Wall clock time and date at job start Tue Mar 31 2020 14:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86802 * 119.99841 * 2 1 4 4 H 1.48498 * 109.47158 * 239.99972 * 3 2 1 5 5 H 1.48502 * 109.47199 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47275 * 119.99833 * 3 2 1 7 7 C 1.40048 * 120.00644 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00465 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99743 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00218 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00018 * 180.02562 * 9 7 2 12 12 C 1.46505 * 120.00107 * 180.02562 * 11 9 7 13 13 H 1.09001 * 110.87223 * 37.39119 * 12 11 9 14 14 C 1.55138 * 110.99061 * 273.54341 * 12 11 9 15 15 C 1.54315 * 103.01777 * 206.25341 * 14 12 11 16 16 N 1.47443 * 107.23737 * 22.28507 * 15 14 12 17 17 C 1.39742 * 110.99965 * 123.25275 * 16 15 14 18 18 C 1.38918 * 120.05163 * 36.27558 * 17 16 15 19 19 C 1.38106 * 119.96118 * 179.97438 * 18 17 16 20 20 C 1.38385 * 120.07138 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 119.94000 * 180.02562 * 20 19 18 22 22 C 1.38471 * 120.11167 * 0.02562 * 20 19 18 23 23 Cl 1.73599 * 119.98350 * 179.97438 * 22 20 19 24 24 C 1.38240 * 120.03787 * 359.97438 * 22 20 19 25 25 C 1.47848 * 108.56375 * 0.98712 * 16 15 14 26 26 H 0.96990 * 120.00340 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00310 * 0.02562 * 11 9 7 28 28 H 1.08997 * 110.70107 * 87.87280 * 14 12 11 29 29 H 1.09001 * 110.70733 * 324.63923 * 14 12 11 30 30 H 1.09000 * 109.88976 * 262.87904 * 15 14 12 31 31 H 1.09007 * 110.02222 * 141.76822 * 15 14 12 32 32 H 1.07994 * 120.02432 * 359.97438 * 18 17 16 33 33 H 1.07993 * 119.96415 * 180.27451 * 19 18 17 34 34 H 1.07998 * 120.03896 * 179.97438 * 24 22 20 35 35 H 1.09004 * 110.37123 * 94.72937 * 25 16 15 36 36 H 1.08993 * 110.37415 * 217.07075 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0071 -1.2128 0.0005 8 1 3.0871 -1.2127 0.0010 9 6 1.2753 -2.4805 0.0017 10 8 0.0584 -2.4806 0.0017 11 7 1.9492 -3.6476 0.0027 12 6 1.2168 -4.9164 0.0033 13 1 0.3221 -4.8486 -0.6156 14 6 0.8609 -5.3520 1.4491 15 6 0.7527 -6.8869 1.3330 16 7 1.5274 -7.2910 0.1454 17 6 2.5131 -8.2221 0.4834 18 6 2.2611 -9.1788 1.4586 19 6 3.2364 -10.0985 1.7908 20 6 4.4641 -10.0682 1.1530 21 17 5.6873 -11.2263 1.5728 22 6 4.7185 -9.1159 0.1805 23 17 6.2600 -9.0805 -0.6170 24 6 3.7455 -8.1931 -0.1556 25 6 2.1258 -6.0821 -0.4599 26 1 -0.4850 0.8399 0.0004 27 1 2.9192 -3.6476 0.0031 28 1 -0.0913 -4.9208 1.7580 29 1 1.6545 -5.0728 2.1421 30 1 -0.2910 -7.1770 1.2112 31 1 1.1669 -7.3587 2.2241 32 1 1.3032 -9.2036 1.9566 33 1 3.0390 -10.8451 2.5457 34 1 3.9440 -7.4501 -0.9138 35 1 3.1427 -5.9384 -0.0945 36 1 2.1196 -6.1593 -1.5471 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274846580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:55 Heat of formation + Delta-G solvation = -15.515509 kcal Electronic energy + Delta-G solvation = -22501.275881 eV Core-core repulsion = 18843.952911 eV Total energy + Delta-G solvation = -3657.322970 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75145 -38.52694 -37.14436 -36.72261 -36.29548 -33.50527 -32.40886 -31.68854 -30.86368 -28.78511 -27.96837 -26.00829 -23.29657 -23.11331 -20.92142 -20.82918 -19.57910 -18.07243 -17.38952 -16.29082 -16.16369 -15.83990 -15.39812 -15.29154 -14.34773 -14.31133 -14.11144 -13.90773 -13.61682 -13.30202 -12.79177 -12.58167 -12.42852 -12.21561 -12.08746 -11.93871 -11.59720 -11.30684 -11.19127 -11.18156 -11.12056 -11.03801 -10.86797 -10.53131 -10.43879 -10.29534 -9.81505 -9.17820 -8.91092 -8.05585 -7.73034 -7.65432 -6.25701 -4.71947 0.73614 0.84780 1.63650 2.00609 3.09117 3.11838 3.17247 3.18779 3.64257 4.05921 4.32169 4.47254 4.56477 4.62807 4.73201 4.86100 4.93320 5.11604 5.17655 5.31249 5.35584 5.47899 5.54673 5.61410 5.74175 5.75174 5.78272 5.93342 6.01936 6.13518 6.41567 6.51709 6.68100 6.92696 7.36784 7.80036 7.97222 8.23715 8.95531 9.41234 10.51787 10.69675 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.020730 B = 0.002591 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.375959 B =10802.127281 C =11704.160049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.578 6.578 11 N -0.758 5.758 12 C 0.155 3.845 13 H 0.093 0.907 14 C -0.153 4.153 15 C 0.038 3.962 16 N -0.471 5.471 17 C 0.142 3.858 18 C -0.146 4.146 19 C -0.068 4.068 20 C -0.070 4.070 21 Cl -0.060 7.060 22 C 0.003 3.997 23 Cl -0.051 7.051 24 C -0.150 4.150 25 C 0.029 3.971 26 H 0.270 0.730 27 H 0.381 0.619 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.067 0.933 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.445 -19.716 2.980 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.460 6.460 11 N -0.413 5.413 12 C 0.047 3.953 13 H 0.111 0.889 14 C -0.193 4.193 15 C -0.087 4.087 16 N -0.182 5.182 17 C 0.040 3.960 18 C -0.168 4.168 19 C -0.087 4.087 20 C -0.099 4.099 21 Cl -0.031 7.031 22 C -0.025 4.025 23 Cl -0.022 7.022 24 C -0.172 4.172 25 C -0.098 4.098 26 H 0.080 0.920 27 H 0.213 0.787 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.085 0.915 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.179 -19.835 2.553 21.248 hybrid contribution 1.602 0.901 0.390 1.879 sum 8.782 -18.933 2.943 21.077 Atomic orbital electron populations 1.69994 1.07055 1.27503 1.34989 1.25698 0.94630 1.00310 0.92574 0.86427 0.79829 0.80984 0.79488 1.19244 1.20529 1.19272 1.20837 0.93577 0.89322 1.54487 0.91449 1.18214 0.87228 0.82250 0.76251 1.90605 1.14006 1.86625 1.54777 1.46111 1.08401 1.04244 1.82498 1.21518 0.95382 0.83916 0.94510 0.88927 1.23241 1.03665 0.92872 0.99489 1.23163 0.99085 0.96652 0.89794 1.60421 1.20128 1.11784 1.25887 1.19192 0.89035 0.94997 0.92752 1.20959 1.00571 0.96299 0.98924 1.20839 0.90520 0.98583 0.98790 1.20579 0.92534 0.95787 1.00972 1.98369 1.54212 1.57889 1.92658 1.20539 0.88933 0.96941 0.96106 1.98392 1.27250 1.97949 1.78598 1.20899 0.91361 1.00738 1.04206 1.23586 0.97763 0.87671 1.00740 0.91966 0.78744 0.89633 0.91116 0.89422 0.91176 0.84023 0.84026 0.83502 0.91481 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.42 11.83 55.55 0.66 -21.76 16 2 C 0.09 2.39 5.50 -17.37 -0.10 2.29 16 3 Si 0.91 19.65 29.56 -169.99 -5.02 14.62 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 7 C -0.55 -14.85 9.54 -35.63 -0.34 -15.19 16 8 H 0.07 1.68 7.85 -52.49 -0.41 1.26 16 9 C 0.56 15.01 7.75 -12.99 -0.10 14.91 16 10 O -0.58 -17.84 14.76 5.20 0.08 -17.77 16 11 N -0.76 -15.63 5.23 -53.14 -0.28 -15.91 16 12 C 0.15 2.69 3.31 -65.79 -0.22 2.47 16 13 H 0.09 1.86 7.73 -51.93 -0.40 1.46 16 14 C -0.15 -2.36 6.64 -24.91 -0.17 -2.53 16 15 C 0.04 0.46 6.18 -2.84 -0.02 0.44 16 16 N -0.47 -5.80 5.28 -167.91 -0.89 -6.69 16 17 C 0.14 1.60 5.78 -83.77 -0.48 1.12 16 18 C -0.15 -1.41 8.59 -39.38 -0.34 -1.75 16 19 C -0.07 -0.62 9.82 -39.58 -0.39 -1.00 16 20 C -0.07 -0.73 6.32 -39.44 -0.25 -0.98 16 21 Cl -0.06 -0.59 27.95 -51.86 -1.45 -2.04 16 22 C 0.00 0.03 6.32 -39.49 -0.25 -0.22 16 23 Cl -0.05 -0.55 27.95 -51.86 -1.45 -2.00 16 24 C -0.15 -1.68 8.44 -39.35 -0.33 -2.02 16 25 C 0.03 0.38 5.09 -2.30 -0.01 0.37 16 26 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 27 H 0.38 6.89 8.49 -40.82 -0.35 6.54 16 28 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.71 5.93 -51.93 -0.31 0.41 16 32 H 0.14 1.12 6.76 -52.49 -0.36 0.77 16 33 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 34 H 0.15 1.57 6.41 -52.49 -0.34 1.23 16 35 H 0.07 0.84 6.36 -51.93 -0.33 0.51 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 331.60 15.07 5.00 5.00 Total: -1.00 -31.98 331.60 -10.08 -42.07 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -3.74 Total: 6.56 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -2.99 Total: -2.08 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.51 Total: -44.36 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.08 Total: -17.77 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -2.90 Total: -4.04 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.98 -10.08 -42.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274846580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.551 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds