Wall clock time and date at job start Tue Mar 31 2020 14:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86802 * 119.99841 * 2 1 4 4 H 1.48498 * 109.47158 * 239.99972 * 3 2 1 5 5 H 1.48502 * 109.47199 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47275 * 119.99833 * 3 2 1 7 7 C 1.40048 * 120.00644 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00465 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99743 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00218 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00018 * 180.02562 * 9 7 2 12 12 C 1.46505 * 120.00107 * 180.02562 * 11 9 7 13 13 H 1.09001 * 110.87223 * 37.39119 * 12 11 9 14 14 C 1.55138 * 110.99061 * 273.54341 * 12 11 9 15 15 C 1.54315 * 103.01777 * 206.25341 * 14 12 11 16 16 N 1.47443 * 107.23737 * 22.28507 * 15 14 12 17 17 C 1.39742 * 110.99965 * 123.25275 * 16 15 14 18 18 C 1.38918 * 120.05163 * 36.27558 * 17 16 15 19 19 C 1.38106 * 119.96118 * 179.97438 * 18 17 16 20 20 C 1.38385 * 120.07138 * 359.97438 * 19 18 17 21 21 Cl 1.73596 * 119.94000 * 180.02562 * 20 19 18 22 22 C 1.38471 * 120.11167 * 0.02562 * 20 19 18 23 23 Cl 1.73599 * 119.98350 * 179.97438 * 22 20 19 24 24 C 1.38240 * 120.03787 * 359.97438 * 22 20 19 25 25 C 1.47848 * 108.56375 * 0.98712 * 16 15 14 26 26 H 0.96990 * 120.00340 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00310 * 0.02562 * 11 9 7 28 28 H 1.08997 * 110.70107 * 87.87280 * 14 12 11 29 29 H 1.09001 * 110.70733 * 324.63923 * 14 12 11 30 30 H 1.09000 * 109.88976 * 262.87904 * 15 14 12 31 31 H 1.09007 * 110.02222 * 141.76822 * 15 14 12 32 32 H 1.07994 * 120.02432 * 359.97438 * 18 17 16 33 33 H 1.07993 * 119.96415 * 180.27451 * 19 18 17 34 34 H 1.07998 * 120.03896 * 179.97438 * 24 22 20 35 35 H 1.09004 * 110.37123 * 94.72937 * 25 16 15 36 36 H 1.08993 * 110.37415 * 217.07075 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6965 1.2125 7 6 2.0071 -1.2128 0.0005 8 1 3.0871 -1.2127 0.0010 9 6 1.2753 -2.4805 0.0017 10 8 0.0584 -2.4806 0.0017 11 7 1.9492 -3.6476 0.0027 12 6 1.2168 -4.9164 0.0033 13 1 0.3221 -4.8486 -0.6156 14 6 0.8609 -5.3520 1.4491 15 6 0.7527 -6.8869 1.3330 16 7 1.5274 -7.2910 0.1454 17 6 2.5131 -8.2221 0.4834 18 6 2.2611 -9.1788 1.4586 19 6 3.2364 -10.0985 1.7908 20 6 4.4641 -10.0682 1.1530 21 17 5.6873 -11.2263 1.5728 22 6 4.7185 -9.1159 0.1805 23 17 6.2600 -9.0805 -0.6170 24 6 3.7455 -8.1931 -0.1556 25 6 2.1258 -6.0821 -0.4599 26 1 -0.4850 0.8399 0.0004 27 1 2.9192 -3.6476 0.0031 28 1 -0.0913 -4.9208 1.7580 29 1 1.6545 -5.0728 2.1421 30 1 -0.2910 -7.1770 1.2112 31 1 1.1669 -7.3587 2.2241 32 1 1.3032 -9.2036 1.9566 33 1 3.0390 -10.8451 2.5457 34 1 3.9440 -7.4501 -0.9138 35 1 3.1427 -5.9384 -0.0945 36 1 2.1196 -6.1593 -1.5471 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274846580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:55 Heat of formation + Delta-G solvation = -36.745499 kcal Electronic energy + Delta-G solvation = -22502.196483 eV Core-core repulsion = 18843.952911 eV Total energy + Delta-G solvation = -3658.243571 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.71145 -39.76198 -38.68686 -37.52721 -37.28476 -35.12119 -34.40600 -32.64896 -32.03493 -29.86889 -29.26014 -27.82559 -24.23658 -24.12112 -22.40153 -21.86768 -21.16161 -19.28692 -18.94651 -17.64010 -17.19280 -17.03387 -16.80881 -16.35611 -15.85237 -15.52817 -15.10759 -15.04047 -14.79155 -14.49747 -14.39369 -14.12115 -13.58668 -13.36780 -13.17228 -12.88714 -12.84763 -12.76927 -12.62693 -12.52137 -12.35916 -12.18153 -12.04954 -12.03228 -11.86491 -11.71476 -10.91937 -10.69723 -9.96921 -9.87674 -9.50390 -8.92732 -8.29348 -6.85784 -0.07360 0.06675 0.83537 1.21840 1.40769 1.43449 1.55104 2.20215 2.28199 2.46827 2.66173 3.17741 3.43551 3.50472 3.62644 3.79033 3.99394 4.07072 4.09635 4.16673 4.22426 4.31707 4.45150 4.62603 4.69454 4.76265 4.82578 4.92843 5.02479 5.11525 5.14982 5.32020 5.35319 5.69199 5.87248 6.02061 6.20953 6.26630 6.87113 7.52691 8.49103 8.67102 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.020730 B = 0.002591 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.375959 B =10802.127281 C =11704.160049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 0.995 3.005 4 H -0.255 1.255 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.543 3.457 10 O -0.628 6.628 11 N -0.745 5.745 12 C 0.145 3.855 13 H 0.059 0.941 14 C -0.148 4.148 15 C 0.049 3.951 16 N -0.473 5.473 17 C 0.126 3.874 18 C -0.140 4.140 19 C -0.062 4.062 20 C -0.076 4.076 21 Cl -0.057 7.057 22 C -0.009 4.009 23 Cl -0.054 7.054 24 C -0.156 4.156 25 C 0.045 3.955 26 H 0.274 0.726 27 H 0.395 0.605 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.148 0.852 35 H 0.080 0.920 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.165 -20.756 3.790 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.185 4.185 3 Si 0.814 3.186 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.611 4.611 8 H 0.105 0.895 9 C 0.347 3.653 10 O -0.514 6.514 11 N -0.399 5.399 12 C 0.038 3.962 13 H 0.077 0.923 14 C -0.188 4.188 15 C -0.076 4.076 16 N -0.185 5.185 17 C 0.025 3.975 18 C -0.161 4.161 19 C -0.081 4.081 20 C -0.104 4.104 21 Cl -0.028 7.028 22 C -0.037 4.037 23 Cl -0.025 7.025 24 C -0.178 4.178 25 C -0.081 4.081 26 H 0.084 0.916 27 H 0.229 0.771 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.165 0.835 35 H 0.098 0.902 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.955 -20.942 3.366 23.023 hybrid contribution 1.098 1.094 0.152 1.557 sum 10.052 -19.847 3.518 22.524 Atomic orbital electron populations 1.70164 1.09445 1.28991 1.36426 1.26925 0.95491 1.04853 0.91250 0.85109 0.78233 0.74956 0.80253 1.17904 1.20048 1.17883 1.21403 0.94743 0.90127 1.54778 0.89485 1.18511 0.86807 0.84112 0.75855 1.90561 1.16112 1.87793 1.56982 1.45696 1.09056 1.04127 1.81007 1.21608 0.94974 0.83870 0.95762 0.92309 1.23108 1.02136 0.95798 0.97793 1.23130 1.00043 0.93585 0.90867 1.60483 1.20632 1.11272 1.26143 1.19286 0.88892 0.95413 0.93875 1.21209 1.01461 0.95385 0.97998 1.21141 0.89577 0.98671 0.98707 1.20798 0.93174 0.95613 1.00835 1.98374 1.54210 1.57660 1.92566 1.20631 0.88946 0.97456 0.96648 1.98389 1.27379 1.97981 1.78718 1.20936 0.91547 1.00957 1.04335 1.23385 0.97214 0.86347 1.01162 0.91583 0.77078 0.92268 0.91135 0.88442 0.88580 0.81936 0.81384 0.83475 0.90211 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.49 11.83 21.84 0.26 -49.23 16 2 C 0.03 1.65 5.50 85.30 0.47 2.12 16 3 Si 0.99 40.17 29.56 68.60 2.03 42.20 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.57 -31.63 9.54 24.83 0.24 -31.39 16 8 H 0.09 4.28 7.85 -2.91 -0.02 4.25 16 9 C 0.54 30.30 7.75 86.36 0.67 30.97 16 10 O -0.63 -40.76 14.76 -4.30 -0.06 -40.82 16 11 N -0.74 -31.35 5.23 -440.27 -2.30 -33.65 16 12 C 0.14 5.16 3.31 46.38 0.15 5.31 16 13 H 0.06 2.50 7.73 -2.39 -0.02 2.48 16 14 C -0.15 -4.63 6.64 31.77 0.21 -4.42 16 15 C 0.05 1.08 6.18 86.65 0.54 1.61 16 16 N -0.47 -10.85 5.28 -685.14 -3.61 -14.46 16 17 C 0.13 2.54 5.78 38.19 0.22 2.77 16 18 C -0.14 -2.21 8.59 22.40 0.19 -2.02 16 19 C -0.06 -0.91 9.82 22.27 0.22 -0.69 16 20 C -0.08 -1.39 6.32 22.36 0.14 -1.25 16 21 Cl -0.06 -1.01 27.95 -2.72 -0.08 -1.08 16 22 C -0.01 -0.18 6.32 22.33 0.14 -0.03 16 23 Cl -0.05 -1.09 27.95 -2.72 -0.08 -1.16 16 24 C -0.16 -3.21 8.44 22.42 0.19 -3.02 16 25 C 0.05 1.17 5.09 86.77 0.44 1.61 16 26 H 0.27 15.04 8.29 -92.72 -0.77 14.27 16 27 H 0.40 14.22 8.49 -92.71 -0.79 13.43 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.10 1.64 5.93 -2.38 -0.01 1.63 16 32 H 0.16 1.88 6.76 -2.91 -0.02 1.86 16 33 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 34 H 0.15 2.93 6.41 -2.91 -0.02 2.91 16 35 H 0.08 1.87 6.36 -2.38 -0.02 1.85 16 36 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -72.16 331.60 0.33 -71.83 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.35 Total: 24.83 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 3.82 Total: 1.55 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -5.66 Total: -97.34 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.06 Total: -40.82 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.15 Total: -2.24 kcal Total: -72.16 0.33 -71.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274846580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.084 kcal (2) G-P(sol) polarization free energy of solvation -72.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds