Wall clock time and date at job start Tue Mar 31 2020 15:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36935 * 120.00211 * 2 1 4 4 H 1.08005 * 120.00216 * 154.74027 * 3 2 1 5 5 C 1.38818 * 119.99804 * 334.74384 * 3 2 1 6 6 N 1.31618 * 119.99903 * 4.29303 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 184.29037 * 5 3 2 8 8 H 1.48491 * 109.47600 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.46884 * 120.00248 * 7 5 3 10 10 H 1.48507 * 109.46690 * 239.99647 * 7 5 3 11 11 C 1.46503 * 119.99778 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.43508 * 181.08506 * 11 2 1 13 13 C 1.54632 * 110.48775 * 303.77033 * 11 2 1 14 14 C 1.54480 * 101.76322 * 143.47936 * 13 11 2 15 15 N 1.46769 * 105.47234 * 334.58367 * 14 13 11 16 16 C 1.40029 * 124.34183 * 196.99651 * 15 14 13 17 17 C 1.38837 * 120.05930 * 269.72079 * 16 15 14 18 18 C 1.38116 * 119.95279 * 179.72961 * 17 16 15 19 19 C 1.38402 * 120.08152 * 0.53234 * 18 17 16 20 20 Cl 1.73598 * 119.94227 * 179.74901 * 19 18 17 21 21 C 1.38371 * 120.11792 * 359.76522 * 19 18 17 22 22 C 1.38220 * 120.04105 * 359.96081 * 21 19 18 23 23 Cl 1.73605 * 120.03538 * 180.02562 * 22 21 19 24 24 C 1.34415 * 111.30032 * 17.01873 * 15 14 13 25 25 O 1.21288 * 124.93751 * 179.55360 * 24 15 14 26 26 H 1.08998 * 109.47058 * 84.51212 * 1 2 3 27 27 H 1.09001 * 109.47589 * 324.51059 * 1 2 3 28 28 H 1.09008 * 109.47240 * 204.50766 * 1 2 3 29 29 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 30 30 H 1.08999 * 110.97010 * 261.59907 * 13 11 2 31 31 H 1.08996 * 110.96629 * 25.35867 * 13 11 2 32 32 H 1.08999 * 110.24185 * 215.58473 * 14 13 11 33 33 H 1.09000 * 110.32042 * 93.62415 * 14 13 11 34 34 H 1.08000 * 120.02917 * 0.02562 * 17 16 15 35 35 H 1.08000 * 119.96146 * 180.25516 * 18 17 16 36 36 H 1.07994 * 119.97192 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1523 1.2306 0.3991 5 6 1.5551 2.3306 -0.5129 6 7 0.3044 2.2960 -0.9214 7 14 2.5302 3.9201 -0.6233 8 1 3.9026 3.6961 -0.1025 9 1 2.6034 4.3585 -2.0403 10 1 1.8594 4.9694 0.1855 11 6 2.1974 -1.2688 -0.0006 12 1 3.2721 -1.0878 0.0189 13 6 1.7707 -2.1406 1.2031 14 6 1.8099 -3.5596 0.5938 15 7 1.6053 -3.3726 -0.8475 16 6 1.2330 -4.3929 -1.7314 17 6 2.2065 -5.1477 -2.3719 18 6 1.8367 -6.1571 -3.2390 19 6 0.4973 -6.4098 -3.4787 20 17 0.0367 -7.6752 -4.5743 21 6 -0.4755 -5.6554 -2.8468 22 6 -0.1112 -4.6477 -1.9737 23 17 -1.3318 -3.7018 -1.1805 24 6 1.8218 -2.0965 -1.2098 25 8 1.7300 -1.6707 -2.3418 26 1 -0.3633 0.0983 -1.0229 27 1 -0.3634 0.8367 0.5966 28 1 -0.3634 -0.9351 0.4263 29 1 -0.1109 3.0957 -1.2802 30 1 2.4826 -2.0485 2.0234 31 1 0.7635 -1.8850 1.5322 32 1 1.0107 -4.1718 1.0119 33 1 2.7777 -4.0250 0.7803 34 1 3.2521 -4.9489 -2.1886 35 1 2.5938 -6.7471 -3.7342 36 1 -1.5200 -5.8543 -3.0358 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190508565.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:05 Heat of formation + Delta-G solvation = 2.956534 kcal Electronic energy + Delta-G solvation = -23570.913844 eV Core-core repulsion = 19914.391882 eV Total energy + Delta-G solvation = -3656.521962 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87607 -40.10355 -37.85921 -37.55784 -37.43160 -36.79870 -34.00529 -32.24868 -32.04046 -29.58551 -28.36051 -27.85306 -24.64979 -24.15974 -23.96270 -22.01134 -20.58736 -19.04245 -18.78755 -17.88730 -17.67272 -17.05211 -16.76982 -15.97602 -15.83008 -15.28706 -15.13438 -15.00567 -14.81227 -14.70728 -14.48194 -13.92933 -13.65370 -13.39769 -13.37265 -13.06309 -12.98410 -12.81927 -12.50255 -12.40650 -12.20668 -12.17591 -12.08139 -12.00922 -11.84572 -11.69339 -11.01199 -10.60354 -10.11504 -9.93289 -9.73991 -8.78664 -7.86790 -5.36333 -0.28148 -0.06406 0.73537 1.16040 1.44006 1.48480 1.57364 1.60930 1.96098 2.23256 2.49582 3.29976 3.48433 3.57275 3.83779 3.87626 3.92022 3.99610 4.04362 4.20536 4.27503 4.52135 4.56634 4.66433 4.72439 4.77161 4.92292 5.07999 5.17698 5.26106 5.27813 5.36829 5.61576 5.72198 5.82670 6.01329 6.29866 7.09553 7.30089 7.78768 8.23288 9.17152 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.003404 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.895304 B = 8223.583893 C = 8242.651924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.194 3.806 2 N -0.590 5.590 3 C -0.268 4.268 4 H 0.086 0.914 5 C -0.051 4.051 6 N -0.937 5.937 7 Si 0.972 3.028 8 H -0.257 1.257 9 H -0.299 1.299 10 H -0.288 1.288 11 C 0.140 3.860 12 H 0.108 0.892 13 C -0.134 4.134 14 C 0.115 3.885 15 N -0.585 5.585 16 C 0.143 3.857 17 C -0.089 4.089 18 C -0.088 4.088 19 C -0.026 4.026 20 Cl -0.046 7.046 21 C -0.100 4.100 22 C -0.041 4.041 23 Cl -0.058 7.058 24 C 0.500 3.500 25 O -0.566 6.566 26 H -0.019 1.019 27 H 0.032 0.968 28 H 0.022 0.978 29 H 0.247 0.753 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.161 0.839 35 H 0.174 0.826 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.885 -23.057 1.665 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.311 5.311 3 C -0.398 4.398 4 H 0.104 0.896 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.800 3.200 8 H -0.181 1.181 9 H -0.227 1.227 10 H -0.215 1.215 11 C 0.029 3.971 12 H 0.126 0.874 13 C -0.173 4.173 14 C -0.006 4.006 15 N -0.318 5.318 16 C 0.052 3.948 17 C -0.108 4.108 18 C -0.107 4.107 19 C -0.053 4.053 20 Cl -0.017 7.017 21 C -0.120 4.120 22 C -0.070 4.070 23 Cl -0.029 7.029 24 C 0.288 3.712 25 O -0.442 6.442 26 H -0.001 1.001 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.138 0.862 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.179 0.821 35 H 0.192 0.808 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.570 -22.717 0.983 22.883 hybrid contribution -0.426 1.298 -0.650 1.513 sum 2.144 -21.419 0.333 21.528 Atomic orbital electron populations 1.20422 0.82537 0.95624 0.96523 1.43933 1.01924 1.00541 1.84689 1.19717 0.99981 0.86542 1.33535 0.89598 1.26065 0.97426 1.02591 0.98516 1.70317 1.12731 1.28362 1.46903 0.85125 0.79038 0.79221 0.76607 1.18081 1.22693 1.21486 1.21461 0.98363 0.85714 0.91606 0.87423 1.23074 1.03984 0.92357 0.97871 1.22386 1.04082 0.97929 0.76166 1.45895 1.69120 1.06817 1.09925 1.17680 0.90684 0.91370 0.95074 1.21520 1.00285 0.93917 0.95100 1.21353 0.94709 0.97379 0.97244 1.20872 0.94148 0.93933 0.96381 1.98391 1.92680 1.49308 1.61305 1.20961 1.01415 0.94013 0.95623 1.21418 0.89733 0.96402 0.99437 1.98409 1.53995 1.71649 1.78879 1.23016 0.74719 0.82264 0.91181 1.90638 1.52910 1.75413 1.25283 1.00091 0.94954 0.95942 0.94403 0.86163 0.90943 0.89242 0.87238 0.82133 0.80813 0.82486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.20 8.17 127.77 1.04 11.25 16 2 N -0.59 -30.01 2.91 -702.80 -2.04 -32.05 16 3 C -0.27 -14.79 9.61 84.04 0.81 -13.98 16 4 H 0.09 4.40 7.82 -2.91 -0.02 4.38 16 5 C -0.05 -2.93 5.38 84.86 0.46 -2.48 16 6 N -0.94 -58.05 10.11 21.65 0.22 -57.83 16 7 Si 0.97 45.99 29.56 68.60 2.03 48.02 16 8 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 9 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 10 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 11 C 0.14 5.53 3.42 44.98 0.15 5.68 16 12 H 0.11 4.02 7.93 -2.39 -0.02 4.00 16 13 C -0.13 -3.62 6.67 31.65 0.21 -3.41 16 14 C 0.11 2.48 7.28 86.83 0.63 3.12 16 15 N -0.58 -17.81 2.34 -627.55 -1.47 -19.27 16 16 C 0.14 3.99 5.38 38.14 0.21 4.20 16 17 C -0.09 -1.90 9.97 22.38 0.22 -1.67 16 18 C -0.09 -1.53 9.82 22.28 0.22 -1.31 16 19 C -0.03 -0.51 6.32 22.34 0.14 -0.37 16 20 Cl -0.05 -0.76 28.95 -2.72 -0.08 -0.84 16 21 C -0.10 -2.27 9.61 22.30 0.21 -2.06 16 22 C -0.04 -1.15 6.34 22.43 0.14 -1.01 16 23 Cl -0.06 -1.81 28.44 -2.72 -0.08 -1.89 16 24 C 0.50 20.78 7.10 87.90 0.62 21.41 16 25 O -0.57 -30.18 17.70 -3.05 -0.05 -30.24 16 26 H -0.02 -1.20 7.45 -2.39 -0.02 -1.22 16 27 H 0.03 1.82 7.02 -2.39 -0.02 1.80 16 28 H 0.02 1.02 6.30 -2.38 -0.02 1.00 16 29 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.07 2.21 6.21 -2.39 -0.01 2.19 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -76.88 336.04 4.71 -72.16 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.12 Total: 2.60 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 5.07 Total: 19.35 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -3.29 Total: -109.16 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.05 Total: -30.24 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -0.16 Total: -2.73 kcal Total: -76.88 4.71 -72.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190508565.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.117 kcal (2) G-P(sol) polarization free energy of solvation -76.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds