Wall clock time and date at job start Tue Mar 31 2020 14:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86792 * 120.00477 * 2 1 4 4 H 1.48507 * 109.47316 * 274.99196 * 3 2 1 5 5 H 1.48505 * 109.46844 * 34.98556 * 3 2 1 6 6 H 1.48494 * 109.47473 * 154.98656 * 3 2 1 7 7 C 1.40060 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99752 * 186.14838 * 7 2 1 9 9 C 1.46373 * 120.00239 * 6.14447 * 7 2 1 10 10 O 1.21695 * 119.99795 * 353.94003 * 9 7 2 11 11 N 1.34767 * 120.00036 * 173.94159 * 9 7 2 12 12 C 1.46503 * 120.00103 * 180.02562 * 11 9 7 13 13 H 1.09007 * 110.64229 * 323.29908 * 12 11 9 14 14 C 1.54593 * 110.72502 * 86.45449 * 12 11 9 15 15 C 1.53989 * 105.14032 * 140.49545 * 14 12 11 16 16 N 1.47899 * 107.06061 * 1.22224 * 15 14 12 17 17 C 1.39738 * 111.00574 * 214.15613 * 16 15 14 18 18 C 1.38923 * 120.05007 * 59.87194 * 17 16 15 19 19 C 1.38100 * 119.96015 * 180.02562 * 18 17 16 20 20 C 1.38383 * 120.07475 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 119.94385 * 180.02562 * 20 19 18 22 22 C 1.38472 * 120.11192 * 359.97438 * 20 19 18 23 23 Cl 1.73598 * 119.98299 * 179.97438 * 22 20 19 24 24 C 1.38245 * 120.03537 * 0.25341 * 22 20 19 25 25 C 1.48540 * 105.81967 * 334.67299 * 16 15 14 26 26 H 0.97001 * 120.00273 * 359.97438 * 1 2 3 27 27 H 0.97005 * 120.00111 * 0.02562 * 11 9 7 28 28 H 1.09001 * 110.31156 * 21.57716 * 14 12 11 29 29 H 1.09002 * 110.30603 * 259.41025 * 14 12 11 30 30 H 1.09001 * 109.91874 * 241.86985 * 15 14 12 31 31 H 1.09004 * 109.92272 * 120.57571 * 15 14 12 32 32 H 1.07997 * 120.02270 * 0.04778 * 18 17 16 33 33 H 1.08002 * 119.96499 * 179.97438 * 19 18 17 34 34 H 1.07994 * 120.03650 * 179.74471 * 24 22 20 35 35 H 1.09004 * 110.66618 * 157.64166 * 25 16 15 36 36 H 1.09003 * 110.66274 * 280.76989 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.3828 2.1072 -1.3948 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4119 0.5920 7 6 2.0069 -1.2130 -0.0005 8 1 3.0822 -1.2158 0.0996 9 6 1.2813 -2.4769 -0.1368 10 8 0.0644 -2.4827 -0.1387 11 7 1.9609 -3.6341 -0.2601 12 6 1.2347 -4.8991 -0.3970 13 1 0.3330 -4.8928 0.2155 14 6 0.8879 -5.1733 -1.8784 15 6 1.1069 -6.6855 -2.0696 16 7 1.5228 -7.2326 -0.7599 17 6 2.4325 -8.2810 -0.9212 18 6 3.6421 -8.0593 -1.5674 19 6 4.5396 -9.0969 -1.7262 20 6 4.2350 -10.3573 -1.2427 21 17 5.3659 -11.6590 -1.4436 22 6 3.0302 -10.5817 -0.5981 23 17 2.6513 -12.1643 0.0064 24 6 2.1265 -9.5474 -0.4408 25 6 2.1414 -6.0993 -0.0256 26 1 -0.4850 0.8400 0.0004 27 1 2.9309 -3.6295 -0.2582 28 1 1.5521 -4.6091 -2.5332 29 1 -0.1517 -4.9134 -2.0779 30 1 1.8893 -6.8569 -2.8089 31 1 0.1786 -7.1575 -2.3912 32 1 3.8807 -7.0761 -1.9451 33 1 5.4798 -8.9247 -2.2289 34 1 1.1851 -9.7234 0.0583 35 1 2.1198 -6.2797 1.0492 36 1 3.1624 -5.9306 -0.3680 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274846582.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:58 Heat of formation + Delta-G solvation = -15.377264 kcal Electronic energy + Delta-G solvation = -22351.131531 eV Core-core repulsion = 18693.814555 eV Total energy + Delta-G solvation = -3657.316975 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58521 -38.57833 -37.14896 -36.83293 -36.34458 -33.46938 -32.39511 -31.39830 -30.94300 -28.69058 -27.92894 -25.91222 -23.51443 -22.90784 -21.03016 -20.87526 -19.44994 -17.91596 -17.31023 -16.62993 -16.44321 -15.60400 -15.35138 -14.96638 -14.51571 -14.22325 -14.11333 -13.91425 -13.70708 -13.09127 -12.73098 -12.59525 -12.35261 -12.32328 -12.19217 -11.78260 -11.51866 -11.43659 -11.32853 -11.20793 -11.17607 -11.03837 -10.85512 -10.51140 -10.31331 -10.24998 -9.29551 -8.89822 -8.86153 -8.76583 -7.68816 -7.61215 -6.24688 -4.69360 0.53881 0.76149 1.51596 1.86967 3.03236 3.10391 3.17988 3.21191 3.63868 4.07591 4.30102 4.51182 4.62778 4.65678 4.80241 4.87034 4.92059 5.10574 5.20819 5.36609 5.37344 5.44349 5.62992 5.67585 5.73432 5.78022 5.94612 6.04928 6.07277 6.15843 6.44103 6.53376 6.74738 7.10145 7.38883 7.84087 8.02053 8.26936 8.97594 9.45046 10.54114 10.72315 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.029194 B = 0.002280 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.856685 B =12277.345682 C =12785.772438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.577 6.577 11 N -0.760 5.760 12 C 0.159 3.841 13 H 0.091 0.909 14 C -0.142 4.142 15 C 0.042 3.958 16 N -0.484 5.484 17 C 0.111 3.889 18 C -0.134 4.134 19 C -0.088 4.088 20 C -0.039 4.039 21 Cl -0.054 7.054 22 C -0.025 4.025 23 Cl -0.049 7.049 24 C -0.077 4.077 25 C 0.034 3.966 26 H 0.269 0.731 27 H 0.379 0.621 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.089 0.911 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.166 -20.574 -3.735 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.360 3.640 10 O -0.460 6.460 11 N -0.414 5.414 12 C 0.051 3.949 13 H 0.109 0.891 14 C -0.182 4.182 15 C -0.084 4.084 16 N -0.206 5.206 17 C 0.016 3.984 18 C -0.155 4.155 19 C -0.108 4.108 20 C -0.067 4.067 21 Cl -0.025 7.025 22 C -0.053 4.053 23 Cl -0.020 7.020 24 C -0.097 4.097 25 C -0.092 4.092 26 H 0.079 0.921 27 H 0.211 0.789 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.168 0.832 35 H 0.108 0.892 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.672 -20.914 -3.400 22.535 hybrid contribution 1.727 0.811 -0.486 1.969 sum 9.400 -20.103 -3.887 22.530 Atomic orbital electron populations 1.70017 1.07072 1.27341 1.35060 1.25701 0.94598 1.00306 0.92604 0.86368 0.80242 0.81523 0.78680 1.19818 1.20427 1.18900 1.20874 0.94082 0.89558 1.53817 0.91426 1.18220 0.87178 0.82285 0.76302 1.90610 1.14024 1.86204 1.55150 1.46168 1.08366 1.05321 1.81573 1.21299 0.95543 0.83529 0.94492 0.89074 1.22908 1.03410 0.92884 0.99006 1.23034 1.00818 0.95914 0.88632 1.62399 1.34305 1.06805 1.17090 1.19046 0.91015 0.92556 0.95788 1.21850 0.94282 0.99849 0.99486 1.20903 1.00490 0.90014 0.99355 1.20771 0.91538 0.90891 1.03468 1.98387 1.59929 1.48126 1.96044 1.20644 0.94627 0.88440 1.01558 1.98393 1.94119 1.23286 1.86198 1.20904 0.99428 0.89819 0.99512 1.23623 0.96793 0.89393 0.99427 0.92059 0.78891 0.90985 0.90391 0.93318 0.89932 0.84299 0.83984 0.83180 0.89249 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.50 11.85 55.55 0.66 -21.84 16 2 C 0.09 2.39 5.49 -17.36 -0.10 2.30 16 3 Si 0.91 19.65 29.56 -169.99 -5.03 14.63 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.55 -14.90 9.53 -35.63 -0.34 -15.24 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.56 15.09 7.74 -12.99 -0.10 14.99 16 10 O -0.58 -18.01 14.77 5.19 0.08 -17.93 16 11 N -0.76 -15.73 5.14 -53.41 -0.27 -16.00 16 12 C 0.16 2.81 3.34 -66.07 -0.22 2.59 16 13 H 0.09 1.89 7.69 -51.93 -0.40 1.49 16 14 C -0.14 -2.26 6.67 -25.38 -0.17 -2.43 16 15 C 0.04 0.52 6.51 -2.76 -0.02 0.51 16 16 N -0.48 -6.08 5.28 -167.15 -0.88 -6.96 16 17 C 0.11 1.23 4.85 -83.77 -0.41 0.82 16 18 C -0.13 -1.31 7.90 -39.38 -0.31 -1.62 16 19 C -0.09 -0.78 9.82 -39.58 -0.39 -1.17 16 20 C -0.04 -0.38 6.32 -39.44 -0.25 -0.63 16 21 Cl -0.05 -0.50 27.95 -51.86 -1.45 -1.95 16 22 C -0.02 -0.25 6.32 -39.49 -0.25 -0.50 16 23 Cl -0.05 -0.48 27.95 -51.86 -1.45 -1.93 16 24 C -0.08 -0.81 9.75 -39.35 -0.38 -1.19 16 25 C 0.03 0.46 6.02 -1.89 -0.01 0.45 16 26 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 27 H 0.38 6.83 8.52 -40.82 -0.35 6.49 16 28 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.05 0.54 6.69 -51.93 -0.35 0.20 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.14 1.25 7.05 -52.49 -0.37 0.88 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.05 0.66 6.53 -51.93 -0.34 0.32 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -31.91 335.30 -10.12 -42.02 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -3.88 Total: 6.04 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.94 Total: -1.13 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: -0.50 Total: -44.80 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.08 Total: -17.93 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.63 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -2.90 Total: -3.87 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.91 -10.12 -42.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274846582.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.647 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds