Wall clock time and date at job start Tue Mar 31 2020 15:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31477 * 1 3 3 Si 1.86805 * 120.00235 * 2 1 4 4 H 1.48498 * 109.46816 * 240.00228 * 3 2 1 5 5 H 1.48499 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47316 * 119.99813 * 3 2 1 7 7 C 1.38755 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00552 * 179.97438 * 7 2 1 9 9 O 1.34771 * 119.99706 * 0.02562 * 7 2 1 10 10 C 1.35565 * 117.00181 * 185.08169 * 9 7 2 11 11 C 1.39162 * 119.91689 * 354.41090 * 10 9 7 12 12 C 1.37638 * 120.07873 * 179.97438 * 11 10 9 13 13 C 1.39819 * 119.91711 * 359.97438 * 12 11 10 14 14 C 1.47649 * 120.07770 * 179.97438 * 13 12 11 15 15 O 1.21775 * 119.99952 * 359.97438 * 14 13 12 16 16 C 1.46266 * 120.00202 * 179.97438 * 14 13 12 17 17 C 1.35042 * 120.00231 * 173.34030 * 16 14 13 18 18 C 1.47126 * 119.99815 * 348.94664 * 17 16 14 19 19 C 1.39918 * 120.16534 * 311.80919 * 18 17 16 20 20 C 1.37858 * 119.84553 * 179.97438 * 19 18 17 21 21 C 1.38420 * 120.19097 * 359.97438 * 20 19 18 22 22 C 1.38512 * 120.34194 * 0.05000 * 21 20 19 23 23 Cl 1.73595 * 119.92688 * 179.97438 * 22 21 20 24 24 C 1.38017 * 120.14890 * 359.94871 * 22 21 20 25 25 C 1.39823 * 119.84562 * 0.25626 * 13 12 11 26 26 C 1.37628 * 119.91840 * 359.51158 * 25 13 12 27 27 H 0.97001 * 120.00246 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.96415 * 359.97119 * 11 10 9 29 29 H 1.07996 * 120.04327 * 179.97438 * 12 11 10 30 30 H 1.07999 * 120.00011 * 353.34672 * 16 14 13 31 31 H 1.08000 * 120.00219 * 168.94486 * 17 16 14 32 32 H 1.07999 * 120.07958 * 359.70128 * 19 18 17 33 33 H 1.07998 * 119.90450 * 179.97438 * 20 19 18 34 34 H 1.07992 * 119.83054 * 179.97438 * 21 20 19 35 35 H 1.08000 * 120.09806 * 180.02562 * 24 22 21 36 36 H 1.07999 * 120.04049 * 179.74503 * 25 13 12 37 37 H 1.08006 * 119.95802 * 180.23212 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 3.1025 1.6963 -1.2125 5 1 1.2839 2.7465 -0.0006 6 1 3.1026 1.6964 1.2125 7 6 2.0086 -1.2016 0.0005 8 1 3.0885 -1.2017 0.0001 9 8 1.3347 -2.3688 0.0005 10 6 2.0688 -3.5034 0.1081 11 6 3.4587 -3.4346 0.0946 12 6 4.2073 -4.5844 0.2041 13 6 3.5696 -5.8224 0.3295 14 6 4.3692 -7.0581 0.4466 15 8 5.5855 -6.9999 0.4336 16 6 3.7004 -8.3523 0.5782 17 6 4.4239 -9.4922 0.5500 18 6 5.8385 -9.4559 0.1471 19 6 6.2219 -8.7729 -1.0123 20 6 7.5493 -8.7427 -1.3834 21 6 8.5025 -9.3852 -0.6123 22 6 8.1315 -10.0641 0.5366 23 17 9.3358 -10.8668 1.4953 24 6 6.8066 -10.1034 0.9213 25 6 2.1730 -5.8881 0.3377 26 6 1.4308 -4.7338 0.2326 27 1 -0.4850 0.8400 0.0004 28 1 3.9505 -2.4780 -0.0019 29 1 5.2858 -4.5305 0.1932 30 1 2.6280 -8.3962 0.6978 31 1 3.9642 -10.4305 0.8233 32 1 5.4793 -8.2743 -1.6174 33 1 7.8463 -8.2161 -2.2783 34 1 9.5406 -9.3582 -0.9087 35 1 6.5183 -10.6326 1.8175 36 1 1.6772 -6.8431 0.4303 37 1 0.3520 -4.7835 0.2427 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213640320.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:34 Heat of formation + Delta-G solvation = -10.025273 kcal Electronic energy + Delta-G solvation = -23237.462356 eV Core-core repulsion = 19550.517559 eV Total energy + Delta-G solvation = -3686.944797 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.065 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.25851 -40.58608 -39.55371 -37.87880 -37.37580 -34.81093 -34.41008 -32.09516 -31.73776 -31.54222 -30.16101 -27.55832 -25.81528 -23.89734 -23.57074 -23.46788 -22.00953 -20.33079 -19.58592 -19.04917 -18.05154 -17.48397 -16.73866 -16.43368 -16.37073 -16.17488 -15.72211 -15.64771 -15.42344 -15.08783 -14.66718 -14.62198 -14.51155 -14.31717 -14.09904 -13.63581 -13.56712 -13.23702 -13.01454 -12.59773 -12.56663 -12.47263 -12.41028 -12.27614 -12.16518 -11.79733 -11.28518 -10.86831 -10.81482 -10.59547 -9.92858 -9.78706 -9.16264 -9.11320 -8.55752 -6.22702 -0.52648 0.19018 0.32350 0.55994 0.86308 1.16564 1.34490 1.43694 1.49962 2.12452 2.14935 2.73657 2.85255 3.15276 3.26726 3.40744 3.68394 3.89954 3.99860 4.06331 4.10530 4.20952 4.34354 4.44228 4.46603 4.55491 4.63649 4.77194 4.90511 4.93264 5.02832 5.08522 5.17211 5.25310 5.32579 5.38653 5.44044 5.53038 5.59073 5.69576 5.85125 5.93206 6.04788 6.78928 6.88388 7.62834 8.65573 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.024437 B = 0.002191 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.524860 B =12775.056310 C =13481.632466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.014 4.014 3 Si 1.017 2.983 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.421 4.421 8 H 0.103 0.897 9 O -0.212 6.212 10 C 0.144 3.856 11 C -0.258 4.258 12 C -0.018 4.018 13 C -0.255 4.255 14 C 0.422 3.578 15 O -0.488 6.488 16 C -0.220 4.220 17 C -0.023 4.023 18 C -0.063 4.063 19 C -0.069 4.069 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.053 4.053 23 Cl -0.075 7.075 24 C -0.102 4.102 25 C -0.009 4.009 26 C -0.213 4.213 27 H 0.277 0.723 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.171 0.829 31 H 0.177 0.823 32 H 0.118 0.882 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.174 0.826 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.629 -21.398 -0.022 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.214 4.214 3 Si 0.836 3.164 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.183 1.183 7 C -0.496 4.496 8 H 0.121 0.879 9 O -0.116 6.116 10 C 0.091 3.909 11 C -0.277 4.277 12 C -0.036 4.036 13 C -0.257 4.257 14 C 0.307 3.693 15 O -0.370 6.370 16 C -0.239 4.239 17 C -0.040 4.040 18 C -0.063 4.063 19 C -0.087 4.087 20 C -0.139 4.139 21 C -0.130 4.130 22 C -0.079 4.079 23 Cl -0.046 7.046 24 C -0.121 4.121 25 C -0.027 4.027 26 C -0.232 4.232 27 H 0.086 0.914 28 H 0.140 0.860 29 H 0.144 0.856 30 H 0.188 0.812 31 H 0.195 0.805 32 H 0.136 0.864 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.191 0.809 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.917 -21.234 0.034 24.349 hybrid contribution 0.252 1.331 0.047 1.356 sum 12.169 -19.903 0.081 23.328 Atomic orbital electron populations 1.70112 1.07966 1.29343 1.47033 1.26589 0.96833 1.02682 0.95276 0.84673 0.77522 0.74281 0.79971 1.18163 1.19325 1.18269 1.21846 0.92668 0.81223 1.53873 0.87925 1.83880 1.36170 1.12736 1.78855 1.20238 0.91241 0.88249 0.91164 1.21161 0.93326 0.99767 1.13480 1.21076 0.99531 0.91217 0.91802 1.20267 0.94768 0.94458 1.16226 1.20596 0.87830 0.89398 0.71453 1.90682 1.16702 1.89505 1.40135 1.23718 1.02503 0.91487 1.06148 1.22859 0.90682 0.99671 0.90829 1.19148 0.94200 0.97619 0.95326 1.21378 0.96703 0.94762 0.95840 1.21188 0.92504 0.99500 1.00713 1.21305 1.01081 0.97070 0.93531 1.20877 0.90310 1.01317 0.95412 1.98356 1.56185 1.78604 1.71429 1.21259 0.90564 0.99917 1.00356 1.21344 0.91842 0.98011 0.91469 1.20521 1.00755 0.89913 1.11976 0.91402 0.86009 0.85625 0.81205 0.80538 0.86432 0.83825 0.83820 0.83487 0.80883 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.28 13.67 21.63 0.30 -52.99 16 2 C -0.01 -0.77 5.50 84.87 0.47 -0.30 16 3 Si 1.02 41.26 29.55 68.60 2.03 43.29 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 7 C -0.42 -23.55 9.48 67.94 0.64 -22.91 16 8 H 0.10 5.32 5.18 -2.91 -0.02 5.30 16 9 O -0.21 -12.11 9.74 -20.11 -0.20 -12.30 16 10 C 0.14 6.79 6.66 22.71 0.15 6.94 16 11 C -0.26 -11.15 9.15 22.35 0.20 -10.94 16 12 C -0.02 -0.66 9.59 22.51 0.22 -0.45 16 13 C -0.26 -8.13 5.88 -20.03 -0.12 -8.24 16 14 C 0.42 11.51 6.29 26.85 0.17 11.67 16 15 O -0.49 -15.58 12.46 -4.59 -0.06 -15.64 16 16 C -0.22 -3.95 9.39 23.62 0.22 -3.73 16 17 C -0.02 -0.34 9.79 23.87 0.23 -0.11 16 18 C -0.06 -1.27 4.34 -20.15 -0.09 -1.36 16 19 C -0.07 -1.53 6.77 22.59 0.15 -1.38 16 20 C -0.12 -2.49 10.03 22.22 0.22 -2.27 16 21 C -0.11 -2.21 9.82 22.38 0.22 -1.99 16 22 C -0.05 -1.08 6.31 22.28 0.14 -0.94 16 23 Cl -0.07 -1.39 28.95 -2.72 -0.08 -1.47 16 24 C -0.10 -2.01 9.58 22.61 0.22 -1.80 16 25 C -0.01 -0.26 9.44 22.51 0.21 -0.05 16 26 C -0.21 -8.10 9.97 22.35 0.22 -7.87 16 27 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 28 H 0.12 5.37 5.62 -2.91 -0.02 5.35 16 29 H 0.13 4.40 7.64 -2.91 -0.02 4.38 16 30 H 0.17 1.93 6.35 -2.91 -0.02 1.91 16 31 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.12 2.64 7.48 -2.91 -0.02 2.62 16 33 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 36 H 0.17 3.21 6.23 -2.91 -0.02 3.19 16 37 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -69.87 340.78 6.60 -63.27 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 1.12 Total: 21.55 kcal Atomic # 6 Polarization: -49.20 SS G_CDS: 3.49 Total: -45.71 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.30 Total: -52.99 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.25 Total: -27.94 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -69.87 6.60 -63.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213640320.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.243 kcal (2) G-P(sol) polarization free energy of solvation -69.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds