 -0.32 1.08 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -33.06 336.04 -9.30 -42.36 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -3.89 Total: -2.97 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -2.36 Total: 6.30 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.21 Total: -50.59 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.10 Total: -12.87 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -2.98 Total: -4.16 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.06 -9.30 -42.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190508565.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.511 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds