Wall clock time and date at job start Tue Mar 31 2020 15:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39656 * 120.14847 * 206.15213 * 3 2 1 5 5 C 1.37923 * 119.84493 * 179.97438 * 4 3 2 6 6 C 1.38388 * 120.15299 * 359.74161 * 5 4 3 7 7 C 1.38332 * 120.30273 * 0.51138 * 6 5 4 8 8 S 1.76208 * 119.92238 * 179.76508 * 7 6 5 9 9 O 1.42101 * 106.39930 * 156.18851 * 8 7 6 10 10 O 1.42097 * 106.40271 * 23.26635 * 8 7 6 11 11 N 1.65604 * 107.21783 * 269.72684 * 8 7 6 12 12 C 1.38732 * 119.99931 * 59.94620 * 11 8 7 13 13 C 1.38750 * 120.29346 * 35.64970 * 12 11 8 14 14 C 1.38163 * 120.02112 * 180.27540 * 13 12 11 15 15 C 1.38908 * 120.62998 * 359.49093 * 14 13 12 16 16 C 1.36440 * 120.59433 * 0.51911 * 15 14 13 17 17 C 1.40729 * 119.95244 * 359.73995 * 16 15 14 18 18 C 1.41041 * 120.31029 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00365 * 214.57727 * 18 17 16 20 20 C 1.39928 * 119.99960 * 34.57131 * 18 17 16 21 21 N 1.30876 * 119.99866 * 356.09706 * 20 18 17 22 22 Si 1.86804 * 120.00111 * 176.10118 * 20 18 17 23 23 H 1.48498 * 109.47433 * 89.99975 * 22 20 18 24 24 H 1.48509 * 109.46919 * 209.99924 * 22 20 18 25 25 H 1.48499 * 109.46835 * 329.99722 * 22 20 18 26 26 C 1.37965 * 120.15275 * 359.49216 * 7 6 5 27 27 H 1.08000 * 120.07856 * 359.95414 * 4 3 2 28 28 H 1.08007 * 119.92283 * 180.02562 * 5 4 3 29 29 H 1.08003 * 119.84446 * 180.28215 * 6 5 4 30 30 H 0.96999 * 119.99737 * 239.94480 * 11 8 7 31 31 H 1.07991 * 119.99097 * 0.02562 * 13 12 11 32 32 H 1.08003 * 119.68382 * 179.74796 * 14 13 12 33 33 H 1.07999 * 119.70214 * 180.28187 * 15 14 13 34 34 H 1.08002 * 120.02607 * 179.76667 * 16 15 14 35 35 H 0.97003 * 120.00336 * 180.02562 * 21 20 18 36 36 H 1.08009 * 120.07872 * 180.22814 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 1.0850 0.5323 5 6 4.6481 1.0788 0.5295 6 6 5.3374 -0.0009 0.0058 7 6 4.6494 -1.0759 -0.5277 8 16 5.5372 -2.4427 -1.1975 9 8 4.6597 -3.5588 -1.1385 10 8 6.8188 -2.4283 -0.5838 11 7 5.7846 -2.1267 -2.8042 12 6 6.4969 -0.9997 -3.1878 13 6 7.5699 -0.5575 -2.4273 14 6 8.2719 0.5688 -2.8114 15 6 7.9214 1.2628 -3.9626 16 6 6.8707 0.8505 -4.7292 17 6 6.1352 -0.2905 -4.3581 18 6 5.0480 -0.7236 -5.1453 19 1 4.1845 -1.1701 -4.6747 20 6 5.0881 -0.5748 -6.5360 21 7 6.0995 0.0349 -7.1000 22 14 3.6979 -1.2463 -7.5877 23 1 2.6551 -0.2024 -7.7551 24 1 4.2278 -1.6346 -8.9196 25 1 3.1057 -2.4358 -6.9246 26 6 3.2698 -1.0829 -0.5315 27 1 2.7322 1.9265 0.9448 28 1 5.1915 1.9165 0.9412 29 1 6.4174 -0.0025 0.0104 30 1 5.4314 -2.7295 -3.4770 31 1 7.8539 -1.0915 -1.5326 32 1 9.1036 0.9106 -2.2132 33 1 8.4833 2.1387 -4.2514 34 1 6.6039 1.3991 -5.6204 35 1 6.1272 0.1385 -8.0641 36 1 2.7339 -1.9245 -0.9450 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193355804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:16 Heat of formation + Delta-G solvation = 5.673325 kcal Electronic energy + Delta-G solvation = -24999.687576 eV Core-core repulsion = 21347.759979 eV Total energy + Delta-G solvation = -3651.927597 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.52843 -38.22519 -36.93406 -36.52221 -35.61602 -34.10325 -33.69901 -31.67102 -31.45781 -29.72642 -28.11674 -25.28805 -24.19030 -23.38958 -21.45519 -20.86422 -20.03565 -18.53136 -17.63065 -16.94703 -16.74822 -16.56525 -15.99990 -15.80792 -15.15259 -14.66662 -14.40585 -14.21025 -14.16909 -13.50548 -13.31156 -12.96457 -12.89834 -12.75649 -12.58726 -12.40732 -12.30184 -11.90119 -11.81215 -11.67753 -11.61845 -11.28898 -11.21678 -11.04391 -10.78550 -10.56061 -10.13988 -9.84906 -9.57863 -9.43326 -9.30733 -9.15927 -7.51713 -7.19591 -6.76557 -4.55944 0.42862 0.66724 0.88084 2.51466 2.63512 2.67328 2.80092 3.01173 3.02103 3.10880 3.32634 3.57945 3.68595 3.84043 3.99295 4.50582 4.54042 4.65996 4.75997 4.96039 5.24643 5.37315 5.40304 5.60777 5.83889 5.94349 6.02955 6.03341 6.20397 6.36409 6.51416 6.65358 6.89161 6.99495 7.10964 7.32251 7.32958 7.50115 7.79856 7.91713 7.97805 8.09861 8.47198 8.71538 8.78058 10.10763 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.005458 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.479385 B = 5128.609050 C = 6049.094627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.259 3.741 3 C -0.055 4.055 4 C -0.021 4.021 5 C -0.139 4.139 6 C 0.022 3.978 7 C -0.667 4.667 8 S 2.680 3.320 9 O -0.971 6.971 10 O -0.953 6.953 11 N -1.018 6.018 12 C 0.027 3.973 13 C -0.146 4.146 14 C -0.205 4.205 15 C -0.119 4.119 16 C -0.133 4.133 17 C 0.103 3.897 18 C -0.461 4.461 19 H 0.078 0.922 20 C 0.073 3.927 21 N -0.803 5.803 22 Si 0.910 3.090 23 H -0.269 1.269 24 H -0.276 1.276 25 H -0.261 1.261 26 C 0.032 3.968 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.151 0.849 30 H 0.422 0.578 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.280 0.720 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.802 2.067 9.402 9.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.056 4.056 3 C -0.059 4.059 4 C -0.042 4.042 5 C -0.158 4.158 6 C 0.002 3.998 7 C -0.752 4.752 8 S 2.771 3.229 9 O -0.961 6.961 10 O -0.943 6.943 11 N -0.770 5.770 12 C -0.070 4.070 13 C -0.167 4.167 14 C -0.225 4.225 15 C -0.138 4.138 16 C -0.154 4.154 17 C 0.098 3.902 18 C -0.492 4.492 19 H 0.096 0.904 20 C -0.143 4.143 21 N -0.430 5.430 22 Si 0.735 3.265 23 H -0.195 1.195 24 H -0.201 1.201 25 H -0.185 1.185 26 C 0.010 3.990 27 H 0.156 0.844 28 H 0.161 0.839 29 H 0.168 0.832 30 H 0.261 0.739 31 H 0.149 0.851 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.149 0.851 35 H 0.091 0.909 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.217 1.427 9.806 10.154 hybrid contribution -0.648 0.248 -1.104 1.303 sum -2.864 1.675 8.703 9.314 Atomic orbital electron populations 1.81245 1.11893 1.07427 1.08685 1.25569 0.92473 0.93907 0.93676 1.15976 0.84517 0.97965 1.07462 1.21434 0.94619 0.95551 0.92563 1.21241 0.93608 0.99337 1.01631 1.21315 1.01209 0.89846 0.87412 1.31101 1.05587 1.21379 1.17147 1.02715 0.73977 0.73171 0.72991 1.93550 1.67032 1.49206 1.86288 1.93523 1.38487 1.86203 1.76109 1.52246 1.66365 1.34121 1.24300 1.17409 0.96140 0.90385 1.03077 1.21293 0.94844 0.98993 1.01575 1.20312 1.02891 0.99537 0.99765 1.20593 0.98294 0.99304 0.95634 1.21279 0.96961 0.96760 1.00379 1.17541 0.92809 0.89399 0.90486 1.19361 1.02831 1.35957 0.91055 0.90414 1.25869 0.96199 0.93424 0.98833 1.69749 1.28250 1.32459 1.12497 0.86258 0.80948 0.80154 0.79127 1.19452 1.20143 1.18497 1.20900 0.92203 0.95860 0.90059 0.84405 0.83895 0.83177 0.73948 0.85077 0.88708 0.89160 0.85112 0.90863 0.83437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.27 18.54 41.84 0.78 -5.49 16 2 C 0.26 3.42 15.33 -22.47 -0.34 3.07 16 3 C -0.05 -0.67 5.73 -106.93 -0.61 -1.28 16 4 C -0.02 -0.21 9.76 -39.17 -0.38 -0.59 16 5 C -0.14 -1.41 10.03 -39.64 -0.40 -1.81 16 6 C 0.02 0.28 9.31 -39.49 -0.37 -0.09 16 7 C -0.67 -9.53 5.79 -39.65 -0.23 -9.76 16 8 S 2.68 43.75 5.51 -107.50 -0.59 43.16 16 9 O -0.97 -17.13 17.28 -57.17 -0.99 -18.12 16 10 O -0.95 -16.83 14.24 -57.17 -0.81 -17.64 16 11 N -1.02 -18.47 5.39 32.72 0.18 -18.29 16 12 C 0.03 0.56 6.25 -83.29 -0.52 0.04 16 13 C -0.15 -2.87 8.44 -39.42 -0.33 -3.20 16 14 C -0.20 -3.98 10.03 -39.36 -0.39 -4.38 16 15 C -0.12 -2.45 9.97 -39.98 -0.40 -2.85 16 16 C -0.13 -3.08 8.61 -39.29 -0.34 -3.42 16 17 C 0.10 2.40 5.57 -106.63 -0.59 1.81 16 18 C -0.46 -10.77 8.24 -37.89 -0.31 -11.08 16 19 H 0.08 1.72 7.65 -52.48 -0.40 1.32 16 20 C 0.07 1.69 5.42 -17.33 -0.09 1.59 16 21 N -0.80 -19.10 10.61 55.55 0.59 -18.51 16 22 Si 0.91 17.64 29.56 -169.99 -5.03 12.62 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 26 C 0.03 0.42 9.23 -39.17 -0.36 0.06 16 27 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 28 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 29 H 0.15 1.84 6.91 -52.48 -0.36 1.48 16 30 H 0.42 7.32 8.28 -34.47 -0.29 7.03 16 31 H 0.13 2.44 5.12 -52.49 -0.27 2.17 16 32 H 0.09 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.13 3.17 6.14 -52.49 -0.32 2.85 16 35 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 36 H 0.15 1.85 7.61 -52.48 -0.40 1.45 16 LS Contribution 332.37 15.07 5.01 5.01 Total: -1.00 -28.41 332.37 -9.41 -37.82 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -2.87 Total: 11.34 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: -5.68 Total: -31.89 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 1.54 Total: -42.30 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -1.80 Total: -35.76 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: 43.75 SS G_CDS: -0.59 Total: 43.16 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.41 -9.41 -37.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193355804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.496 kcal (2) G-P(sol) polarization free energy of solvation -28.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds