Wall clock time and date at job start Tue Mar 31 2020 15:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99907 * 2 1 4 4 C 1.53010 * 109.46683 * 179.97438 * 3 2 1 5 5 N 1.46893 * 109.47393 * 64.99712 * 4 3 2 6 6 C 1.46904 * 110.99957 * 66.04302 * 5 4 3 7 7 C 1.50703 * 109.46955 * 193.95374 * 6 5 4 8 8 H 1.07996 * 120.00413 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99582 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99715 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00179 * 359.97438 * 9 7 6 12 12 H 1.48504 * 109.47452 * 90.00110 * 11 9 7 13 13 H 1.48505 * 109.47163 * 210.00254 * 11 9 7 14 14 H 1.48499 * 109.47513 * 330.00095 * 11 9 7 15 15 C 1.46903 * 111.00301 * 189.99764 * 5 4 3 16 16 C 1.50690 * 109.47301 * 169.99915 * 15 5 4 17 17 C 1.38233 * 119.60853 * 95.00118 * 16 15 5 18 18 C 1.38613 * 119.17625 * 179.97438 * 17 16 15 19 19 C 1.38752 * 118.40879 * 0.25567 * 18 17 16 20 20 Br 1.89107 * 120.42763 * 179.75035 * 19 18 17 21 21 C 1.38281 * 119.14439 * 359.51903 * 19 18 17 22 22 N 1.31858 * 119.60924 * 275.02542 * 16 15 5 23 23 H 1.09001 * 109.46729 * 60.00532 * 1 2 3 24 24 H 1.09001 * 109.46952 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47260 * 300.00241 * 1 2 3 26 26 H 1.08996 * 109.47241 * 59.99587 * 3 2 1 27 27 H 1.08997 * 109.47127 * 299.99097 * 3 2 1 28 28 H 1.08998 * 109.46604 * 304.99337 * 4 3 2 29 29 H 1.09005 * 109.46383 * 184.99580 * 4 3 2 30 30 H 1.09000 * 109.47188 * 313.95569 * 6 5 4 31 31 H 1.09002 * 109.47064 * 73.95536 * 6 5 4 32 32 H 0.96995 * 119.99421 * 179.97438 * 10 9 7 33 33 H 1.09001 * 109.46417 * 49.99787 * 15 5 4 34 34 H 1.08995 * 109.46546 * 290.00392 * 15 5 4 35 35 H 1.08002 * 120.41515 * 0.02562 * 17 16 15 36 36 H 1.08002 * 120.79267 * 179.97438 * 18 17 16 37 37 H 1.08007 * 119.62545 * 180.20793 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9780 0.5621 -1.2542 6 6 3.6970 1.4345 -2.4023 7 6 3.8393 0.6462 -3.6788 8 1 4.1109 -0.3983 -3.6410 9 6 3.6228 1.2588 -4.8950 10 7 3.7465 0.5707 -6.0090 11 14 3.1524 3.0653 -4.9603 12 1 4.3818 3.8944 -5.0423 13 1 2.3071 3.3138 -6.1557 14 1 2.3943 3.4241 -3.7348 15 6 5.4037 0.2131 -1.1947 16 6 5.7631 -0.6360 -2.3866 17 6 6.2927 -0.0393 -3.5155 18 6 6.6206 -0.8290 -4.6065 19 6 6.3975 -2.1959 -4.5229 20 35 6.8174 -3.3257 -5.9801 21 6 5.8687 -2.7220 -3.3585 22 7 5.5684 -1.9393 -2.3405 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6885 1.8464 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 3.8507 0.5685 0.8428 29 1 3.9785 2.1765 0.0901 30 1 2.6806 1.8206 -2.3250 31 1 4.4020 2.2658 -2.4080 32 1 3.5938 1.0016 -6.8645 33 1 5.6036 -0.3430 -0.2788 34 1 6.0014 1.1245 -1.2042 35 1 6.4497 1.0288 -3.5468 36 1 7.0355 -0.3901 -5.5019 37 1 5.6951 -3.7854 -3.2838 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228675860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:06 Heat of formation + Delta-G solvation = -2.662796 kcal Electronic energy + Delta-G solvation = -20835.101203 eV Core-core repulsion = 17659.031812 eV Total energy + Delta-G solvation = -3176.069390 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.21853 -39.17744 -37.67288 -34.60307 -33.92877 -32.90850 -31.38024 -30.53794 -29.28810 -27.14526 -25.91181 -24.35452 -24.16015 -22.55532 -21.38111 -19.03792 -17.64876 -17.45054 -17.17381 -17.02351 -16.36487 -16.30320 -15.72336 -15.69004 -14.99333 -14.81067 -14.64280 -14.24578 -14.00424 -13.70951 -13.49191 -13.03196 -12.82314 -12.79094 -12.51979 -12.36472 -12.13583 -12.00180 -11.71755 -11.63076 -11.28193 -11.22390 -10.75212 -10.42795 -10.23569 -10.21471 -9.33205 -8.90566 -8.10408 -6.05141 0.19173 0.59332 0.72751 1.34262 1.39803 1.45215 2.40588 2.80168 3.03446 3.21178 3.46961 3.56541 3.96650 4.05372 4.17023 4.28007 4.32713 4.47170 4.49006 4.57493 4.59492 4.67412 4.70778 4.81799 4.88133 4.89592 4.95507 5.00207 5.10500 5.24312 5.35270 5.67655 5.83948 6.10582 6.38365 6.44893 6.76706 6.95369 7.20923 7.47807 9.00238 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.013896 B = 0.004877 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.538290 B = 5740.283275 C = 6765.700758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.402 6.402 3 C 0.065 3.935 4 C 0.055 3.945 5 N -0.533 5.533 6 C 0.162 3.838 7 C -0.496 4.496 8 H 0.066 0.934 9 C 0.028 3.972 10 N -0.919 5.919 11 Si 0.917 3.083 12 H -0.268 1.268 13 H -0.296 1.296 14 H -0.259 1.259 15 C 0.117 3.883 16 C 0.162 3.838 17 C -0.088 4.088 18 C -0.057 4.057 19 C -0.141 4.141 20 Br -0.045 7.045 21 C 0.097 3.903 22 N -0.486 5.486 23 H 0.030 0.970 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.034 0.966 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.024 0.976 31 H -0.008 1.008 32 H 0.259 0.741 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 -0.736 7.704 8.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.321 6.321 3 C -0.012 4.012 4 C -0.072 4.072 5 N -0.258 5.258 6 C 0.035 3.965 7 C -0.534 4.534 8 H 0.084 0.916 9 C -0.172 4.172 10 N -0.559 5.559 11 Si 0.744 3.256 12 H -0.194 1.194 13 H -0.222 1.222 14 H -0.183 1.183 15 C -0.011 4.011 16 C 0.022 3.978 17 C -0.109 4.109 18 C -0.085 4.085 19 C -0.223 4.223 20 Br 0.040 6.960 21 C -0.060 4.060 22 N -0.196 5.196 23 H 0.049 0.951 24 H 0.107 0.893 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.010 0.990 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.889 -2.105 7.686 8.868 hybrid contribution -0.153 2.358 -1.340 2.717 sum 3.736 0.253 6.346 7.368 Atomic orbital electron populations 1.22821 0.80722 1.03159 1.00099 1.87980 1.20315 1.28429 1.95337 1.22692 0.93770 0.84713 1.00042 1.22203 0.93812 0.98727 0.92472 1.61741 1.16194 1.45000 1.02863 1.20158 0.95430 0.91265 0.89638 1.21525 1.44184 0.98409 0.89275 0.91647 1.25443 0.95721 1.00536 0.95467 1.70038 1.50616 1.37426 0.97817 0.86171 0.78997 0.82811 0.77648 1.19366 1.22229 1.18282 1.20843 0.88839 0.96582 0.94882 1.21063 0.91195 0.90066 0.95469 1.21649 0.96221 1.00188 0.92871 1.21211 0.97398 0.91636 0.98223 1.22732 1.08894 0.95423 0.95240 1.96544 1.92897 1.63976 1.42623 1.22719 0.95169 1.00355 0.87791 1.67500 1.16006 1.06126 1.29979 0.95128 0.89329 0.92270 0.90501 0.94826 0.89103 0.92012 0.95853 0.99048 0.93153 0.88763 0.92293 0.85236 0.85352 0.81637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -13.91 10.65 -148.98 -1.59 -15.49 16 3 C 0.06 1.93 6.02 71.99 0.43 2.37 16 4 C 0.06 1.66 5.34 86.31 0.46 2.12 16 5 N -0.53 -20.69 4.51 -905.36 -4.08 -24.77 16 6 C 0.16 7.10 3.62 85.56 0.31 7.41 16 7 C -0.50 -25.63 6.32 25.60 0.16 -25.46 16 8 H 0.07 3.77 5.17 -2.91 -0.02 3.76 16 9 C 0.03 1.46 5.47 84.65 0.46 1.92 16 10 N -0.92 -52.43 13.96 21.45 0.30 -52.13 16 11 Si 0.92 41.26 27.47 68.60 1.88 43.14 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 14 H -0.26 -11.04 6.54 99.48 0.65 -10.39 16 15 C 0.12 4.08 5.28 85.55 0.45 4.54 16 16 C 0.16 6.54 4.01 42.55 0.17 6.71 16 17 C -0.09 -3.59 6.30 22.36 0.14 -3.44 16 18 C -0.06 -2.34 9.87 22.48 0.22 -2.12 16 19 C -0.14 -5.51 6.25 22.40 0.14 -5.37 16 20 Br -0.04 -1.48 33.74 -20.37 -0.69 -2.17 16 21 C 0.10 3.81 10.95 84.70 0.93 4.74 16 22 N -0.49 -20.34 10.16 -183.81 -1.87 -22.21 16 23 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.03 1.13 6.12 -2.39 -0.01 1.12 16 28 H 0.09 2.44 7.93 -2.39 -0.02 2.42 16 29 H 0.06 1.57 8.12 -2.38 -0.02 1.55 16 30 H 0.02 1.07 4.97 -2.39 -0.01 1.06 16 31 H -0.01 -0.34 7.41 -2.39 -0.02 -0.35 16 32 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.09 2.96 7.93 -2.39 -0.02 2.94 16 34 H 0.06 1.81 7.91 -2.39 -0.02 1.79 16 35 H 0.13 5.10 7.99 -2.91 -0.02 5.07 16 36 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 37 H 0.17 5.63 8.06 -2.91 -0.02 5.60 16 Total: -1.00 -63.16 322.21 0.10 -63.06 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 1.01 Total: 15.18 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 5.13 Total: -4.60 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -5.65 Total: -99.11 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -1.59 Total: -15.49 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.88 Total: 43.14 kcal Atomic # 35 Polarization: -1.48 SS G_CDS: -0.69 Total: -2.17 kcal Total: -63.16 0.10 -63.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228675860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.398 kcal (2) G-P(sol) polarization free energy of solvation -63.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds