Wall clock time and date at job start Tue Mar 31 2020 15:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30835 * 125.89219 * 2 1 4 4 N 1.40087 * 108.23650 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03099 * 180.02562 * 4 3 2 6 6 C 1.34976 * 107.92797 * 359.77245 * 4 3 2 7 7 Cl 1.73596 * 126.14165 * 180.22646 * 6 4 3 8 8 C 1.35465 * 107.71891 * 0.36771 * 6 4 3 9 9 C 1.50700 * 126.05432 * 179.89546 * 8 6 4 10 10 C 1.50697 * 109.47247 * 269.69008 * 9 8 6 11 11 N 1.29946 * 126.28965 * 269.97284 * 10 9 8 12 12 O 1.21300 * 110.25269 * 179.72305 * 11 10 9 13 13 C 1.33643 * 109.81038 * 0.47090 * 12 11 10 14 14 C 1.50698 * 126.55187 * 179.79880 * 13 12 11 15 15 S 1.80998 * 109.47116 * 269.68760 * 14 13 12 16 16 C 1.76199 * 100.00013 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00250 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00102 * 179.72368 * 16 15 14 19 19 N 1.31626 * 120.00155 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00292 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47210 * 89.99890 * 20 18 16 22 22 H 1.48504 * 109.47424 * 210.00121 * 20 18 16 23 23 H 1.48502 * 109.46888 * 330.00210 * 20 18 16 24 24 N 1.31131 * 106.89729 * 359.53556 * 13 12 11 25 25 H 1.08994 * 109.47372 * 269.95720 * 1 2 3 26 26 H 1.08998 * 109.47186 * 29.95752 * 1 2 3 27 27 H 1.09000 * 109.47140 * 149.95674 * 1 2 3 28 28 H 1.08992 * 109.47219 * 90.02393 * 5 4 3 29 29 H 1.09000 * 109.46392 * 210.02609 * 5 4 3 30 30 H 1.09001 * 109.46893 * 330.01862 * 5 4 3 31 31 H 1.08993 * 109.47248 * 149.68596 * 9 8 6 32 32 H 1.09002 * 109.46889 * 29.68583 * 9 8 6 33 33 H 1.09001 * 109.47434 * 149.68522 * 14 13 12 34 34 H 1.08999 * 109.47072 * 29.69002 * 14 13 12 35 35 H 0.97004 * 120.00604 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0599 0.0000 4 7 3.6089 0.6350 -0.0006 5 6 4.7894 1.5026 -0.0003 6 6 3.6153 -0.7147 0.0041 7 17 5.0221 -1.7318 0.0111 8 6 2.3269 -1.1331 -0.0006 9 6 1.8597 -2.5659 -0.0001 10 6 1.7027 -3.0436 -1.4207 11 7 0.6266 -2.9631 -2.1448 12 8 0.8254 -3.4315 -3.2459 13 6 2.0825 -3.8778 -3.3280 14 6 2.7261 -4.5325 -4.5231 15 16 2.4858 -6.3242 -4.4316 16 6 3.3120 -6.8193 -5.9070 17 1 3.7690 -6.0774 -6.5451 18 6 3.3810 -8.1635 -6.2461 19 7 2.8289 -9.0683 -5.4657 20 14 4.2563 -8.6885 -7.8106 21 1 5.6886 -8.9453 -7.5142 22 1 3.6296 -9.9279 -8.3364 23 1 4.1465 -7.6095 -8.8250 24 7 2.6505 -3.6320 -2.1720 25 1 -0.3634 -0.0008 1.0276 26 1 -0.3633 0.8903 -0.5132 27 1 -0.3633 -0.8896 -0.5145 28 1 5.0827 1.7167 1.0274 29 1 5.6089 1.0011 -0.5151 30 1 4.5549 2.4354 -0.5131 31 1 0.9014 -2.6354 0.5146 32 1 2.5937 -3.1872 0.5131 33 1 3.7928 -4.3088 -4.5293 34 1 2.2695 -4.1508 -5.4363 35 1 2.8767 -10.0077 -5.7028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278027681.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:08 Heat of formation + Delta-G solvation = 111.348164 kcal Electronic energy + Delta-G solvation = -22262.003595 eV Core-core repulsion = 18644.518304 eV Total energy + Delta-G solvation = -3617.485291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.050 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.53128 -42.54074 -37.98825 -37.26615 -35.61513 -34.64389 -34.51192 -32.60192 -30.75666 -29.93456 -28.75962 -27.66922 -26.11286 -24.53409 -22.96212 -21.82193 -20.96308 -19.83297 -19.16618 -18.39798 -17.88166 -17.02551 -16.87988 -16.40667 -16.06989 -15.77122 -15.37612 -15.19818 -14.75002 -14.50806 -14.35080 -14.22963 -13.67983 -13.57707 -13.48483 -13.28522 -13.16745 -13.01649 -12.88584 -12.86105 -12.70683 -12.67082 -12.34649 -12.01449 -11.88469 -11.65136 -11.14183 -10.93171 -10.35444 -10.26132 -9.65039 -8.73063 -8.37221 -6.16055 -0.03181 0.31712 0.42508 1.03412 1.34702 1.41846 1.45275 1.54744 1.58154 1.67819 1.87258 2.24319 2.70140 2.99488 3.06462 3.24472 3.29030 3.82103 3.86385 4.04886 4.13690 4.21357 4.27169 4.27452 4.46022 4.53412 4.59546 4.73563 4.74956 4.83949 4.88719 4.94481 5.01934 5.42368 5.44004 5.58670 6.19960 6.37508 7.05845 7.15077 8.72154 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.020372 B = 0.002810 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.116776 B = 9961.707643 C =10710.961723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.092 3.908 3 N -0.297 5.297 4 N -0.368 5.368 5 C 0.086 3.914 6 C 0.134 3.866 7 Cl 0.016 6.984 8 C -0.230 4.230 9 C 0.054 3.946 10 C 0.181 3.819 11 N -0.393 5.393 12 O 0.065 5.935 13 C 0.216 3.784 14 C -0.018 4.018 15 S -0.144 6.144 16 C -0.538 4.538 17 H 0.089 0.911 18 C 0.019 3.981 19 N -0.909 5.909 20 Si 0.997 3.003 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.258 1.258 24 N -0.484 5.484 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.954 19.927 12.030 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.074 4.074 3 N -0.121 5.121 4 N -0.152 5.152 5 C -0.053 4.053 6 C -0.021 4.021 7 Cl 0.044 6.956 8 C -0.244 4.244 9 C 0.014 3.986 10 C -0.093 4.093 11 N -0.105 5.105 12 O 0.011 5.989 13 C -0.004 4.004 14 C -0.167 4.167 15 S 0.082 5.918 16 C -0.686 4.686 17 H 0.107 0.893 18 C -0.187 4.187 19 N -0.545 5.545 20 Si 0.819 3.181 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.182 1.182 24 N -0.219 5.219 25 H 0.122 0.878 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.143 0.857 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.287 20.782 13.411 24.767 hybrid contribution 1.391 -0.904 -1.894 2.518 sum 2.678 19.878 11.517 23.128 Atomic orbital electron populations 1.20365 0.84178 1.04132 1.04751 1.22591 0.98375 0.89031 0.97383 1.77451 0.85785 1.22128 1.26784 1.48829 1.06899 1.02916 1.56522 1.22325 0.82526 0.94943 1.05523 1.21693 0.90970 0.84567 1.04902 1.98445 1.36948 1.63515 1.96680 1.19315 0.90244 0.95980 1.18875 1.18264 1.05251 0.90347 0.84731 1.26157 0.84672 0.97527 1.00930 1.74519 1.23988 1.19133 0.92813 1.85269 1.30865 1.55400 1.27407 1.27990 0.81978 0.94170 0.96304 1.21719 1.03141 0.99070 0.92738 1.85208 1.75073 0.96084 1.35437 1.23093 1.41270 0.95893 1.08299 0.89299 1.26051 0.95906 0.95354 1.01342 1.70136 1.43267 1.02101 1.38987 0.84971 0.78046 0.78005 0.77123 1.19458 1.20396 1.18150 1.71941 1.30594 1.17678 1.01701 0.87761 0.90071 0.90114 0.88238 0.88164 0.87554 0.85710 0.87236 0.86302 0.86184 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 10.12 71.24 0.72 -0.60 16 2 C 0.09 2.14 7.22 43.10 0.31 2.45 16 3 N -0.30 -7.30 12.57 -47.39 -0.60 -7.89 16 4 N -0.37 -7.97 4.01 -359.27 -1.44 -9.41 16 5 C 0.09 1.07 11.31 127.77 1.44 2.52 16 6 C 0.13 3.15 7.45 83.57 0.62 3.77 16 7 Cl 0.02 0.35 28.34 -2.72 -0.08 0.27 16 8 C -0.23 -5.60 5.34 -20.11 -0.11 -5.71 16 9 C 0.05 1.29 5.83 29.10 0.17 1.46 16 10 C 0.18 5.72 7.45 138.46 1.03 6.75 16 11 N -0.39 -13.18 12.16 -60.32 -0.73 -13.92 16 12 O 0.07 2.35 11.31 74.84 0.85 3.20 16 13 C 0.22 7.97 7.77 88.38 0.69 8.66 16 14 C -0.02 -0.67 6.30 71.24 0.45 -0.22 16 15 S -0.14 -7.27 21.42 -56.49 -1.21 -8.48 16 16 C -0.54 -28.75 9.50 67.95 0.65 -28.11 16 17 H 0.09 4.42 7.80 -2.91 -0.02 4.40 16 18 C 0.02 1.02 5.49 84.86 0.47 1.48 16 19 N -0.91 -52.79 13.22 21.65 0.29 -52.51 16 20 Si 1.00 41.64 29.55 68.60 2.03 43.67 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 22 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 N -0.48 -17.39 11.55 -303.19 -3.50 -20.89 16 25 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.52 7.92 -2.39 -0.02 1.50 16 28 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.04 7.81 -2.39 -0.02 1.02 16 30 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.12 2.39 7.92 -2.39 -0.02 2.37 16 32 H 0.11 2.48 7.90 -2.39 -0.02 2.46 16 33 H 0.12 4.28 8.14 -2.39 -0.02 4.26 16 34 H 0.12 4.08 8.14 -2.40 -0.02 4.06 16 35 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -68.44 345.75 3.17 -65.27 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.14 Total: 8.26 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 6.44 Total: -7.56 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -5.99 Total: -104.62 kcal Atomic # 8 Polarization: 2.35 SS G_CDS: 0.85 Total: 3.20 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: -7.27 SS G_CDS: -1.21 Total: -8.48 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -0.08 Total: 0.27 kcal Total: -68.44 3.17 -65.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278027681.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.615 kcal (2) G-P(sol) polarization free energy of solvation -68.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds