Wall clock time and date at job start Tue Mar 31 2020 15:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30835 * 125.89219 * 2 1 4 4 N 1.40087 * 108.23650 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03099 * 180.02562 * 4 3 2 6 6 C 1.34976 * 107.92797 * 359.77245 * 4 3 2 7 7 Cl 1.73596 * 126.14165 * 180.22646 * 6 4 3 8 8 C 1.35465 * 107.71891 * 0.36771 * 6 4 3 9 9 C 1.50700 * 126.05432 * 179.89546 * 8 6 4 10 10 C 1.50697 * 109.47247 * 269.69008 * 9 8 6 11 11 N 1.29946 * 126.28965 * 269.97284 * 10 9 8 12 12 O 1.21300 * 110.25269 * 179.72305 * 11 10 9 13 13 C 1.33643 * 109.81038 * 0.47090 * 12 11 10 14 14 C 1.50698 * 126.55187 * 179.79880 * 13 12 11 15 15 S 1.80998 * 109.47116 * 269.68760 * 14 13 12 16 16 C 1.76199 * 100.00013 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00250 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00102 * 179.72368 * 16 15 14 19 19 N 1.31626 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00292 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47210 * 89.99890 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00121 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00210 * 20 18 16 24 24 N 1.31131 * 106.89729 * 359.53556 * 13 12 11 25 25 H 1.08994 * 109.47372 * 269.95720 * 1 2 3 26 26 H 1.08998 * 109.47186 * 29.95752 * 1 2 3 27 27 H 1.09000 * 109.47140 * 149.95674 * 1 2 3 28 28 H 1.08992 * 109.47219 * 90.02393 * 5 4 3 29 29 H 1.09000 * 109.46392 * 210.02609 * 5 4 3 30 30 H 1.09001 * 109.46893 * 330.01862 * 5 4 3 31 31 H 1.08993 * 109.47248 * 149.68596 * 9 8 6 32 32 H 1.09002 * 109.46889 * 29.68583 * 9 8 6 33 33 H 1.09001 * 109.47434 * 149.68522 * 14 13 12 34 34 H 1.08999 * 109.47072 * 29.69002 * 14 13 12 35 35 H 0.97004 * 120.00604 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0599 0.0000 4 7 3.6089 0.6350 -0.0006 5 6 4.7894 1.5026 -0.0003 6 6 3.6153 -0.7147 0.0041 7 17 5.0221 -1.7318 0.0111 8 6 2.3269 -1.1331 -0.0006 9 6 1.8597 -2.5659 -0.0001 10 6 1.7027 -3.0436 -1.4207 11 7 0.6266 -2.9631 -2.1448 12 8 0.8254 -3.4315 -3.2459 13 6 2.0825 -3.8778 -3.3280 14 6 2.7261 -4.5325 -4.5231 15 16 2.4858 -6.3242 -4.4316 16 6 3.3120 -6.8193 -5.9070 17 1 3.7690 -6.0774 -6.5451 18 6 3.3810 -8.1635 -6.2461 19 7 2.8289 -9.0683 -5.4657 20 14 4.2563 -8.6885 -7.8106 21 1 5.6886 -8.9453 -7.5142 22 1 3.6296 -9.9279 -8.3364 23 1 4.1465 -7.6095 -8.8250 24 7 2.6505 -3.6320 -2.1720 25 1 -0.3634 -0.0008 1.0276 26 1 -0.3633 0.8903 -0.5132 27 1 -0.3633 -0.8896 -0.5145 28 1 5.0827 1.7167 1.0274 29 1 5.6089 1.0011 -0.5151 30 1 4.5549 2.4354 -0.5131 31 1 0.9014 -2.6354 0.5146 32 1 2.5937 -3.1872 0.5131 33 1 3.7928 -4.3088 -4.5293 34 1 2.2695 -4.1508 -5.4363 35 1 2.8767 -10.0077 -5.7028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278027681.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:08 Heat of formation + Delta-G solvation = 131.981267 kcal Electronic energy + Delta-G solvation = -22261.108877 eV Core-core repulsion = 18644.518304 eV Total energy + Delta-G solvation = -3616.590572 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.050 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.14388 -41.65750 -37.07802 -35.98980 -34.58624 -33.35841 -32.55326 -31.52529 -30.00870 -28.47749 -27.76615 -25.61871 -25.29323 -23.19131 -21.75119 -20.78208 -20.03681 -17.94220 -17.78260 -17.21928 -16.77541 -16.15786 -15.18274 -14.90697 -14.68673 -14.39198 -14.26839 -14.07376 -13.69000 -13.49549 -13.06249 -12.97814 -12.85515 -12.69976 -12.52902 -12.37155 -11.91247 -11.77306 -11.68638 -11.25603 -11.14677 -11.11034 -10.92871 -10.72243 -10.59425 -10.18507 -9.40279 -9.35280 -9.17542 -8.73678 -8.51793 -6.71708 -6.34824 -4.08893 1.21553 1.32100 1.46768 2.20962 2.30707 2.57331 3.11301 3.17571 3.23491 3.26751 3.46887 3.96678 4.05448 4.09298 4.33660 4.62632 4.75971 4.82495 4.89538 5.02553 5.02794 5.11705 5.19201 5.39853 5.42197 5.54970 5.60129 5.68107 5.69381 5.87030 6.00030 6.18150 6.28712 6.37904 6.38604 7.26215 7.49411 8.23872 8.55695 9.11212 10.73136 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.002810 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.116776 B = 9961.707643 C =10710.961723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.098 3.902 3 N -0.277 5.277 4 N -0.368 5.368 5 C 0.097 3.903 6 C 0.140 3.860 7 Cl 0.012 6.988 8 C -0.214 4.214 9 C 0.052 3.948 10 C 0.174 3.826 11 N -0.390 5.390 12 O 0.074 5.926 13 C 0.225 3.775 14 C -0.042 4.042 15 S -0.081 6.081 16 C -0.526 4.526 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.867 5.867 20 Si 0.923 3.077 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.270 1.270 24 N -0.474 5.474 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.277 18.697 12.185 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.068 4.068 3 N -0.101 5.101 4 N -0.152 5.152 5 C -0.044 4.044 6 C -0.014 4.014 7 Cl 0.040 6.960 8 C -0.227 4.227 9 C 0.012 3.988 10 C -0.100 4.100 11 N -0.100 5.100 12 O 0.017 5.983 13 C 0.004 3.996 14 C -0.191 4.191 15 S 0.145 5.855 16 C -0.674 4.674 17 H 0.098 0.902 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.749 3.251 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.195 1.195 24 N -0.208 5.208 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.612 19.526 13.572 23.787 hybrid contribution 1.585 -0.652 -2.050 2.673 sum 2.197 18.873 11.521 22.221 Atomic orbital electron populations 1.20296 0.85740 1.04303 1.03346 1.22195 0.97258 0.89365 0.97935 1.77492 0.85034 1.21595 1.25965 1.48479 1.06388 1.02781 1.57544 1.21968 0.83586 0.94956 1.03872 1.21547 0.90810 0.83952 1.05092 1.98446 1.37241 1.63591 1.96707 1.19243 0.89829 0.96003 1.17644 1.18074 1.03733 0.90177 0.86775 1.25533 0.85602 0.98897 0.99920 1.74515 1.23702 1.18792 0.93033 1.85275 1.31092 1.55131 1.26767 1.28164 0.81619 0.93539 0.96267 1.21943 1.02201 1.03484 0.91435 1.85179 1.74639 0.90595 1.35078 1.22710 1.41455 0.95272 1.07956 0.90228 1.25017 0.95264 0.95325 0.97895 1.69996 1.41629 1.01708 1.36876 0.86086 0.79350 0.78264 0.81367 1.20144 1.20679 1.19471 1.71927 1.29800 1.17494 1.01627 0.89978 0.90524 0.89441 0.90183 0.89177 0.88629 0.87947 0.87839 0.87295 0.88106 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.12 36.00 0.36 -0.38 16 2 C 0.10 1.22 7.22 -82.41 -0.59 0.62 16 3 N -0.28 -3.58 12.57 33.67 0.42 -3.16 16 4 N -0.37 -4.25 4.01 -64.91 -0.26 -4.51 16 5 C 0.10 0.69 11.31 59.85 0.68 1.37 16 6 C 0.14 1.73 7.45 -17.16 -0.13 1.61 16 7 Cl 0.01 0.14 28.34 -51.86 -1.47 -1.33 16 8 C -0.21 -2.74 5.34 -105.00 -0.56 -3.30 16 9 C 0.05 0.66 5.83 -29.04 -0.17 0.49 16 10 C 0.17 2.84 7.45 -156.37 -1.17 1.68 16 11 N -0.39 -6.71 12.16 30.90 0.38 -6.34 16 12 O 0.07 1.36 11.31 18.10 0.20 1.57 16 13 C 0.22 4.21 7.77 -13.06 -0.10 4.10 16 14 C -0.04 -0.81 6.30 36.00 0.23 -0.58 16 15 S -0.08 -2.01 21.42 -107.50 -2.30 -4.31 16 16 C -0.53 -14.11 9.50 30.94 0.29 -13.82 16 17 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 18 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 19 N -0.87 -24.91 13.22 55.49 0.73 -24.17 16 20 Si 0.92 20.55 29.55 -169.99 -5.02 15.52 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 N -0.47 -8.70 11.55 -9.87 -0.11 -8.81 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 0.88 7.92 -51.93 -0.41 0.47 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.54 7.81 -51.93 -0.41 0.14 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.10 1.07 7.92 -51.93 -0.41 0.66 16 32 H 0.10 1.24 7.90 -51.93 -0.41 0.83 16 33 H 0.11 2.02 8.14 -51.92 -0.42 1.60 16 34 H 0.10 1.77 8.14 -51.92 -0.42 1.35 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 345.75 15.07 5.21 5.21 Total: -1.00 -32.13 345.75 -7.20 -39.32 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -3.72 Total: -2.70 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -1.25 Total: -6.28 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 1.16 Total: -47.00 kcal Atomic # 8 Polarization: 1.36 SS G_CDS: 0.20 Total: 1.57 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.30 Total: -4.31 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -1.47 Total: -1.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.13 -7.20 -39.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278027681.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.305 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds