Wall clock time and date at job start Tue Mar 31 2020 14:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99801 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99661 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46983 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99825 * 270.00003 * 10 9 7 12 12 C 1.50700 * 109.46968 * 89.99854 * 11 10 9 13 13 C 1.38236 * 119.61524 * 95.00133 * 12 11 10 14 14 C 1.38631 * 119.15582 * 179.97438 * 13 12 11 15 15 C 1.38672 * 118.42320 * 0.02562 * 14 13 12 16 16 C 1.38186 * 119.16483 * 359.97438 * 15 14 13 17 17 N 1.31848 * 119.61733 * 274.72325 * 12 11 10 18 18 C 1.34776 * 120.00350 * 90.00152 * 10 9 7 19 19 O 1.21282 * 119.99887 * 180.02562 * 18 10 9 20 20 C 1.50696 * 119.99663 * 0.02562 * 18 10 9 21 21 H 1.09004 * 115.55272 * 325.57926 * 20 18 10 22 22 C 1.53000 * 117.49783 * 179.91802 * 20 18 10 23 23 C 1.52998 * 117.49953 * 111.25647 * 20 18 10 24 24 Cl 1.80300 * 117.49732 * 214.97751 * 23 20 18 25 25 Cl 1.80294 * 117.49877 * 359.97438 * 23 20 18 26 26 H 0.97001 * 119.99697 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47575 * 299.99992 * 9 7 2 28 28 H 1.09000 * 109.47392 * 60.00390 * 9 7 2 29 29 H 1.09002 * 109.47128 * 210.00157 * 11 10 9 30 30 H 1.08996 * 109.47091 * 329.99906 * 11 10 9 31 31 H 1.07989 * 120.41843 * 359.97438 * 13 12 11 32 32 H 1.07995 * 120.78618 * 179.97438 * 14 13 12 33 33 H 1.08001 * 120.41819 * 180.02562 * 15 14 13 34 34 H 1.08001 * 119.61744 * 179.97438 * 16 15 14 35 35 H 1.09004 * 117.49855 * 359.97438 * 22 20 18 36 36 H 1.09000 * 117.50142 * 144.99703 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.6791 -4.1705 -1.2656 12 6 3.9222 -3.4384 -1.7013 13 6 5.1651 -3.9544 -1.3850 14 6 6.3023 -3.2735 -1.7910 15 6 6.1463 -2.0935 -2.5026 16 6 4.8716 -1.6391 -2.7819 17 7 3.8118 -2.3162 -2.3845 18 6 2.6410 -4.1238 1.1703 19 8 3.4295 -5.0454 1.1710 20 6 2.1509 -3.5504 2.4749 21 1 1.9638 -2.4765 2.4756 22 6 2.6837 -4.1754 3.7658 23 6 1.2371 -4.4274 3.3331 24 17 -0.0667 -3.6055 4.2688 25 17 0.8285 -6.0676 2.7060 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6248 -2.5563 0.8920 28 1 0.6242 -2.5575 -0.8880 29 1 2.9074 -5.2282 -1.1344 30 1 1.9058 -4.0573 -2.0253 31 1 5.2490 -4.8762 -0.8287 32 1 7.2863 -3.6525 -1.5579 33 1 7.0103 -1.5372 -2.8350 34 1 4.7417 -0.7207 -3.3353 35 1 3.3884 -5.0016 3.6714 36 1 2.8469 -3.5128 4.6158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264092566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:40 Heat of formation + Delta-G solvation = 3.497995 kcal Electronic energy + Delta-G solvation = -23751.329857 eV Core-core repulsion = 20094.831374 eV Total energy + Delta-G solvation = -3656.498483 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51354 -40.66310 -38.40353 -37.16213 -37.02242 -36.17749 -34.80970 -33.30946 -32.70697 -29.10282 -28.01520 -25.36925 -24.59222 -24.30772 -23.38071 -22.75452 -20.23097 -19.22147 -18.45275 -17.92683 -17.24313 -17.04454 -16.94898 -16.37021 -15.84595 -15.60707 -15.56051 -14.74929 -14.61141 -14.27906 -14.12312 -13.98623 -13.81266 -13.66326 -13.28982 -13.09495 -13.01291 -12.67405 -12.61467 -12.42911 -12.31886 -12.01458 -11.98041 -11.65989 -11.24919 -11.15022 -10.84670 -10.72236 -10.49442 -10.23086 -9.91892 -9.51353 -8.53716 -6.27128 -0.02801 0.18522 0.47589 1.00220 1.27634 1.52567 1.58940 1.75835 2.10796 2.31390 2.57712 2.99504 3.06737 3.23284 3.29623 3.42130 3.60529 3.85333 4.05113 4.19131 4.25577 4.30295 4.44767 4.51140 4.52298 4.67555 4.76869 4.78418 4.88862 4.91267 5.26902 5.30030 5.52804 5.86687 5.90311 6.17058 6.49863 6.63461 7.10698 7.23280 7.46915 8.82345 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.005866 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.666729 B = 4771.770048 C = 6599.701054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.018 4.018 3 Si 1.103 2.897 4 H -0.278 1.278 5 H -0.278 1.278 6 H -0.285 1.285 7 C -0.579 4.579 8 H 0.039 0.961 9 C 0.247 3.753 10 N -0.579 5.579 11 C 0.169 3.831 12 C 0.097 3.903 13 C -0.162 4.162 14 C -0.082 4.082 15 C -0.166 4.166 16 C 0.075 3.925 17 N -0.483 5.483 18 C 0.549 3.451 19 O -0.558 6.558 20 C -0.167 4.167 21 H 0.139 0.861 22 C -0.086 4.086 23 C 0.020 3.980 24 Cl -0.087 7.087 25 Cl -0.091 7.091 26 H 0.258 0.742 27 H 0.021 0.979 28 H 0.008 0.992 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.137 0.863 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.706 -7.685 2.989 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.218 4.218 3 Si 0.928 3.072 4 H -0.204 1.204 5 H -0.203 1.203 6 H -0.211 1.211 7 C -0.618 4.618 8 H 0.058 0.942 9 C 0.126 3.874 10 N -0.308 5.308 11 C 0.046 3.954 12 C -0.041 4.041 13 C -0.182 4.182 14 C -0.108 4.108 15 C -0.186 4.186 16 C -0.083 4.083 17 N -0.192 5.192 18 C 0.337 3.663 19 O -0.439 6.439 20 C -0.189 4.189 21 H 0.156 0.844 22 C -0.124 4.124 23 C -0.032 4.032 24 Cl -0.060 7.060 25 Cl -0.064 7.064 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.026 0.974 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.155 0.845 32 H 0.182 0.818 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.155 0.845 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.906 -6.290 2.785 11.253 hybrid contribution 0.177 -1.689 -0.095 1.701 sum 9.083 -7.980 2.689 12.386 Atomic orbital electron populations 1.70892 1.07607 1.29925 1.48730 1.26744 0.96365 1.05332 0.93341 0.83074 0.74216 0.72537 0.77414 1.20437 1.20303 1.21054 1.22166 0.93770 0.91897 1.53920 0.94243 1.19174 0.87837 0.84411 0.96017 1.47838 1.44034 1.34257 1.04669 1.20233 0.93243 0.96579 0.85336 1.21538 0.95258 0.92350 0.94956 1.22146 0.93104 1.02188 1.00803 1.21919 0.99572 0.94333 0.94991 1.22468 0.99115 0.97451 0.99579 1.23151 0.88631 0.99226 0.97270 1.67497 1.35501 1.06180 1.10031 1.19304 0.80621 0.81831 0.84547 1.90582 1.35796 1.29953 1.87539 1.23200 1.02271 1.01119 0.92350 0.84356 1.24124 0.89330 1.03079 0.95867 1.26547 0.89035 0.85716 1.01921 1.98755 1.54737 1.78606 1.73881 1.98746 1.94753 1.25174 1.87684 0.93234 0.96071 0.97384 0.88055 0.89925 0.84539 0.81818 0.81527 0.81972 0.84480 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.78 13.65 21.45 0.29 -53.48 16 2 C -0.02 -0.99 5.46 84.65 0.46 -0.53 16 3 Si 1.10 49.06 29.90 68.60 2.05 51.11 16 4 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.58 -29.95 8.80 25.60 0.23 -29.73 16 8 H 0.04 2.14 7.75 -2.91 -0.02 2.11 16 9 C 0.25 11.74 4.16 85.63 0.36 12.10 16 10 N -0.58 -23.90 2.44 -830.51 -2.03 -25.92 16 11 C 0.17 6.35 5.76 85.63 0.49 6.85 16 12 C 0.10 3.61 6.36 42.56 0.27 3.88 16 13 C -0.16 -5.07 9.72 22.36 0.22 -4.85 16 14 C -0.08 -2.07 10.18 22.47 0.23 -1.84 16 15 C -0.17 -4.14 10.11 22.36 0.23 -3.91 16 16 C 0.07 2.38 11.18 84.67 0.95 3.33 16 17 N -0.48 -19.02 9.93 -183.87 -1.83 -20.85 16 18 C 0.55 21.13 6.54 87.66 0.57 21.71 16 19 O -0.56 -21.53 15.63 -3.03 -0.05 -21.57 16 20 C -0.17 -5.75 4.63 -11.54 -0.05 -5.81 16 21 H 0.14 5.37 7.00 -2.39 -0.02 5.35 16 22 C -0.09 -2.21 9.73 30.62 0.30 -1.91 16 23 C 0.02 0.60 3.62 30.62 0.11 0.71 16 24 Cl -0.09 -2.56 29.29 -2.72 -0.08 -2.64 16 25 Cl -0.09 -2.78 28.19 -2.72 -0.08 -2.86 16 26 H 0.26 14.93 7.22 -92.71 -0.67 14.26 16 27 H 0.02 1.05 6.51 -2.39 -0.02 1.03 16 28 H 0.01 0.42 7.76 -2.39 -0.02 0.40 16 29 H 0.10 3.44 7.32 -2.39 -0.02 3.43 16 30 H 0.08 3.12 7.89 -2.39 -0.02 3.10 16 31 H 0.14 4.10 8.01 -2.92 -0.02 4.08 16 32 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 33 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 34 H 0.16 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.14 3.36 7.67 -2.38 -0.02 3.34 16 36 H 0.16 3.00 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -63.98 346.06 3.85 -60.12 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 1.21 Total: 16.11 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 4.36 Total: -0.01 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -3.56 Total: -100.25 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.05 Total: -21.57 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.05 Total: 51.11 kcal Atomic # 17 Polarization: -5.34 SS G_CDS: -0.16 Total: -5.50 kcal Total: -63.98 3.85 -60.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264092566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.621 kcal (2) G-P(sol) polarization free energy of solvation -63.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds