Wall clock time and date at job start Tue Mar 31 2020 14:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99825 * 270.00003 * 10 9 7 12 12 C 1.50700 * 109.46968 * 89.99854 * 11 10 9 13 13 C 1.38236 * 119.61524 * 95.00133 * 12 11 10 14 14 C 1.38631 * 119.15582 * 179.97438 * 13 12 11 15 15 C 1.38672 * 118.42320 * 0.02562 * 14 13 12 16 16 C 1.38186 * 119.16483 * 359.97438 * 15 14 13 17 17 N 1.31848 * 119.61733 * 274.72325 * 12 11 10 18 18 C 1.34776 * 120.00350 * 90.00152 * 10 9 7 19 19 O 1.21282 * 119.99887 * 180.02562 * 18 10 9 20 20 C 1.50696 * 119.99663 * 0.02562 * 18 10 9 21 21 H 1.09004 * 115.55272 * 325.57926 * 20 18 10 22 22 C 1.53000 * 117.49783 * 179.91802 * 20 18 10 23 23 C 1.52998 * 117.49953 * 111.25647 * 20 18 10 24 24 Cl 1.80300 * 117.49732 * 214.97751 * 23 20 18 25 25 Cl 1.80294 * 117.49877 * 359.97438 * 23 20 18 26 26 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 28 28 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 29 29 H 1.09002 * 109.47128 * 210.00157 * 11 10 9 30 30 H 1.08996 * 109.47091 * 329.99906 * 11 10 9 31 31 H 1.07989 * 120.41843 * 359.97438 * 13 12 11 32 32 H 1.07995 * 120.78618 * 179.97438 * 14 13 12 33 33 H 1.08001 * 120.41819 * 180.02562 * 15 14 13 34 34 H 1.08001 * 119.61744 * 179.97438 * 16 15 14 35 35 H 1.09004 * 117.49855 * 359.97438 * 22 20 18 36 36 H 1.09000 * 117.50142 * 144.99703 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.6791 -4.1705 -1.2656 12 6 3.9222 -3.4384 -1.7013 13 6 5.1651 -3.9544 -1.3850 14 6 6.3023 -3.2735 -1.7910 15 6 6.1463 -2.0935 -2.5026 16 6 4.8716 -1.6391 -2.7819 17 7 3.8118 -2.3162 -2.3845 18 6 2.6410 -4.1238 1.1703 19 8 3.4295 -5.0454 1.1710 20 6 2.1509 -3.5504 2.4749 21 1 1.9638 -2.4765 2.4756 22 6 2.6837 -4.1754 3.7658 23 6 1.2371 -4.4274 3.3331 24 17 -0.0667 -3.6055 4.2688 25 17 0.8285 -6.0676 2.7060 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6248 -2.5563 0.8920 28 1 0.6242 -2.5575 -0.8880 29 1 2.9074 -5.2282 -1.1344 30 1 1.9058 -4.0573 -2.0253 31 1 5.2490 -4.8762 -0.8287 32 1 7.2863 -3.6525 -1.5579 33 1 7.0103 -1.5372 -2.8350 34 1 4.7417 -0.7207 -3.3353 35 1 3.3884 -5.0016 3.6714 36 1 2.8469 -3.5128 4.6158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264092566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:40 Heat of formation + Delta-G solvation = 18.609542 kcal Electronic energy + Delta-G solvation = -23750.674571 eV Core-core repulsion = 20094.831374 eV Total energy + Delta-G solvation = -3655.843197 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.11356 -39.33179 -37.08848 -35.90236 -35.44708 -34.83867 -32.93977 -32.06005 -31.32057 -27.49136 -26.37438 -23.81617 -23.13538 -22.77428 -22.17651 -21.45901 -18.70828 -17.53675 -16.78579 -16.62698 -15.87179 -15.74749 -15.50833 -15.14100 -14.31626 -14.11677 -13.78821 -13.34220 -13.13119 -12.97264 -12.76065 -12.59876 -12.39157 -12.07507 -11.88279 -11.72089 -11.46147 -11.31022 -11.09475 -10.87847 -10.76723 -10.68681 -10.36609 -10.18682 -9.82304 -9.52990 -9.45008 -9.28849 -8.88473 -8.66721 -8.43616 -7.82161 -6.43089 -4.16212 1.21985 1.42145 1.66934 2.26081 2.68557 3.38908 3.40556 3.54595 3.58335 3.62867 4.27739 4.38486 4.46466 4.56723 4.70992 5.02769 5.08731 5.15602 5.29648 5.36533 5.46837 5.52360 5.56507 5.79044 5.84315 6.03106 6.04707 6.10882 6.42353 6.47632 6.50633 6.82847 7.05123 7.23851 7.90146 7.99021 8.40784 8.49778 8.66589 8.75396 9.51724 10.93797 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.005866 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.666729 B = 4771.770048 C = 6599.701054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.026 3.974 3 Si 1.066 2.934 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.595 4.595 8 H 0.053 0.947 9 C 0.229 3.771 10 N -0.573 5.573 11 C 0.172 3.828 12 C 0.122 3.878 13 C -0.156 4.156 14 C -0.087 4.087 15 C -0.181 4.181 16 C 0.097 3.903 17 N -0.439 5.439 18 C 0.550 3.450 19 O -0.554 6.554 20 C -0.142 4.142 21 H 0.159 0.841 22 C -0.118 4.118 23 C 0.020 3.980 24 Cl -0.090 7.090 25 Cl -0.088 7.088 26 H 0.268 0.732 27 H 0.028 0.972 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.134 0.866 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.150 0.850 35 H 0.129 0.871 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.209 -7.706 2.286 10.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.895 3.105 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.633 4.633 8 H 0.071 0.929 9 C 0.109 3.891 10 N -0.302 5.302 11 C 0.048 3.952 12 C -0.017 4.017 13 C -0.176 4.176 14 C -0.113 4.113 15 C -0.201 4.201 16 C -0.061 4.061 17 N -0.147 5.147 18 C 0.337 3.663 19 O -0.434 6.434 20 C -0.163 4.163 21 H 0.177 0.823 22 C -0.156 4.156 23 C -0.032 4.032 24 Cl -0.063 7.063 25 Cl -0.061 7.061 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.152 0.848 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.168 0.832 35 H 0.147 0.853 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.394 -6.281 2.083 9.202 hybrid contribution 0.898 -1.626 0.164 1.865 sum 7.292 -7.907 2.247 10.988 Atomic orbital electron populations 1.70789 1.06772 1.30507 1.46273 1.25629 0.96312 1.02262 0.93678 0.83568 0.74654 0.75395 0.76897 1.21331 1.21714 1.21053 1.22124 0.94574 0.91001 1.55649 0.92906 1.19603 0.87847 0.84095 0.97532 1.47886 1.44091 1.34773 1.03409 1.20148 0.92927 0.95916 0.86222 1.21581 0.94663 0.91878 0.93568 1.22049 0.93050 1.01851 1.00646 1.21464 0.98726 0.94800 0.96303 1.22081 0.98988 0.97723 1.01300 1.22748 0.87913 0.98697 0.96753 1.67602 1.33424 1.05110 1.08602 1.19046 0.80937 0.82054 0.84307 1.90601 1.35684 1.29770 1.87378 1.23338 0.99271 1.02003 0.91715 0.82308 1.23927 0.90870 1.03450 0.97349 1.26499 0.88039 0.86307 1.02372 1.98753 1.54689 1.78605 1.74245 1.98745 1.94667 1.25175 1.87483 0.92142 0.95418 0.95273 0.89256 0.89138 0.84824 0.85546 0.85492 0.83239 0.85283 0.85746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.60 13.65 55.43 0.76 -24.84 16 2 C 0.03 0.70 5.46 -17.82 -0.10 0.60 16 3 Si 1.07 24.46 29.90 -169.99 -5.08 19.37 16 4 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.59 -15.13 8.80 -34.44 -0.30 -15.43 16 8 H 0.05 1.42 7.75 -52.49 -0.41 1.01 16 9 C 0.23 5.27 4.16 -5.20 -0.02 5.24 16 10 N -0.57 -11.59 2.44 -176.44 -0.43 -12.02 16 11 C 0.17 3.14 5.76 -5.19 -0.03 3.11 16 12 C 0.12 2.26 6.36 -82.59 -0.53 1.74 16 13 C -0.16 -2.54 9.72 -39.44 -0.38 -2.92 16 14 C -0.09 -1.23 10.18 -39.28 -0.40 -1.63 16 15 C -0.18 -2.53 10.11 -39.44 -0.40 -2.93 16 16 C 0.10 1.60 11.18 -17.54 -0.20 1.41 16 17 N -0.44 -8.60 9.93 -9.47 -0.09 -8.69 16 18 C 0.55 10.63 6.54 -10.99 -0.07 10.55 16 19 O -0.55 -10.93 15.63 5.56 0.09 -10.85 16 20 C -0.14 -2.47 4.63 -91.77 -0.43 -2.89 16 21 H 0.16 3.05 7.00 -51.93 -0.36 2.69 16 22 C -0.12 -1.63 9.73 -26.69 -0.26 -1.89 16 23 C 0.02 0.31 3.62 -26.69 -0.10 0.21 16 24 Cl -0.09 -1.37 29.29 -51.86 -1.52 -2.89 16 25 Cl -0.09 -1.38 28.19 -51.86 -1.46 -2.84 16 26 H 0.27 7.49 7.22 -40.82 -0.29 7.20 16 27 H 0.03 0.66 6.51 -51.93 -0.34 0.32 16 28 H 0.03 0.71 7.76 -51.93 -0.40 0.31 16 29 H 0.09 1.49 7.32 -51.93 -0.38 1.11 16 30 H 0.09 1.61 7.89 -51.93 -0.41 1.20 16 31 H 0.13 2.10 8.01 -52.49 -0.42 1.68 16 32 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.15 2.16 8.06 -52.49 -0.42 1.73 16 35 H 0.13 1.76 7.67 -51.93 -0.40 1.36 16 36 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -29.44 346.06 -9.64 -39.07 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.90 Total: 3.30 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: -3.21 Total: -4.84 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.23 Total: -45.55 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.08 Total: 19.37 kcal Atomic # 17 Polarization: -2.75 SS G_CDS: -2.98 Total: -5.73 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.44 -9.64 -39.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264092566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.685 kcal (2) G-P(sol) polarization free energy of solvation -29.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds