Wall clock time and date at job start Tue Mar 31 2020 14:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86792 * 120.00477 * 2 1 4 4 H 1.48507 * 109.47316 * 274.99196 * 3 2 1 5 5 H 1.48505 * 109.46844 * 34.98556 * 3 2 1 6 6 H 1.48494 * 109.47473 * 154.98656 * 3 2 1 7 7 C 1.40060 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99752 * 186.14838 * 7 2 1 9 9 C 1.46373 * 120.00239 * 6.14447 * 7 2 1 10 10 O 1.21695 * 119.99795 * 353.94003 * 9 7 2 11 11 N 1.34767 * 120.00036 * 173.94159 * 9 7 2 12 12 C 1.46503 * 120.00103 * 180.02562 * 11 9 7 13 13 H 1.09007 * 110.64229 * 323.29908 * 12 11 9 14 14 C 1.54593 * 110.72502 * 86.45449 * 12 11 9 15 15 C 1.53989 * 105.14032 * 140.49545 * 14 12 11 16 16 N 1.47899 * 107.06061 * 1.22224 * 15 14 12 17 17 C 1.39738 * 111.00574 * 214.15613 * 16 15 14 18 18 C 1.38923 * 120.05007 * 59.87194 * 17 16 15 19 19 C 1.38100 * 119.96015 * 180.02562 * 18 17 16 20 20 C 1.38383 * 120.07475 * 0.02562 * 19 18 17 21 21 Cl 1.73603 * 119.94385 * 180.02562 * 20 19 18 22 22 C 1.38472 * 120.11192 * 359.97438 * 20 19 18 23 23 Cl 1.73598 * 119.98299 * 179.97438 * 22 20 19 24 24 C 1.38245 * 120.03537 * 0.25341 * 22 20 19 25 25 C 1.48540 * 105.81967 * 334.67299 * 16 15 14 26 26 H 0.97001 * 120.00273 * 359.97438 * 1 2 3 27 27 H 0.97005 * 120.00111 * 0.02562 * 11 9 7 28 28 H 1.09001 * 110.31156 * 21.57716 * 14 12 11 29 29 H 1.09002 * 110.30603 * 259.41025 * 14 12 11 30 30 H 1.09001 * 109.91874 * 241.86985 * 15 14 12 31 31 H 1.09004 * 109.92272 * 120.57571 * 15 14 12 32 32 H 1.07997 * 120.02270 * 0.04778 * 18 17 16 33 33 H 1.08002 * 119.96499 * 179.97438 * 19 18 17 34 34 H 1.07994 * 120.03650 * 179.74471 * 24 22 20 35 35 H 1.09004 * 110.66618 * 157.64166 * 25 16 15 36 36 H 1.09003 * 110.66274 * 280.76989 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.3828 2.1072 -1.3948 5 1 1.4949 2.6199 0.8028 6 1 3.5870 1.4119 0.5920 7 6 2.0069 -1.2130 -0.0005 8 1 3.0822 -1.2158 0.0996 9 6 1.2813 -2.4769 -0.1368 10 8 0.0644 -2.4827 -0.1387 11 7 1.9609 -3.6341 -0.2601 12 6 1.2347 -4.8991 -0.3970 13 1 0.3330 -4.8928 0.2155 14 6 0.8879 -5.1733 -1.8784 15 6 1.1069 -6.6855 -2.0696 16 7 1.5228 -7.2326 -0.7599 17 6 2.4325 -8.2810 -0.9212 18 6 3.6421 -8.0593 -1.5674 19 6 4.5396 -9.0969 -1.7262 20 6 4.2350 -10.3573 -1.2427 21 17 5.3659 -11.6590 -1.4436 22 6 3.0302 -10.5817 -0.5981 23 17 2.6513 -12.1643 0.0064 24 6 2.1265 -9.5474 -0.4408 25 6 2.1414 -6.0993 -0.0256 26 1 -0.4850 0.8400 0.0004 27 1 2.9309 -3.6295 -0.2582 28 1 1.5521 -4.6091 -2.5332 29 1 -0.1517 -4.9134 -2.0779 30 1 1.8893 -6.8569 -2.8089 31 1 0.1786 -7.1575 -2.3912 32 1 3.8807 -7.0761 -1.9451 33 1 5.4798 -8.9247 -2.2289 34 1 1.1851 -9.7234 0.0583 35 1 2.1198 -6.2797 1.0492 36 1 3.1624 -5.9306 -0.3680 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274846582.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:58 Heat of formation + Delta-G solvation = -36.370763 kcal Electronic energy + Delta-G solvation = -22352.041877 eV Core-core repulsion = 18693.814555 eV Total energy + Delta-G solvation = -3658.227322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.53191 -39.80520 -38.67668 -37.57602 -37.34744 -35.09001 -34.38959 -32.44039 -31.97930 -29.82574 -29.28511 -27.73738 -24.36573 -23.79975 -22.67629 -21.89136 -21.09778 -19.22194 -18.77760 -17.62223 -17.45920 -17.32551 -16.54125 -16.17995 -15.70913 -15.45652 -15.26570 -14.90981 -14.85720 -14.54659 -14.33189 -14.07738 -13.42431 -13.36455 -13.04885 -12.93185 -12.88751 -12.83368 -12.60439 -12.55862 -12.34498 -12.27965 -12.09726 -11.98997 -11.92224 -11.63386 -10.92032 -10.04459 -9.87723 -9.70499 -9.65696 -9.46269 -8.28645 -6.83400 -0.24686 0.01753 0.76863 1.12168 1.41820 1.42247 1.58267 2.23297 2.27064 2.48871 2.59867 3.27158 3.50876 3.58978 3.60786 3.90070 3.96644 4.03548 4.05600 4.18718 4.22590 4.37688 4.50251 4.69353 4.70951 4.81549 4.89435 4.92919 5.10135 5.14567 5.25980 5.31475 5.34245 5.53074 5.90217 6.17586 6.25374 6.31134 6.88940 7.56915 8.51599 8.69238 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.029194 B = 0.002280 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.856685 B =12277.345682 C =12785.772438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.248 1.248 7 C -0.573 4.573 8 H 0.088 0.912 9 C 0.542 3.458 10 O -0.630 6.630 11 N -0.745 5.745 12 C 0.151 3.849 13 H 0.052 0.948 14 C -0.137 4.137 15 C 0.054 3.946 16 N -0.489 5.489 17 C 0.096 3.904 18 C -0.130 4.130 19 C -0.081 4.081 20 C -0.043 4.043 21 Cl -0.050 7.050 22 C -0.031 4.031 23 Cl -0.049 7.049 24 C -0.079 4.079 25 C 0.051 3.949 26 H 0.274 0.726 27 H 0.396 0.604 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.151 0.849 33 H 0.166 0.834 34 H 0.151 0.849 35 H 0.090 0.910 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.981 -21.012 -4.398 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.171 1.171 7 C -0.610 4.610 8 H 0.107 0.893 9 C 0.346 3.654 10 O -0.517 6.517 11 N -0.399 5.399 12 C 0.044 3.956 13 H 0.070 0.930 14 C -0.177 4.177 15 C -0.072 4.072 16 N -0.211 5.211 17 C 0.002 3.998 18 C -0.150 4.150 19 C -0.101 4.101 20 C -0.070 4.070 21 Cl -0.020 7.020 22 C -0.059 4.059 23 Cl -0.019 7.019 24 C -0.099 4.099 25 C -0.075 4.075 26 H 0.084 0.916 27 H 0.230 0.770 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.169 0.831 33 H 0.183 0.817 34 H 0.169 0.831 35 H 0.109 0.891 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.539 -21.416 -4.068 24.213 hybrid contribution 0.859 0.817 -0.275 1.217 sum 11.398 -20.598 -4.343 23.939 Atomic orbital electron populations 1.70188 1.09538 1.28890 1.36532 1.26951 0.95456 1.04935 0.91272 0.85032 0.78982 0.75341 0.79099 1.18861 1.20019 1.17068 1.21428 0.95238 0.90251 1.54041 0.89350 1.18548 0.86745 0.84166 0.75939 1.90568 1.16267 1.87397 1.57442 1.45739 1.09085 1.05001 1.80051 1.21355 0.95029 0.83797 0.95383 0.92974 1.22765 1.01703 0.95767 0.97435 1.22934 1.02076 0.92913 0.89272 1.62311 1.35111 1.06691 1.16981 1.19021 0.91494 0.92057 0.97270 1.21941 0.93640 1.00600 0.98865 1.21137 1.01095 0.89214 0.98611 1.20940 0.91434 0.91463 1.03203 1.98392 1.59652 1.48022 1.95978 1.20696 0.94894 0.88462 1.01896 1.98394 1.94154 1.23176 1.86219 1.20913 0.99621 0.89842 0.99495 1.23418 0.96678 0.87647 0.99803 0.91639 0.76988 0.91159 0.92993 0.91041 0.89246 0.83125 0.81670 0.83137 0.89135 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.72 11.85 21.84 0.26 -49.47 16 2 C 0.03 1.58 5.49 85.31 0.47 2.05 16 3 Si 1.00 40.02 29.56 68.60 2.03 42.05 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 7 C -0.57 -31.44 9.53 24.83 0.24 -31.20 16 8 H 0.09 4.31 7.85 -2.91 -0.02 4.29 16 9 C 0.54 30.28 7.74 86.36 0.67 30.94 16 10 O -0.63 -41.29 14.77 -4.33 -0.06 -41.35 16 11 N -0.74 -31.13 5.14 -441.11 -2.27 -33.40 16 12 C 0.15 5.46 3.34 46.20 0.15 5.61 16 13 H 0.05 2.30 7.69 -2.38 -0.02 2.28 16 14 C -0.14 -4.40 6.67 31.47 0.21 -4.19 16 15 C 0.05 1.27 6.51 86.45 0.56 1.83 16 16 N -0.49 -11.56 5.28 -682.74 -3.60 -15.16 16 17 C 0.10 1.91 4.85 38.19 0.19 2.10 16 18 C -0.13 -2.11 7.90 22.40 0.18 -1.94 16 19 C -0.08 -1.18 9.82 22.27 0.22 -0.96 16 20 C -0.04 -0.73 6.32 22.36 0.14 -0.59 16 21 Cl -0.05 -0.81 27.95 -2.72 -0.08 -0.88 16 22 C -0.03 -0.58 6.32 22.33 0.14 -0.44 16 23 Cl -0.05 -0.88 27.95 -2.72 -0.08 -0.95 16 24 C -0.08 -1.53 9.75 22.42 0.22 -1.31 16 25 C 0.05 1.32 6.02 86.65 0.52 1.84 16 26 H 0.27 15.02 8.29 -92.71 -0.77 14.25 16 27 H 0.40 13.85 8.52 -92.70 -0.79 13.07 16 28 H 0.07 2.26 8.05 -2.39 -0.02 2.25 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 1.39 6.69 -2.39 -0.02 1.37 16 31 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.15 2.11 7.05 -2.91 -0.02 2.09 16 33 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.08 1.64 6.53 -2.39 -0.02 1.62 16 Total: -1.00 -72.02 335.30 0.45 -71.57 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.34 Total: 23.84 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 3.90 Total: 3.75 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -5.61 Total: -98.03 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.06 Total: -41.35 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.15 Total: -1.84 kcal Total: -72.02 0.45 -71.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274846582.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.200 kcal (2) G-P(sol) polarization free energy of solvation -72.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds