Wall clock time and date at job start Tue Mar 31 2020 14:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39607 * 120.12856 * 294.69427 * 3 2 1 5 5 C 1.38188 * 119.87038 * 179.97438 * 4 3 2 6 6 F 1.35100 * 119.93389 * 179.97438 * 5 4 3 7 7 C 1.38537 * 120.12770 * 359.97438 * 5 4 3 8 8 S 1.76206 * 119.87174 * 179.97438 * 7 5 4 9 9 O 1.42106 * 106.39875 * 336.45812 * 8 7 5 10 10 O 1.42101 * 106.40131 * 203.53777 * 8 7 5 11 11 N 1.65598 * 107.22062 * 89.99506 * 8 7 5 12 12 C 1.36939 * 120.00238 * 262.72692 * 11 8 7 13 13 H 1.08002 * 120.00057 * 129.15173 * 12 11 8 14 14 C 1.38812 * 119.99791 * 309.14928 * 12 11 8 15 15 N 1.31619 * 119.99981 * 153.19446 * 14 12 11 16 16 Si 1.86802 * 120.00135 * 333.19945 * 14 12 11 17 17 H 1.48498 * 109.47297 * 94.69681 * 16 14 12 18 18 H 1.48500 * 109.47161 * 214.70465 * 16 14 12 19 19 H 1.48503 * 109.46691 * 334.70320 * 16 14 12 20 20 C 1.46499 * 119.99919 * 82.71969 * 11 8 7 21 21 C 1.52996 * 117.51860 * 168.93668 * 20 11 8 22 22 C 1.52996 * 60.00007 * 107.48468 * 21 20 11 23 23 C 1.38536 * 120.25938 * 0.27195 * 7 5 4 24 24 F 1.35096 * 119.93983 * 179.74799 * 23 7 5 25 25 C 1.38196 * 120.12189 * 359.49301 * 23 7 5 26 26 H 1.07995 * 120.06226 * 359.97438 * 4 3 2 27 27 H 0.97003 * 120.00010 * 180.02562 * 15 14 12 28 28 H 1.09006 * 115.54887 * 23.23212 * 20 11 8 29 29 H 1.09008 * 117.49700 * 214.96790 * 21 20 11 30 30 H 1.08991 * 117.50384 * 359.97438 * 21 20 11 31 31 H 1.09002 * 117.49765 * 252.50868 * 22 21 20 32 32 H 1.09004 * 117.51902 * 107.48348 * 22 21 20 33 33 H 1.07997 * 120.06050 * 180.25454 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -0.5035 1.0970 5 6 4.6508 -0.5008 1.0912 6 9 5.3305 -0.9878 2.1523 7 6 5.3406 0.0005 -0.0008 8 16 7.1026 0.0013 -0.0008 9 8 7.5039 -0.0247 1.3622 10 8 7.5034 1.0174 -0.9098 11 7 7.5935 -1.4362 -0.6602 12 6 7.9402 -2.4806 0.1549 13 1 7.5056 -3.4565 -0.0035 14 6 8.8502 -2.2848 1.1847 15 7 8.8083 -3.0506 2.2543 16 14 10.1341 -0.9345 1.0524 17 1 9.6355 0.2906 1.7276 18 1 11.3917 -1.3816 1.7034 19 1 10.3958 -0.6388 -0.3792 20 6 7.6568 -1.5908 -2.1157 21 6 8.3566 -2.8356 -2.6646 22 6 6.8333 -2.7173 -2.7430 23 6 4.6504 0.5067 -1.0901 24 9 5.3295 0.9985 -2.1493 25 6 3.2684 0.5047 -1.0974 26 1 2.7323 -0.8948 1.9486 27 1 9.4440 -2.9135 2.9741 28 1 7.7579 -0.6653 -2.6828 29 1 8.9181 -2.7292 -3.5929 30 1 8.7705 -3.5398 -1.9430 31 1 6.2446 -3.3437 -2.0728 32 1 6.3922 -2.5329 -3.7227 33 1 2.7314 0.8958 -1.9489 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268135419.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:51 Heat of formation + Delta-G solvation = -65.259166 kcal Electronic energy + Delta-G solvation = -26691.199099 eV Core-core repulsion = 22481.966108 eV Total energy + Delta-G solvation = -4209.232991 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.048 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.26206 -50.15293 -40.31091 -38.95889 -37.92033 -37.63576 -36.55545 -35.24189 -33.12492 -32.75599 -31.72090 -26.83348 -26.06271 -24.20942 -23.00538 -22.25553 -21.10891 -20.77914 -19.85943 -18.72473 -18.26476 -17.82788 -17.64251 -17.30434 -17.06612 -16.90422 -16.44267 -16.19447 -15.84048 -15.53091 -15.25922 -15.11839 -14.95199 -14.90320 -14.68378 -14.01695 -13.61903 -13.59908 -13.42116 -13.29224 -13.23106 -13.02053 -12.82072 -12.67953 -12.31347 -12.18498 -12.11544 -11.82928 -11.45670 -11.02694 -10.76415 -10.63149 -10.03182 -9.53204 -8.73889 -6.29258 -1.11128 -0.36122 -0.29026 1.24981 1.29075 1.30158 1.38243 1.45498 2.15673 2.16050 2.28629 2.37558 2.75826 2.86205 2.97111 3.10050 3.21189 3.22707 3.62134 3.92067 4.08268 4.17285 4.24218 4.30307 4.36071 4.42117 4.62250 4.65433 4.76118 4.99327 5.21213 5.33979 5.40480 5.58634 5.81084 6.04299 6.11682 6.81043 7.06008 8.30795 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.016079 B = 0.006109 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.026117 B = 4581.982482 C = 5119.990704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.283 3.717 3 C 0.078 3.922 4 C -0.125 4.125 5 C 0.202 3.798 6 F -0.113 7.113 7 C -0.735 4.735 8 S 2.494 3.506 9 O -0.975 6.975 10 O -1.004 7.004 11 N -0.798 5.798 12 C -0.249 4.249 13 H 0.094 0.906 14 C 0.083 3.917 15 N -0.816 5.816 16 Si 0.849 3.151 17 H -0.264 1.264 18 H -0.258 1.258 19 H -0.246 1.246 20 C 0.044 3.956 21 C -0.154 4.154 22 C -0.178 4.178 23 C 0.203 3.797 24 F -0.110 7.110 25 C -0.118 4.118 26 H 0.185 0.815 27 H 0.290 0.710 28 H 0.129 0.871 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.366 1.565 -7.754 11.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.033 4.033 3 C 0.074 3.926 4 C -0.146 4.146 5 C 0.181 3.819 6 F -0.091 7.091 7 C -0.817 4.817 8 S 2.599 3.401 9 O -0.963 6.963 10 O -0.994 6.994 11 N -0.619 5.619 12 C -0.400 4.400 13 H 0.111 0.889 14 C -0.135 4.135 15 N -0.451 5.451 16 Si 0.672 3.328 17 H -0.189 1.189 18 H -0.183 1.183 19 H -0.170 1.170 20 C -0.063 4.063 21 C -0.193 4.193 22 C -0.217 4.217 23 C 0.182 3.818 24 F -0.088 7.088 25 C -0.139 4.139 26 H 0.202 0.798 27 H 0.101 0.899 28 H 0.146 0.854 29 H 0.138 0.862 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.140 0.860 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -9.688 2.501 -7.318 12.397 hybrid contribution 0.978 0.474 0.682 1.283 sum -8.710 2.975 -6.636 11.347 Atomic orbital electron populations 1.81332 1.12095 1.07947 1.07582 1.24869 0.91420 0.93553 0.93429 1.15251 0.84456 0.98764 0.94112 1.21419 0.90728 1.01636 1.00830 1.16743 0.90184 0.92430 0.82500 1.91724 1.80143 1.84061 1.53147 1.31928 1.33523 1.14925 1.01355 1.12343 0.75492 0.77781 0.74481 1.93461 1.80638 1.86425 1.35812 1.93367 1.81837 1.59875 1.64284 1.52706 1.67673 1.31364 1.10200 1.18733 1.20080 0.90731 1.10418 0.88857 1.26030 0.97207 0.96250 0.94034 1.69834 1.33229 1.37907 1.04148 0.87198 0.81393 0.83138 0.81053 1.18942 1.18326 1.16959 1.21857 1.09022 0.95701 0.79698 1.23272 0.95331 0.98155 1.02577 1.23373 0.94261 1.01523 1.02581 1.16571 0.90075 0.92679 0.82450 1.91652 1.80119 1.84130 1.52888 1.21424 0.90648 1.01352 1.00522 0.79758 0.89923 0.85380 0.86173 0.88518 0.89323 0.85967 0.78803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -9.58 18.54 19.00 0.35 -9.23 16 2 C 0.28 5.53 15.33 88.33 1.35 6.89 16 3 C 0.08 1.58 5.73 -21.37 -0.12 1.46 16 4 C -0.12 -2.98 9.73 22.59 0.22 -2.76 16 5 C 0.20 7.00 7.19 22.33 0.16 7.16 16 6 F -0.11 -4.73 15.32 44.97 0.69 -4.04 16 7 C -0.74 -27.66 5.99 22.41 0.13 -27.53 16 8 S 2.49 117.86 4.36 -56.49 -0.25 117.61 16 9 O -0.97 -52.42 10.72 -128.00 -1.37 -53.79 16 10 O -1.00 -49.35 15.12 -128.00 -1.94 -51.29 16 11 N -0.80 -35.45 2.50 -322.94 -0.81 -36.26 16 12 C -0.25 -11.99 7.92 84.03 0.67 -11.33 16 13 H 0.09 4.52 8.02 -2.91 -0.02 4.50 16 14 C 0.08 4.32 4.41 84.86 0.37 4.69 16 15 N -0.82 -43.18 13.97 21.65 0.30 -42.88 16 16 Si 0.85 42.10 25.48 68.60 1.75 43.85 16 17 H -0.26 -14.27 6.15 99.48 0.61 -13.66 16 18 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.25 -11.77 7.11 99.48 0.71 -11.06 16 20 C 0.04 1.60 6.43 44.99 0.29 1.89 16 21 C -0.15 -4.64 9.85 30.59 0.30 -4.34 16 22 C -0.18 -5.00 10.23 30.59 0.31 -4.69 16 23 C 0.20 6.19 7.20 22.33 0.16 6.35 16 24 F -0.11 -3.58 15.31 44.97 0.69 -2.89 16 25 C -0.12 -2.46 9.73 22.59 0.22 -2.24 16 26 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16 27 H 0.29 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.13 4.50 7.45 -2.38 -0.02 4.48 16 29 H 0.12 2.83 8.14 -2.38 -0.02 2.81 16 30 H 0.10 3.26 7.11 -2.39 -0.02 3.24 16 31 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.19 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -64.17 312.85 4.58 -59.59 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: 1.09 Total: 3.78 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 4.07 Total: -24.44 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -0.15 Total: -88.37 kcal Atomic # 8 Polarization: -101.77 SS G_CDS: -3.31 Total: -105.08 kcal Atomic # 9 Polarization: -8.31 SS G_CDS: 1.38 Total: -6.94 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.75 Total: 43.85 kcal Atomic # 16 Polarization: 117.86 SS G_CDS: -0.25 Total: 117.61 kcal Total: -64.17 4.58 -59.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268135419.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.667 kcal (2) G-P(sol) polarization free energy of solvation -64.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds