Wall clock time and date at job start Tue Mar 31 2020 15:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99907 * 2 1 4 4 C 1.53010 * 109.46683 * 179.97438 * 3 2 1 5 5 N 1.46893 * 109.47393 * 64.99712 * 4 3 2 6 6 C 1.46904 * 110.99957 * 66.04302 * 5 4 3 7 7 C 1.50703 * 109.46955 * 193.95374 * 6 5 4 8 8 H 1.07996 * 120.00413 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99582 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99715 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00179 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47452 * 90.00110 * 11 9 7 13 13 H 1.48505 * 109.47163 * 210.00254 * 11 9 7 14 14 H 1.48499 * 109.47513 * 330.00095 * 11 9 7 15 15 C 1.46903 * 111.00301 * 189.99764 * 5 4 3 16 16 C 1.50690 * 109.47301 * 169.99915 * 15 5 4 17 17 C 1.38233 * 119.60853 * 95.00118 * 16 15 5 18 18 C 1.38613 * 119.17625 * 179.97438 * 17 16 15 19 19 C 1.38752 * 118.40879 * 0.25567 * 18 17 16 20 20 Br 1.89107 * 120.42763 * 179.75035 * 19 18 17 21 21 C 1.38281 * 119.14439 * 359.51903 * 19 18 17 22 22 N 1.31858 * 119.60924 * 275.02542 * 16 15 5 23 23 H 1.09001 * 109.46729 * 60.00532 * 1 2 3 24 24 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47260 * 300.00241 * 1 2 3 26 26 H 1.08996 * 109.47241 * 59.99587 * 3 2 1 27 27 H 1.08997 * 109.47127 * 299.99097 * 3 2 1 28 28 H 1.08998 * 109.46604 * 304.99337 * 4 3 2 29 29 H 1.09005 * 109.46383 * 184.99580 * 4 3 2 30 30 H 1.09000 * 109.47188 * 313.95569 * 6 5 4 31 31 H 1.09002 * 109.47064 * 73.95536 * 6 5 4 32 32 H 0.96995 * 119.99421 * 179.97438 * 10 9 7 33 33 H 1.09001 * 109.46417 * 49.99787 * 15 5 4 34 34 H 1.08995 * 109.46546 * 290.00392 * 15 5 4 35 35 H 1.08002 * 120.41515 * 0.02562 * 17 16 15 36 36 H 1.08002 * 120.79267 * 179.97438 * 18 17 16 37 37 H 1.08007 * 119.62545 * 180.20793 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9780 0.5621 -1.2542 6 6 3.6970 1.4345 -2.4023 7 6 3.8393 0.6462 -3.6788 8 1 4.1109 -0.3983 -3.6410 9 6 3.6228 1.2588 -4.8950 10 7 3.7465 0.5707 -6.0090 11 14 3.1524 3.0653 -4.9603 12 1 4.3818 3.8944 -5.0423 13 1 2.3071 3.3138 -6.1557 14 1 2.3943 3.4241 -3.7348 15 6 5.4037 0.2131 -1.1947 16 6 5.7631 -0.6360 -2.3866 17 6 6.2927 -0.0393 -3.5155 18 6 6.6206 -0.8290 -4.6065 19 6 6.3975 -2.1959 -4.5229 20 35 6.8174 -3.3257 -5.9801 21 6 5.8687 -2.7220 -3.3585 22 7 5.5684 -1.9393 -2.3405 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6885 1.8464 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 3.8507 0.5685 0.8428 29 1 3.9785 2.1765 0.0901 30 1 2.6806 1.8206 -2.3250 31 1 4.4020 2.2658 -2.4080 32 1 3.5938 1.0016 -6.8645 33 1 5.6036 -0.3430 -0.2788 34 1 6.0014 1.1245 -1.2042 35 1 6.4497 1.0288 -3.5468 36 1 7.0355 -0.3901 -5.5019 37 1 5.6951 -3.7854 -3.2838 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228675860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:07 Heat of formation + Delta-G solvation = 17.476487 kcal Electronic energy + Delta-G solvation = -20834.227898 eV Core-core repulsion = 17659.031812 eV Total energy + Delta-G solvation = -3175.196086 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.66672 -37.84368 -36.24708 -32.69842 -32.41676 -31.33852 -29.98033 -28.89275 -27.72214 -25.95202 -24.40476 -22.76903 -22.52803 -21.07448 -19.84687 -17.16261 -16.17676 -16.08855 -15.68719 -15.62066 -14.88643 -14.53445 -14.35450 -14.29135 -13.42379 -13.23050 -13.10849 -12.60478 -12.37425 -12.21096 -11.98063 -11.63322 -11.42452 -11.34259 -11.00385 -10.78607 -10.62024 -10.55117 -10.15691 -9.92457 -9.82002 -9.42489 -9.17762 -8.88402 -8.65870 -8.51233 -7.73265 -7.41860 -6.10584 -4.02127 1.74453 2.17379 2.23911 3.18005 3.27642 3.29105 4.18734 4.30972 4.34351 4.92534 5.03652 5.19948 5.38352 5.48003 5.49302 5.59503 5.63710 5.69017 5.71326 5.82676 5.87685 5.94875 6.00089 6.10334 6.21929 6.30536 6.45915 6.68483 6.76273 6.81692 6.93138 7.38182 7.52162 7.58811 7.84512 7.92915 8.58185 8.77496 8.99232 9.47315 10.98270 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.004877 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.538290 B = 5740.283275 C = 6765.700758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.066 3.934 4 C 0.057 3.943 5 N -0.510 5.510 6 C 0.152 3.848 7 C -0.501 4.501 8 H 0.096 0.904 9 C 0.073 3.927 10 N -0.878 5.878 11 Si 0.864 3.136 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.270 1.270 15 C 0.117 3.883 16 C 0.170 3.830 17 C -0.078 4.078 18 C -0.050 4.050 19 C -0.129 4.129 20 Br -0.069 7.069 21 C 0.102 3.898 22 N -0.468 5.468 23 H 0.038 0.962 24 H 0.081 0.919 25 H 0.030 0.970 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.031 0.969 31 H -0.016 1.016 32 H 0.263 0.737 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 -1.619 6.096 7.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.285 6.285 3 C -0.011 4.011 4 C -0.071 4.071 5 N -0.235 5.235 6 C 0.026 3.974 7 C -0.538 4.538 8 H 0.114 0.886 9 C -0.131 4.131 10 N -0.515 5.515 11 Si 0.692 3.308 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.195 1.195 15 C -0.012 4.012 16 C 0.030 3.970 17 C -0.100 4.100 18 C -0.078 4.078 19 C -0.211 4.211 20 Br 0.015 6.985 21 C -0.055 4.055 22 N -0.178 5.178 23 H 0.057 0.943 24 H 0.100 0.900 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.001 0.999 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.902 -2.996 6.042 7.792 hybrid contribution -0.182 2.771 -0.863 2.909 sum 3.720 -0.225 5.179 6.381 Atomic orbital electron populations 1.22666 0.82385 1.02256 0.99125 1.88037 1.18277 1.27116 1.95106 1.22596 0.93904 0.85225 0.99344 1.22053 0.93545 0.97440 0.94068 1.61871 1.14997 1.44652 1.01970 1.20395 0.95747 0.91290 0.89948 1.21424 1.45204 0.99459 0.87758 0.88629 1.24859 0.95396 0.97073 0.95744 1.69900 1.48300 1.35897 0.97450 0.87033 0.79055 0.86875 0.77832 1.20417 1.21243 1.19465 1.20741 0.89356 0.95911 0.95148 1.20686 0.91680 0.89948 0.94715 1.21551 0.95799 1.00027 0.92574 1.21045 0.97545 0.91036 0.98143 1.22574 1.09051 0.95163 0.94299 1.96546 1.93098 1.64955 1.43897 1.22327 0.95848 0.99422 0.87919 1.67462 1.15487 1.05585 1.29240 0.94347 0.90047 0.95108 0.94062 0.92848 0.90589 0.94362 0.95101 0.99879 0.92681 0.90370 0.94320 0.85437 0.85463 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.65 10.65 -35.23 -0.38 -7.03 16 3 C 0.07 1.07 6.02 37.16 0.22 1.30 16 4 C 0.06 0.94 5.34 -3.82 -0.02 0.92 16 5 N -0.51 -10.35 4.51 -237.51 -1.07 -11.42 16 6 C 0.15 3.44 3.62 -4.97 -0.02 3.42 16 7 C -0.50 -12.96 6.32 -34.44 -0.22 -13.18 16 8 H 0.10 2.72 5.17 -52.49 -0.27 2.45 16 9 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 10 N -0.88 -24.63 13.96 55.43 0.77 -23.86 16 11 Si 0.86 20.18 27.47 -169.99 -4.67 15.51 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 15 C 0.12 2.15 5.28 -4.98 -0.03 2.13 16 16 C 0.17 3.48 4.01 -82.59 -0.33 3.15 16 17 C -0.08 -1.59 6.30 -39.44 -0.25 -1.84 16 18 C -0.05 -1.02 9.87 -39.25 -0.39 -1.41 16 19 C -0.13 -2.53 6.25 -39.38 -0.25 -2.78 16 20 Br -0.07 -1.17 33.74 -68.01 -2.29 -3.46 16 21 C 0.10 2.02 10.95 -17.52 -0.19 1.83 16 22 N -0.47 -9.87 10.16 -9.45 -0.10 -9.97 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.94 6.12 -51.93 -0.32 0.62 16 28 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 29 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 30 H 0.03 0.73 4.97 -51.93 -0.26 0.47 16 31 H -0.02 -0.36 7.41 -51.93 -0.38 -0.74 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 33 H 0.08 1.31 7.93 -51.93 -0.41 0.90 16 34 H 0.04 0.64 7.91 -51.93 -0.41 0.23 16 35 H 0.13 2.52 7.99 -52.49 -0.42 2.10 16 36 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 37 H 0.15 2.53 8.06 -52.48 -0.42 2.11 16 LS Contribution 322.21 15.07 4.86 4.86 Total: -1.00 -29.63 322.21 -8.34 -37.96 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.01 Total: 0.47 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.45 Total: -3.06 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.39 Total: -45.25 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.38 Total: -7.03 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Atomic # 35 Polarization: -1.17 SS G_CDS: -2.29 Total: -3.46 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.63 -8.34 -37.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228675860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.438 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds