Wall clock time and date at job start Tue Mar 31 2020 15:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42895 * 112.94629 * 48.42918 * 9 7 2 11 11 C 1.53942 * 113.73113 * 276.71995 * 9 7 2 12 12 N 1.47958 * 86.18241 * 221.92438 * 11 9 7 13 13 C 1.46895 * 110.99863 * 137.58381 * 12 11 9 14 14 C 1.50697 * 109.47143 * 70.64193 * 13 12 11 15 15 C 1.38173 * 120.02319 * 259.72643 * 14 13 12 16 16 C 1.38340 * 120.04300 * 179.69984 * 15 14 13 17 17 Cl 1.73598 * 119.95666 * 180.30017 * 16 15 14 18 18 C 1.38393 * 120.08590 * 0.59490 * 16 15 14 19 19 C 1.38120 * 120.03942 * 359.68074 * 18 16 15 20 20 N 1.48005 * 120.01765 * 180.02562 * 19 18 16 21 21 O 1.21805 * 120.00259 * 359.97438 * 20 19 18 22 22 O 1.21802 * 120.00095 * 179.97438 * 20 19 18 23 23 C 1.38702 * 120.02298 * 79.99963 * 14 13 12 24 24 O 1.35922 * 120.04113 * 0.02562 * 23 14 13 25 25 C 1.47961 * 90.76178 * 24.68871 * 12 11 9 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 0.96697 * 114.00066 * 309.67107 * 10 9 7 28 28 H 1.08993 * 113.75791 * 336.24977 * 11 9 7 29 29 H 1.09005 * 113.75626 * 107.60779 * 11 9 7 30 30 H 1.09005 * 109.47184 * 190.63870 * 13 12 11 31 31 H 1.08999 * 109.47715 * 310.64276 * 13 12 11 32 32 H 1.08000 * 119.97665 * 359.97438 * 15 14 13 33 33 H 1.07995 * 119.97909 * 179.70653 * 18 16 15 34 34 H 0.96696 * 113.99870 * 89.99901 * 24 23 14 35 35 H 1.08996 * 113.76309 * 220.98440 * 25 12 11 36 36 H 1.09008 * 113.85816 * 89.63955 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0682 -0.3216 0.9853 11 6 4.1316 -1.0282 -1.3992 12 7 5.0974 -2.0703 -0.9863 13 6 5.3281 -3.0336 -2.0711 14 6 6.1157 -2.3712 -3.1720 15 6 5.4697 -1.9102 -4.3031 16 6 6.1915 -1.2965 -5.3112 17 17 5.3765 -0.7113 -6.7279 18 6 7.5631 -1.1540 -5.1945 19 6 8.2131 -1.6185 -4.0679 20 7 9.6799 -1.4653 -3.9433 21 8 10.3143 -0.9298 -4.8347 22 8 10.2528 -1.8747 -2.9494 23 6 7.4902 -2.2288 -3.0530 24 8 8.1283 -2.6870 -1.9438 25 6 4.1311 -2.6032 -0.0006 26 1 -0.4850 0.8401 0.0004 27 1 3.7022 0.5733 0.9700 28 1 3.4728 -1.3367 -2.2108 29 1 4.5846 -0.0508 -1.5657 30 1 5.8876 -3.8865 -1.6868 31 1 4.3704 -3.3746 -2.4642 32 1 4.4001 -2.0252 -4.3983 33 1 8.1254 -0.6788 -5.9847 34 1 8.4278 -3.6038 -2.0129 35 1 4.5837 -2.8845 0.9502 36 1 3.4714 -3.3728 -0.4015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191914387.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:33 Heat of formation + Delta-G solvation = -39.178938 kcal Electronic energy + Delta-G solvation = -25928.593985 eV Core-core repulsion = 21829.535727 eV Total energy + Delta-G solvation = -4099.058258 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.39903 -41.66820 -40.63806 -38.64106 -37.71036 -37.31342 -36.81075 -34.54428 -34.01310 -31.87469 -30.01206 -27.80595 -27.70717 -27.06830 -24.66169 -23.81066 -22.57982 -20.88790 -20.35085 -19.86903 -19.57030 -19.31460 -18.69732 -18.15715 -17.66213 -17.27831 -16.95695 -16.50939 -16.08343 -15.74301 -15.20257 -14.94629 -14.66362 -14.44164 -14.27499 -14.10198 -13.87595 -13.38796 -12.92846 -12.85594 -12.75317 -12.70304 -12.60215 -12.44115 -12.33700 -12.32187 -12.18133 -11.92152 -11.77753 -11.24683 -11.01189 -10.71266 -10.46648 -10.01141 -9.65300 -8.45625 -6.54310 -1.41666 -0.52980 0.05035 0.12506 0.78628 1.19711 1.24384 1.33284 1.78917 2.13625 2.55036 2.78530 2.96424 3.06102 3.43346 3.46901 3.51842 3.67961 3.86342 4.02676 4.12620 4.16453 4.21356 4.42371 4.53937 4.61484 4.76710 4.78558 4.83182 4.93159 5.10809 5.18997 5.31691 5.34600 6.02064 6.14755 6.41732 6.46138 6.51770 6.75146 7.13857 8.69940 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013496 B = 0.004131 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.124748 B = 6776.255975 C = 7756.134865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.030 3.970 3 Si 0.912 3.088 4 H -0.260 1.260 5 H -0.239 1.239 6 H -0.284 1.284 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.179 3.821 10 O -0.560 6.560 11 C -0.020 4.020 12 N -0.469 5.469 13 C 0.062 3.938 14 C -0.094 4.094 15 C -0.030 4.030 16 C -0.048 4.048 17 Cl -0.028 7.028 18 C -0.032 4.032 19 C -0.084 4.084 20 N 0.036 4.964 21 O -0.182 6.182 22 O -0.152 6.152 23 C 0.212 3.788 24 O -0.469 6.469 25 C 0.034 3.966 26 H 0.271 0.729 27 H 0.348 0.652 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.171 0.829 33 H 0.177 0.823 34 H 0.421 0.579 35 H 0.086 0.914 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.936 -6.093 -13.180 19.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.170 4.170 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.164 1.164 6 H -0.211 1.211 7 C -0.580 4.580 8 H 0.074 0.926 9 C 0.138 3.862 10 O -0.371 6.371 11 C -0.150 4.150 12 N -0.191 5.191 13 C -0.066 4.066 14 C -0.096 4.096 15 C -0.049 4.049 16 C -0.076 4.076 17 Cl 0.001 6.999 18 C -0.052 4.052 19 C -0.169 4.169 20 N 0.553 4.447 21 O -0.392 6.392 22 O -0.370 6.370 23 C 0.164 3.836 24 O -0.284 6.284 25 C -0.094 4.094 26 H 0.081 0.919 27 H 0.200 0.800 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.130 0.870 31 H 0.092 0.908 32 H 0.188 0.812 33 H 0.195 0.805 34 H 0.284 0.716 35 H 0.105 0.895 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.927 -5.841 -12.823 19.122 hybrid contribution -0.741 0.818 -0.543 1.230 sum 12.186 -5.023 -13.366 18.772 Atomic orbital electron populations 1.69994 1.07778 1.28495 1.50156 1.25713 0.95458 1.02471 0.93390 0.86434 0.79843 0.80149 0.79757 1.18547 1.16368 1.21076 1.21595 0.90498 0.94199 1.51678 0.92561 1.20709 0.90278 0.89771 0.85436 1.86474 1.67376 1.24250 1.59032 1.24855 0.93624 0.96686 0.99789 1.68681 1.33108 1.08148 1.09189 1.21611 0.99362 0.95691 0.89921 1.20114 0.91777 1.01433 0.96289 1.21652 1.02377 0.90876 0.89996 1.20524 0.91475 1.03236 0.92324 1.98429 1.78054 1.86721 1.36709 1.20865 0.93362 0.95077 0.95896 1.21518 0.79797 1.15213 1.00338 1.43470 1.03344 0.98145 0.99746 1.94525 1.66445 1.44034 1.34219 1.94580 1.71381 1.50632 1.20410 1.18054 0.90008 0.92092 0.83476 1.84908 1.75674 1.35481 1.32307 1.23985 0.92588 0.95522 0.97328 0.91928 0.79990 0.89900 0.91834 0.87011 0.90816 0.81193 0.80545 0.71556 0.89531 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.17 13.96 21.45 0.30 -52.87 16 2 C 0.03 1.62 5.47 84.66 0.46 2.08 16 3 Si 0.91 39.90 24.34 68.60 1.67 41.57 16 4 H -0.26 -10.99 7.06 99.48 0.70 -10.28 16 5 H -0.24 -9.78 5.27 99.48 0.52 -9.26 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.54 -28.14 9.20 25.60 0.24 -27.91 16 8 H 0.06 3.18 8.06 -2.91 -0.02 3.15 16 9 C 0.18 7.85 1.05 -10.89 -0.01 7.83 16 10 O -0.56 -26.28 13.32 -148.98 -1.98 -28.27 16 11 C -0.02 -0.75 5.91 86.41 0.51 -0.24 16 12 N -0.47 -15.17 6.25 -915.39 -5.72 -20.90 16 13 C 0.06 1.38 4.62 85.56 0.40 1.78 16 14 C -0.09 -1.97 4.97 -19.77 -0.10 -2.07 16 15 C -0.03 -0.55 9.27 22.28 0.21 -0.35 16 16 C -0.05 -0.86 6.32 22.33 0.14 -0.72 16 17 Cl -0.03 -0.47 28.95 -2.72 -0.08 -0.55 16 18 C -0.03 -0.61 9.33 22.28 0.21 -0.41 16 19 C -0.08 -1.91 6.86 36.47 0.25 -1.66 16 20 N 0.04 0.97 4.45 -46.25 -0.21 0.76 16 21 O -0.18 -4.96 18.45 18.88 0.35 -4.61 16 22 O -0.15 -4.31 17.24 25.61 0.44 -3.86 16 23 C 0.21 4.71 6.66 22.50 0.15 4.86 16 24 O -0.47 -10.22 10.75 -71.52 -0.77 -10.99 16 25 C 0.03 1.21 7.36 86.41 0.64 1.85 16 26 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.35 15.71 3.32 -74.06 -0.25 15.47 16 28 H 0.08 2.86 7.73 -2.39 -0.02 2.84 16 29 H 0.06 2.48 6.97 -2.38 -0.02 2.46 16 30 H 0.11 2.01 7.85 -2.38 -0.02 1.99 16 31 H 0.07 1.49 7.55 -2.39 -0.02 1.48 16 32 H 0.17 2.70 8.03 -2.91 -0.02 2.68 16 33 H 0.18 2.85 7.61 -2.91 -0.02 2.82 16 34 H 0.42 4.86 9.06 -74.06 -0.67 4.19 16 35 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.09 2.92 7.75 -2.38 -0.02 2.90 16 Total: -1.00 -66.10 324.58 -2.85 -68.94 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.07 Total: 25.72 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 3.09 Total: -14.95 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -5.63 Total: -73.01 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -1.96 Total: -47.73 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 1.67 Total: 41.57 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -66.10 -2.85 -68.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191914387.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.766 kcal (2) G-P(sol) polarization free energy of solvation -66.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds