Wall clock time and date at job start Tue Mar 31 2020 15:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39659 * 120.15408 * 6.44243 * 3 2 1 5 5 C 1.37922 * 119.84613 * 180.02562 * 4 3 2 6 6 C 1.38384 * 120.15098 * 0.02562 * 5 4 3 7 7 C 1.38335 * 120.31025 * 359.97438 * 6 5 4 8 8 C 1.37967 * 120.14970 * 0.02562 * 7 6 5 9 9 S 1.76204 * 120.07984 * 179.97438 * 8 7 6 10 10 O 1.42099 * 106.40178 * 230.45640 * 9 8 7 11 11 O 1.42100 * 106.39865 * 3.37807 * 9 8 7 12 12 N 1.65598 * 107.21523 * 116.91719 * 9 8 7 13 13 C 1.38740 * 119.99966 * 292.22821 * 12 9 8 14 14 C 1.38746 * 120.29299 * 30.69047 * 13 12 9 15 15 C 1.38168 * 120.02256 * 180.02562 * 14 13 12 16 16 C 1.38895 * 120.62840 * 359.97438 * 15 14 13 17 17 C 1.36447 * 120.59656 * 0.02562 * 16 15 14 18 18 C 1.40728 * 119.95219 * 359.71325 * 17 16 15 19 19 C 1.41044 * 120.30783 * 180.27503 * 18 17 16 20 20 H 1.08004 * 120.00464 * 205.58852 * 19 18 17 21 21 C 1.39930 * 119.99839 * 25.59430 * 19 18 17 22 22 N 1.30875 * 119.99958 * 14.27193 * 21 19 18 23 23 Si 1.86800 * 119.99854 * 194.27585 * 21 19 18 24 24 H 1.48502 * 109.47131 * 59.99877 * 23 21 19 25 25 H 1.48497 * 109.47049 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47383 * 299.99781 * 23 21 19 27 27 H 1.07992 * 120.07313 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.92561 * 180.02562 * 5 4 3 29 29 H 1.08006 * 119.84648 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.92972 * 179.72406 * 7 6 5 31 31 H 0.96999 * 120.00283 * 112.23749 * 12 9 8 32 32 H 1.08003 * 119.98738 * 0.02562 * 14 13 12 33 33 H 1.08001 * 119.68149 * 179.97438 * 15 14 13 34 34 H 1.08000 * 119.70002 * 179.97438 * 16 15 14 35 35 H 1.08006 * 120.02323 * 179.97438 * 17 16 15 36 36 H 0.97000 * 119.99989 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2701 -1.1990 -0.1355 5 6 4.6492 -1.1911 -0.1341 6 6 5.3373 0.0018 0.0016 7 6 4.6483 1.1938 0.1363 8 6 3.2687 1.2005 0.1365 9 16 2.3929 2.7198 0.3088 10 8 1.4401 2.5185 1.3436 11 8 3.3744 3.7467 0.3450 12 7 1.5285 2.9480 -1.0850 13 6 2.1900 3.1992 -2.2784 14 6 3.4524 2.6693 -2.5038 15 6 4.1064 2.9236 -3.6940 16 6 3.5122 3.7076 -4.6745 17 6 2.2717 4.2414 -4.4797 18 6 1.5809 3.9938 -3.2789 19 6 0.2958 4.5371 -3.0719 20 1 -0.0607 4.7134 -2.0678 21 6 -0.5172 4.8477 -4.1676 22 7 -0.2181 4.3874 -5.3557 23 14 -2.0294 5.9193 -3.9345 24 1 -1.6199 7.2447 -3.4045 25 1 -2.7154 6.0979 -5.2394 26 1 -2.9553 5.2668 -2.9744 27 1 2.7342 -2.1308 -0.2403 28 1 5.1935 -2.1180 -0.2393 29 1 6.4174 0.0024 0.0016 30 1 5.1916 2.1208 0.2463 31 1 0.5595 2.9061 -1.0672 32 1 3.9239 2.0579 -1.7486 33 1 5.0890 2.5087 -3.8635 34 1 4.0371 3.8971 -5.5992 35 1 1.8185 4.8501 -5.2482 36 1 -0.7815 4.6030 -6.1153 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193354924.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:12 Heat of formation + Delta-G solvation = -6.968235 kcal Electronic energy + Delta-G solvation = -25331.918879 eV Core-core repulsion = 21679.443103 eV Total energy + Delta-G solvation = -3652.475776 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.61883 -39.85948 -38.58953 -37.63234 -37.16395 -35.84134 -35.44356 -32.71101 -32.52037 -31.46424 -29.79850 -27.07906 -25.33367 -24.33993 -23.21173 -22.55580 -20.87818 -20.19048 -19.30000 -18.70518 -18.47460 -18.10657 -17.08666 -16.80121 -16.24519 -16.10306 -15.96324 -15.46098 -15.35605 -15.15757 -14.56404 -14.43821 -14.37372 -14.17398 -13.99415 -13.58822 -13.54391 -13.35677 -13.30864 -13.27636 -13.14840 -13.00926 -12.71056 -12.52766 -12.20787 -12.04939 -11.77729 -11.55220 -11.25310 -11.08595 -10.41263 -10.09865 -9.35816 -8.93364 -8.57439 -6.32396 -0.90681 -0.64348 -0.01466 0.95266 1.05534 1.29169 1.34702 1.43912 1.50186 1.74005 1.79469 2.17492 2.37526 2.53660 2.67441 2.74077 3.15751 3.69789 3.74830 3.99868 4.19562 4.26501 4.27889 4.36327 4.42683 4.60961 4.75891 4.91962 5.00006 5.12077 5.15222 5.25963 5.26270 5.28256 5.60035 5.70807 5.71993 6.05652 6.12421 6.16529 6.21288 6.31901 6.69045 6.89435 7.01299 8.31620 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014807 B = 0.004986 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.500109 B = 5614.432058 C = 6280.036154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.230 3.770 3 C 0.047 3.953 4 C -0.079 4.079 5 C -0.047 4.047 6 C -0.093 4.093 7 C -0.034 4.034 8 C -0.643 4.643 9 S 2.681 3.319 10 O -0.984 6.984 11 O -0.966 6.966 12 N -1.033 6.033 13 C 0.031 3.969 14 C -0.149 4.149 15 C -0.197 4.197 16 C -0.124 4.124 17 C -0.165 4.165 18 C 0.067 3.933 19 C -0.495 4.495 20 H 0.070 0.930 21 C 0.039 3.961 22 N -0.821 5.821 23 Si 0.971 3.029 24 H -0.262 1.262 25 H -0.264 1.264 26 H -0.266 1.266 27 H 0.169 0.831 28 H 0.193 0.807 29 H 0.186 0.814 30 H 0.159 0.841 31 H 0.415 0.585 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.650 -11.838 6.398 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.086 4.086 3 C 0.042 3.958 4 C -0.101 4.101 5 C -0.065 4.065 6 C -0.112 4.112 7 C -0.053 4.053 8 C -0.736 4.736 9 S 2.775 3.225 10 O -0.974 6.974 11 O -0.957 6.957 12 N -0.783 5.783 13 C -0.064 4.064 14 C -0.170 4.170 15 C -0.217 4.217 16 C -0.143 4.143 17 C -0.185 4.185 18 C 0.061 3.939 19 C -0.525 4.525 20 H 0.088 0.912 21 C -0.176 4.176 22 N -0.447 5.447 23 Si 0.792 3.208 24 H -0.186 1.186 25 H -0.188 1.188 26 H -0.191 1.191 27 H 0.186 0.814 28 H 0.210 0.790 29 H 0.203 0.797 30 H 0.176 0.824 31 H 0.251 0.749 32 H 0.147 0.853 33 H 0.154 0.846 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.939 -11.260 6.936 17.162 hybrid contribution -1.274 0.323 -0.390 1.371 sum 9.665 -10.936 6.545 15.996 Atomic orbital electron populations 1.81223 1.12978 1.06304 1.08342 1.26296 0.93572 0.94786 0.93914 1.15581 0.82670 0.95194 1.02340 1.21760 0.95982 0.95918 0.96401 1.22040 0.92498 1.00677 0.91247 1.22075 1.03104 0.90637 0.95368 1.21298 0.89887 1.02327 0.91801 1.30560 1.07834 1.16747 1.18500 1.01914 0.73418 0.75298 0.71853 1.93573 1.62253 1.87278 1.54344 1.93553 1.61204 1.54895 1.86011 1.52508 1.18458 1.85011 1.22286 1.17500 0.95849 1.04071 0.89026 1.21006 0.94357 1.01849 0.99747 1.20602 1.01170 1.05858 0.94073 1.20783 0.95326 0.99160 0.99013 1.21051 0.94897 1.03788 0.98778 1.17749 0.93664 0.90138 0.92309 1.19520 0.99935 1.38932 0.94100 0.91235 1.26570 1.01835 0.95013 0.94163 1.69842 1.38132 1.35556 1.01183 0.85417 0.77348 0.79172 0.78832 1.18643 1.18773 1.19109 0.81365 0.78952 0.79653 0.82377 0.74891 0.85307 0.84645 0.86509 0.87352 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -15.80 18.54 19.00 0.35 -15.45 16 2 C 0.23 7.70 13.17 88.33 1.16 8.86 16 3 C 0.05 1.23 5.73 -21.36 -0.12 1.11 16 4 C -0.08 -1.23 9.76 22.54 0.22 -1.01 16 5 C -0.05 -0.42 10.03 22.23 0.22 -0.19 16 6 C -0.09 -1.03 10.04 22.33 0.22 -0.80 16 7 C -0.03 -0.70 7.76 22.23 0.17 -0.53 16 8 C -0.64 -18.48 4.25 22.54 0.10 -18.39 16 9 S 2.68 103.68 4.65 -56.49 -0.26 103.42 16 10 O -0.98 -41.65 16.89 -128.00 -2.16 -43.81 16 11 O -0.97 -40.36 16.31 -128.00 -2.09 -42.44 16 12 N -1.03 -45.38 5.20 -50.39 -0.26 -45.64 16 13 C 0.03 1.49 6.26 38.99 0.24 1.74 16 14 C -0.15 -6.10 8.89 22.37 0.20 -5.90 16 15 C -0.20 -7.76 10.03 22.41 0.22 -7.54 16 16 C -0.12 -5.39 9.96 22.01 0.22 -5.17 16 17 C -0.16 -8.43 8.63 22.46 0.19 -8.24 16 18 C 0.07 3.56 5.59 -21.17 -0.12 3.44 16 19 C -0.49 -26.80 8.41 23.37 0.20 -26.60 16 20 H 0.07 3.70 7.22 -2.91 -0.02 3.68 16 21 C 0.04 2.00 5.21 85.25 0.44 2.44 16 22 N -0.82 -42.52 10.82 21.83 0.24 -42.29 16 23 Si 0.97 39.57 29.58 68.60 2.03 41.60 16 24 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 25 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 26 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 27 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 28 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 29 H 0.19 0.50 8.06 -2.91 -0.02 0.48 16 30 H 0.16 3.16 7.34 -2.91 -0.02 3.14 16 31 H 0.41 18.68 7.88 -96.75 -0.76 17.92 16 32 H 0.13 4.33 3.56 -2.91 -0.01 4.32 16 33 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 34 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 35 H 0.11 5.80 6.10 -2.91 -0.02 5.78 16 36 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 Total: -1.00 -74.38 327.71 1.82 -72.56 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.40 Total: 28.83 kcal Atomic # 6 Polarization: -60.36 SS G_CDS: 3.58 Total: -56.78 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: 0.33 Total: -103.37 kcal Atomic # 8 Polarization: -82.00 SS G_CDS: -4.25 Total: -86.25 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Atomic # 16 Polarization: 103.68 SS G_CDS: -0.26 Total: 103.42 kcal Total: -74.38 1.82 -72.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193354924.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.589 kcal (2) G-P(sol) polarization free energy of solvation -74.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds