Wall clock time and date at job start Tue Mar 31 2020 15:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39656 * 120.14847 * 206.15213 * 3 2 1 5 5 C 1.37923 * 119.84493 * 179.97438 * 4 3 2 6 6 C 1.38388 * 120.15299 * 359.74161 * 5 4 3 7 7 C 1.38332 * 120.30273 * 0.51138 * 6 5 4 8 8 S 1.76208 * 119.92238 * 179.76508 * 7 6 5 9 9 O 1.42101 * 106.39930 * 156.18851 * 8 7 6 10 10 O 1.42097 * 106.40271 * 23.26635 * 8 7 6 11 11 N 1.65604 * 107.21783 * 269.72684 * 8 7 6 12 12 C 1.38732 * 119.99931 * 59.94620 * 11 8 7 13 13 C 1.38750 * 120.29346 * 35.64970 * 12 11 8 14 14 C 1.38163 * 120.02112 * 180.27540 * 13 12 11 15 15 C 1.38908 * 120.62998 * 359.49093 * 14 13 12 16 16 C 1.36440 * 120.59433 * 0.51911 * 15 14 13 17 17 C 1.40729 * 119.95244 * 359.73995 * 16 15 14 18 18 C 1.41041 * 120.31029 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00365 * 214.57727 * 18 17 16 20 20 C 1.39928 * 119.99960 * 34.57131 * 18 17 16 21 21 N 1.30876 * 119.99866 * 356.09706 * 20 18 17 22 22 Si 1.86804 * 120.00111 * 176.10118 * 20 18 17 23 23 H 1.48498 * 109.47433 * 89.99975 * 22 20 18 24 24 H 1.48509 * 109.46919 * 209.99924 * 22 20 18 25 25 H 1.48499 * 109.46835 * 329.99722 * 22 20 18 26 26 C 1.37965 * 120.15275 * 359.49216 * 7 6 5 27 27 H 1.08000 * 120.07856 * 359.95414 * 4 3 2 28 28 H 1.08007 * 119.92283 * 180.02562 * 5 4 3 29 29 H 1.08003 * 119.84446 * 180.28215 * 6 5 4 30 30 H 0.96999 * 119.99737 * 239.94480 * 11 8 7 31 31 H 1.07991 * 119.99097 * 0.02562 * 13 12 11 32 32 H 1.08003 * 119.68382 * 179.74796 * 14 13 12 33 33 H 1.07999 * 119.70214 * 180.28187 * 15 14 13 34 34 H 1.08002 * 120.02607 * 179.76667 * 16 15 14 35 35 H 0.97003 * 120.00336 * 180.02562 * 21 20 18 36 36 H 1.08009 * 120.07872 * 180.22814 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 1.0850 0.5323 5 6 4.6481 1.0788 0.5295 6 6 5.3374 -0.0009 0.0058 7 6 4.6494 -1.0759 -0.5277 8 16 5.5372 -2.4427 -1.1975 9 8 4.6597 -3.5588 -1.1385 10 8 6.8188 -2.4283 -0.5838 11 7 5.7846 -2.1267 -2.8042 12 6 6.4969 -0.9997 -3.1878 13 6 7.5699 -0.5575 -2.4273 14 6 8.2719 0.5688 -2.8114 15 6 7.9214 1.2628 -3.9626 16 6 6.8707 0.8505 -4.7292 17 6 6.1352 -0.2905 -4.3581 18 6 5.0480 -0.7236 -5.1453 19 1 4.1845 -1.1701 -4.6747 20 6 5.0881 -0.5748 -6.5360 21 7 6.0995 0.0349 -7.1000 22 14 3.6979 -1.2463 -7.5877 23 1 2.6551 -0.2024 -7.7551 24 1 4.2278 -1.6346 -8.9196 25 1 3.1057 -2.4358 -6.9246 26 6 3.2698 -1.0829 -0.5315 27 1 2.7322 1.9265 0.9448 28 1 5.1915 1.9165 0.9412 29 1 6.4174 -0.0025 0.0104 30 1 5.4314 -2.7295 -3.4770 31 1 7.8539 -1.0915 -1.5326 32 1 9.1036 0.9106 -2.2132 33 1 8.4833 2.1387 -4.2514 34 1 6.6039 1.3991 -5.6204 35 1 6.1272 0.1385 -8.0641 36 1 2.7339 -1.9245 -0.9450 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193355804.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:16 Heat of formation + Delta-G solvation = -10.416565 kcal Electronic energy + Delta-G solvation = -25000.385286 eV Core-core repulsion = 21347.759979 eV Total energy + Delta-G solvation = -3652.625307 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48735 -39.81469 -38.33209 -37.60935 -37.00414 -35.66515 -35.33396 -32.66156 -32.39139 -31.39311 -29.70842 -26.96854 -25.16860 -24.38282 -23.06572 -22.45839 -21.12571 -19.84411 -19.24319 -18.41780 -18.16289 -17.65659 -17.09248 -16.99451 -16.68378 -16.03696 -15.87276 -15.26920 -15.09906 -15.06742 -14.48575 -14.42538 -14.27608 -14.02268 -13.88319 -13.64216 -13.42339 -13.34062 -13.25446 -13.16224 -12.86510 -12.78849 -12.62337 -12.61889 -12.12284 -11.97299 -11.63285 -11.48365 -11.05902 -10.94923 -10.52677 -10.11793 -9.18105 -8.81992 -8.43647 -6.30184 -0.71066 -0.42941 -0.11959 1.01825 1.15315 1.41549 1.46898 1.48978 1.55105 1.67307 2.03434 2.23369 2.51501 2.66606 2.76989 2.84828 3.35637 3.70339 3.71910 3.94070 3.99522 4.29418 4.43325 4.51893 4.66474 4.71708 4.76487 4.88512 5.07290 5.11977 5.15351 5.23853 5.35784 5.45672 5.63656 5.72373 5.87061 6.19954 6.26194 6.29189 6.35281 6.42945 6.79728 7.00505 7.10380 8.44145 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.010057 B = 0.005458 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.479385 B = 5128.609050 C = 6049.094627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.279 3.721 3 C -0.061 4.061 4 C -0.004 4.004 5 C -0.129 4.129 6 C 0.009 3.991 7 C -0.679 4.679 8 S 2.700 3.300 9 O -0.986 6.986 10 O -0.967 6.967 11 N -1.027 6.027 12 C 0.037 3.963 13 C -0.152 4.152 14 C -0.193 4.193 15 C -0.124 4.124 16 C -0.156 4.156 17 C 0.072 3.928 18 C -0.486 4.486 19 H 0.078 0.922 20 C 0.035 3.965 21 N -0.836 5.836 22 Si 0.968 3.032 23 H -0.268 1.268 24 H -0.274 1.274 25 H -0.259 1.259 26 C 0.019 3.981 27 H 0.176 0.824 28 H 0.183 0.817 29 H 0.155 0.845 30 H 0.422 0.578 31 H 0.145 0.855 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.282 0.718 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.569 3.227 11.316 11.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.036 4.036 3 C -0.065 4.065 4 C -0.024 4.024 5 C -0.147 4.147 6 C -0.011 4.011 7 C -0.768 4.768 8 S 2.794 3.206 9 O -0.976 6.976 10 O -0.958 6.958 11 N -0.778 5.778 12 C -0.060 4.060 13 C -0.173 4.173 14 C -0.213 4.213 15 C -0.143 4.143 16 C -0.177 4.177 17 C 0.067 3.933 18 C -0.518 4.518 19 H 0.096 0.904 20 C -0.178 4.178 21 N -0.464 5.464 22 Si 0.791 3.209 23 H -0.193 1.193 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.003 4.003 27 H 0.193 0.807 28 H 0.200 0.800 29 H 0.172 0.828 30 H 0.260 0.740 31 H 0.163 0.837 32 H 0.146 0.854 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.951 2.563 11.696 12.131 hybrid contribution -0.660 -0.073 -1.479 1.622 sum -2.612 2.491 10.217 10.835 Atomic orbital electron populations 1.81268 1.12907 1.08606 1.10021 1.25649 0.92473 0.92847 0.92596 1.16042 0.83864 0.98491 1.08141 1.21902 0.94771 0.95381 0.90364 1.21674 0.93721 0.99254 1.00086 1.21573 1.01711 0.90174 0.87595 1.30595 1.05695 1.21341 1.19162 1.01725 0.73557 0.73293 0.72029 1.93531 1.67337 1.50505 1.86274 1.93488 1.39621 1.86704 1.75951 1.52353 1.66744 1.33493 1.25221 1.17483 0.96195 0.90214 1.02121 1.21521 0.94491 0.99385 1.01930 1.20695 1.02949 0.98562 0.99110 1.20821 0.97715 1.00102 0.95685 1.21235 0.98556 0.97279 1.00618 1.17793 0.93553 0.90197 0.91793 1.19539 1.03373 1.37139 0.91717 0.90360 1.26535 0.98010 0.93564 0.99677 1.69831 1.29808 1.34072 1.12713 0.85383 0.78413 0.79462 0.77634 1.19336 1.19884 1.18274 1.20960 0.92076 0.96629 0.90676 0.80704 0.79994 0.82770 0.74003 0.83748 0.85403 0.87085 0.87181 0.90720 0.83593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.14 18.54 19.00 0.35 -12.78 16 2 C 0.28 6.92 15.33 88.33 1.35 8.28 16 3 C -0.06 -1.34 5.73 -21.36 -0.12 -1.46 16 4 C 0.00 -0.06 9.76 22.54 0.22 0.16 16 5 C -0.13 -2.06 10.03 22.23 0.22 -1.84 16 6 C 0.01 0.21 9.31 22.33 0.21 0.42 16 7 C -0.68 -18.51 5.79 22.23 0.13 -18.38 16 8 S 2.70 86.83 5.51 -56.49 -0.31 86.52 16 9 O -0.99 -34.77 17.28 -128.00 -2.21 -36.99 16 10 O -0.97 -33.11 14.24 -128.00 -1.82 -34.93 16 11 N -1.03 -37.46 5.39 -50.39 -0.27 -37.73 16 12 C 0.04 1.52 6.25 38.99 0.24 1.76 16 13 C -0.15 -5.75 8.44 22.37 0.19 -5.56 16 14 C -0.19 -7.05 10.03 22.41 0.22 -6.82 16 15 C -0.12 -4.97 9.97 22.01 0.22 -4.75 16 16 C -0.16 -7.32 8.61 22.46 0.19 -7.13 16 17 C 0.07 3.40 5.57 -21.17 -0.12 3.28 16 18 C -0.49 -23.37 8.24 23.37 0.19 -23.17 16 19 H 0.08 3.58 7.65 -2.91 -0.02 3.56 16 20 C 0.04 1.65 5.42 85.24 0.46 2.11 16 21 N -0.84 -41.16 10.61 21.83 0.23 -40.93 16 22 Si 0.97 36.93 29.56 68.60 2.03 38.96 16 23 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 25 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 26 C 0.02 0.48 9.23 22.54 0.21 0.69 16 27 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 28 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 29 H 0.15 3.35 6.91 -2.91 -0.02 3.33 16 30 H 0.42 15.04 8.28 -96.75 -0.80 14.24 16 31 H 0.15 5.08 5.12 -2.92 -0.01 5.06 16 32 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.11 3.89 8.06 -2.91 -0.02 3.87 16 34 H 0.11 5.56 6.14 -2.91 -0.02 5.54 16 35 H 0.28 12.85 8.30 -92.71 -0.77 12.08 16 36 H 0.15 3.67 7.61 -2.91 -0.02 3.65 16 Total: -1.00 -62.19 332.37 2.18 -60.01 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.36 Total: 30.29 kcal Atomic # 6 Polarization: -56.25 SS G_CDS: 3.83 Total: -52.42 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: 0.31 Total: -91.44 kcal Atomic # 8 Polarization: -67.88 SS G_CDS: -4.03 Total: -71.92 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Atomic # 16 Polarization: 86.83 SS G_CDS: -0.31 Total: 86.52 kcal Total: -62.19 2.18 -60.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193355804.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.594 kcal (2) G-P(sol) polarization free energy of solvation -62.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds