Wall clock time and date at job start Tue Mar 31 2020 15:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42895 * 112.94629 * 48.42918 * 9 7 2 11 11 C 1.53942 * 113.73113 * 276.71995 * 9 7 2 12 12 N 1.47958 * 86.18241 * 221.92438 * 11 9 7 13 13 C 1.46895 * 110.99863 * 137.58381 * 12 11 9 14 14 C 1.50697 * 109.47143 * 70.64193 * 13 12 11 15 15 C 1.38173 * 120.02319 * 259.72643 * 14 13 12 16 16 C 1.38340 * 120.04300 * 179.69984 * 15 14 13 17 17 Cl 1.73598 * 119.95666 * 180.30017 * 16 15 14 18 18 C 1.38393 * 120.08590 * 0.59490 * 16 15 14 19 19 C 1.38120 * 120.03942 * 359.68074 * 18 16 15 20 20 N 1.48005 * 120.01765 * 180.02562 * 19 18 16 21 21 O 1.21805 * 120.00259 * 359.97438 * 20 19 18 22 22 O 1.21802 * 120.00095 * 179.97438 * 20 19 18 23 23 C 1.38702 * 120.02298 * 79.99963 * 14 13 12 24 24 O 1.35922 * 120.04113 * 0.02562 * 23 14 13 25 25 C 1.47961 * 90.76178 * 24.68871 * 12 11 9 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00066 * 309.67107 * 10 9 7 28 28 H 1.08993 * 113.75791 * 336.24977 * 11 9 7 29 29 H 1.09005 * 113.75626 * 107.60779 * 11 9 7 30 30 H 1.09005 * 109.47184 * 190.63870 * 13 12 11 31 31 H 1.08999 * 109.47715 * 310.64276 * 13 12 11 32 32 H 1.08000 * 119.97665 * 359.97438 * 15 14 13 33 33 H 1.07995 * 119.97909 * 179.70653 * 18 16 15 34 34 H 0.96696 * 113.99870 * 89.99901 * 24 23 14 35 35 H 1.08996 * 113.76309 * 220.98440 * 25 12 11 36 36 H 1.09008 * 113.85816 * 89.63955 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0682 -0.3216 0.9853 11 6 4.1316 -1.0282 -1.3992 12 7 5.0974 -2.0703 -0.9863 13 6 5.3281 -3.0336 -2.0711 14 6 6.1157 -2.3712 -3.1720 15 6 5.4697 -1.9102 -4.3031 16 6 6.1915 -1.2965 -5.3112 17 17 5.3765 -0.7113 -6.7279 18 6 7.5631 -1.1540 -5.1945 19 6 8.2131 -1.6185 -4.0679 20 7 9.6799 -1.4653 -3.9433 21 8 10.3143 -0.9298 -4.8347 22 8 10.2528 -1.8747 -2.9494 23 6 7.4902 -2.2288 -3.0530 24 8 8.1283 -2.6870 -1.9438 25 6 4.1311 -2.6032 -0.0006 26 1 -0.4850 0.8401 0.0004 27 1 3.7022 0.5733 0.9700 28 1 3.4728 -1.3367 -2.2108 29 1 4.5846 -0.0508 -1.5657 30 1 5.8876 -3.8865 -1.6868 31 1 4.3704 -3.3746 -2.4642 32 1 4.4001 -2.0252 -4.3983 33 1 8.1254 -0.6788 -5.9847 34 1 8.4278 -3.6038 -2.0129 35 1 4.5837 -2.8845 0.9502 36 1 3.4714 -3.3728 -0.4015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191914387.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:34 Heat of formation + Delta-G solvation = -15.080568 kcal Electronic energy + Delta-G solvation = -25927.549001 eV Core-core repulsion = 21829.535727 eV Total energy + Delta-G solvation = -4098.013274 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.39002 -40.60424 -39.26511 -37.78751 -36.76278 -36.37752 -35.21231 -32.94353 -32.52007 -30.91320 -28.63200 -26.78388 -26.17355 -25.56490 -23.36546 -22.84910 -21.44413 -19.37566 -19.25261 -18.84185 -18.63792 -17.68533 -17.43535 -16.79663 -16.39473 -16.27919 -15.67104 -15.40314 -14.65972 -14.54344 -13.91761 -13.46076 -13.37719 -13.34578 -12.93717 -12.83076 -12.28806 -12.11273 -11.87499 -11.73261 -11.66910 -11.50446 -11.41765 -11.23402 -11.08486 -10.84655 -10.72016 -10.59810 -10.09149 -9.96715 -9.43146 -9.17946 -8.96290 -8.71358 -8.20366 -6.42945 -4.47973 -0.45494 0.32292 1.02332 1.08184 1.61474 2.66436 3.00275 3.05967 3.15175 3.38994 3.91838 4.04058 4.25226 4.33160 4.33558 4.54810 4.72160 4.86050 4.98714 5.07225 5.31083 5.36763 5.41277 5.51929 5.72403 5.74351 5.76238 5.99666 6.18552 6.30784 6.46648 6.71846 6.72333 7.12203 7.22604 7.50415 7.50730 8.04065 8.57573 8.58956 9.16480 10.69426 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.004131 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.124748 B = 6776.255975 C = 7756.134865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.080 3.920 3 Si 0.857 3.143 4 H -0.266 1.266 5 H -0.255 1.255 6 H -0.285 1.285 7 C -0.539 4.539 8 H 0.086 0.914 9 C 0.204 3.796 10 O -0.550 6.550 11 C -0.034 4.034 12 N -0.465 5.465 13 C 0.062 3.938 14 C -0.085 4.085 15 C -0.037 4.037 16 C -0.048 4.048 17 Cl -0.038 7.038 18 C -0.042 4.042 19 C -0.071 4.071 20 N 0.035 4.965 21 O -0.174 6.174 22 O -0.132 6.132 23 C 0.208 3.792 24 O -0.453 6.453 25 C 0.025 3.975 26 H 0.270 0.730 27 H 0.348 0.652 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.401 0.599 35 H 0.085 0.915 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.831 -5.995 -12.007 17.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.125 4.125 3 Si 0.686 3.314 4 H -0.193 1.193 5 H -0.180 1.180 6 H -0.212 1.212 7 C -0.577 4.577 8 H 0.104 0.896 9 C 0.163 3.837 10 O -0.360 6.360 11 C -0.163 4.163 12 N -0.187 5.187 13 C -0.066 4.066 14 C -0.087 4.087 15 C -0.057 4.057 16 C -0.076 4.076 17 Cl -0.009 7.009 18 C -0.061 4.061 19 C -0.155 4.155 20 N 0.555 4.445 21 O -0.385 6.385 22 O -0.353 6.353 23 C 0.160 3.840 24 O -0.265 6.265 25 C -0.103 4.103 26 H 0.080 0.920 27 H 0.200 0.800 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.175 0.825 33 H 0.182 0.818 34 H 0.261 0.739 35 H 0.103 0.897 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.778 -5.705 -11.662 17.529 hybrid contribution -0.361 0.889 -0.873 1.297 sum 11.417 -4.817 -12.535 17.626 Atomic orbital electron populations 1.69866 1.06102 1.27556 1.48073 1.24990 0.94858 0.99037 0.93570 0.87346 0.80487 0.84287 0.79269 1.19291 1.18029 1.21192 1.21372 0.88369 0.95371 1.52583 0.89552 1.20406 0.92090 0.87429 0.83814 1.86477 1.67436 1.24005 1.58116 1.25107 0.93388 0.96072 1.01727 1.68791 1.34524 1.07538 1.07855 1.21542 0.98098 0.96097 0.90897 1.20240 0.92088 1.00355 0.96007 1.21464 1.01710 0.92045 0.90469 1.20544 0.91655 1.03345 0.92036 1.98418 1.78303 1.86864 1.37289 1.20691 0.93128 0.96088 0.96242 1.21448 0.80895 1.13822 0.99347 1.43270 1.02648 0.98544 1.00057 1.94541 1.65812 1.43880 1.34222 1.94588 1.70745 1.49897 1.20098 1.17989 0.89846 0.92500 0.83695 1.84966 1.75569 1.33676 1.32254 1.24052 0.92381 0.97426 0.96456 0.92000 0.79996 0.90901 0.90941 0.89318 0.92218 0.82486 0.81840 0.73883 0.89656 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.83 13.96 55.43 0.77 -24.06 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.86 19.53 24.34 -169.99 -4.14 15.39 16 4 H -0.27 -5.94 7.06 56.52 0.40 -5.54 16 5 H -0.26 -5.57 5.27 56.52 0.30 -5.27 16 6 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.54 -13.96 9.20 -34.44 -0.32 -14.28 16 8 H 0.09 2.38 8.06 -52.49 -0.42 1.96 16 9 C 0.20 4.60 1.05 -90.84 -0.10 4.50 16 10 O -0.55 -13.26 13.32 -35.23 -0.47 -13.72 16 11 C -0.03 -0.66 5.91 -2.76 -0.02 -0.68 16 12 N -0.46 -8.12 6.25 -239.68 -1.50 -9.62 16 13 C 0.06 0.79 4.62 -4.98 -0.02 0.77 16 14 C -0.08 -1.01 4.97 -104.48 -0.52 -1.53 16 15 C -0.04 -0.40 9.27 -39.57 -0.37 -0.77 16 16 C -0.05 -0.50 6.32 -39.49 -0.25 -0.75 16 17 Cl -0.04 -0.36 28.95 -51.86 -1.50 -1.86 16 18 C -0.04 -0.45 9.33 -39.57 -0.37 -0.82 16 19 C -0.07 -0.87 6.86 -79.81 -0.55 -1.42 16 20 N 0.03 0.48 4.45 34.03 0.15 0.64 16 21 O -0.17 -2.47 18.45 -29.46 -0.54 -3.02 16 22 O -0.13 -1.92 17.24 -36.49 -0.63 -2.55 16 23 C 0.21 2.55 6.66 -39.22 -0.26 2.29 16 24 O -0.45 -5.42 10.75 -41.62 -0.45 -5.87 16 25 C 0.02 0.47 7.36 -2.77 -0.02 0.45 16 26 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.35 8.13 3.32 45.56 0.15 8.28 16 28 H 0.07 1.35 7.73 -51.93 -0.40 0.95 16 29 H 0.07 1.50 6.97 -51.93 -0.36 1.14 16 30 H 0.09 0.96 7.85 -51.93 -0.41 0.55 16 31 H 0.06 0.71 7.55 -51.93 -0.39 0.32 16 32 H 0.16 1.51 8.03 -52.49 -0.42 1.09 16 33 H 0.16 1.52 7.61 -52.49 -0.40 1.12 16 34 H 0.40 2.74 9.06 45.56 0.41 3.16 16 35 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.08 1.31 7.75 -51.92 -0.40 0.91 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -30.87 324.58 -8.60 -39.47 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -2.31 Total: 10.52 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.88 Total: -10.20 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: -0.57 Total: -33.05 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -2.09 Total: -25.16 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.14 Total: 15.39 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.87 -8.60 -39.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191914387.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.389 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds