Wall clock time and date at job start Tue Mar 31 2020 15:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34763 * 117.00080 * 2 1 4 4 O 1.21516 * 119.99988 * 359.97438 * 3 2 1 5 5 C 1.47289 * 119.99881 * 179.97438 * 3 2 1 6 6 C 1.39830 * 120.20871 * 359.97438 * 5 3 2 7 7 C 1.37708 * 119.94105 * 180.02562 * 6 5 3 8 8 N 1.48023 * 119.81436 * 179.97438 * 7 6 5 9 9 O 1.21798 * 119.99772 * 0.02562 * 8 7 6 10 10 O 1.21800 * 120.00103 * 180.02562 * 8 7 6 11 11 C 1.38634 * 120.37316 * 0.02562 * 7 6 5 12 12 C 1.38039 * 120.41896 * 359.71444 * 11 7 6 13 13 Cl 1.73601 * 119.97216 * 180.30427 * 12 11 7 14 14 C 1.39059 * 120.04787 * 0.55950 * 12 11 7 15 15 N 1.38898 * 120.18107 * 179.72246 * 14 12 11 16 16 C 1.46906 * 110.99671 * 263.92583 * 15 14 12 17 17 H 1.08993 * 109.47400 * 325.61190 * 16 15 14 18 18 C 1.53000 * 109.46633 * 85.61138 * 16 15 14 19 19 C 1.50697 * 109.47051 * 205.60709 * 16 15 14 20 20 H 1.08004 * 120.00095 * 0.02562 * 19 16 15 21 21 C 1.37875 * 120.00081 * 180.02562 * 19 16 15 22 22 N 1.31514 * 119.99945 * 179.97438 * 21 19 16 23 23 Si 1.86804 * 119.99896 * 359.97438 * 21 19 16 24 24 H 1.48500 * 109.47106 * 90.00416 * 23 21 19 25 25 H 1.48495 * 109.47074 * 210.00383 * 23 21 19 26 26 H 1.48502 * 109.47005 * 330.00055 * 23 21 19 27 27 H 1.08999 * 109.47157 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47189 * 300.00104 * 1 2 3 29 29 H 1.09003 * 109.46572 * 60.00484 * 1 2 3 30 30 H 1.08005 * 120.02985 * 359.97438 * 6 5 3 31 31 H 1.07997 * 119.79382 * 179.97438 * 11 7 6 32 32 H 1.00897 * 111.00041 * 27.88286 * 15 14 12 33 33 H 1.09005 * 109.47320 * 293.62680 * 18 16 15 34 34 H 1.08993 * 109.47600 * 53.62666 * 18 16 15 35 35 H 1.09002 * 109.47185 * 173.63582 * 18 16 15 36 36 H 0.97003 * 119.99581 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2007 0.0000 4 8 1.4021 2.2199 -0.0005 5 6 3.5348 1.2778 0.0006 6 6 4.3005 0.1078 0.0017 7 6 5.6754 0.1863 0.0027 8 7 6.4833 -1.0540 0.0044 9 8 5.9318 -2.1400 0.0044 10 8 7.6996 -0.9886 0.0059 11 6 6.3071 1.4203 0.0033 12 6 5.5660 2.5849 -0.0032 13 17 6.3690 4.1239 -0.0104 14 6 4.1766 2.5261 0.0015 15 7 3.4282 3.6961 0.0008 16 6 3.0267 4.0650 1.3649 17 1 2.8415 3.1616 1.9460 18 6 4.1448 4.8751 2.0241 19 6 1.7697 4.8945 1.3117 20 1 1.3144 5.1244 0.3597 21 6 1.2010 5.3600 2.4782 22 7 0.1043 6.0844 2.4316 23 14 1.9882 4.9618 4.1248 24 1 2.9694 6.0206 4.4733 25 1 0.9379 4.8960 5.1725 26 1 2.6830 3.6522 4.0375 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 3.8142 -0.8565 0.0025 31 1 7.3859 1.4709 0.0045 32 1 3.9333 4.4482 -0.4433 33 1 5.0191 4.2396 2.1654 34 1 4.4079 5.7181 1.3853 35 1 3.8041 5.2445 2.9913 36 1 -0.2960 6.4116 3.2524 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279338420.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:09 Heat of formation + Delta-G solvation = -55.823679 kcal Electronic energy + Delta-G solvation = -26340.772561 eV Core-core repulsion = 22240.992533 eV Total energy + Delta-G solvation = -4099.780028 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.36104 -41.97992 -40.53621 -38.21977 -37.92183 -37.71343 -37.20460 -34.85565 -33.15352 -32.73262 -30.52025 -28.65451 -27.28328 -26.86931 -25.58551 -23.73966 -22.87590 -21.96603 -20.45170 -19.93301 -19.32145 -18.68759 -18.47778 -17.98416 -17.67943 -17.42273 -17.15811 -16.93696 -16.35440 -15.72834 -15.27571 -14.92374 -14.68559 -14.47322 -14.31723 -14.09231 -13.86185 -13.54268 -13.23726 -13.01424 -12.97640 -12.74846 -12.71269 -12.58636 -12.36108 -12.30588 -12.00411 -11.75104 -11.61327 -11.57410 -11.45636 -10.87453 -10.79355 -10.50912 -9.51023 -8.28281 -6.29291 -1.42716 -0.86317 -0.03478 0.05900 0.66527 1.21216 1.22998 1.28939 1.37228 1.58308 2.03157 2.26258 2.67160 3.04130 3.09642 3.24044 3.31335 3.52672 3.91629 4.01150 4.19160 4.25576 4.35893 4.37445 4.40801 4.41847 4.44144 4.59632 4.73760 4.80268 5.16710 5.19521 5.32987 5.49917 5.69247 6.16546 6.44360 6.45489 6.74198 6.79892 7.30662 8.89130 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.005437 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.854324 B = 5148.687773 C = 6561.667772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.487 3.513 4 O -0.463 6.463 5 C -0.133 4.133 6 C 0.038 3.962 7 C -0.078 4.078 8 N 0.039 4.961 9 O -0.168 6.168 10 O -0.160 6.160 11 C 0.018 3.982 12 C -0.105 4.105 13 Cl -0.014 7.014 14 C 0.234 3.766 15 N -0.618 5.618 16 C 0.216 3.784 17 H 0.025 0.975 18 C -0.182 4.182 19 C -0.479 4.479 20 H 0.039 0.961 21 C 0.014 3.986 22 N -0.946 5.946 23 Si 0.936 3.064 24 H -0.259 1.259 25 H -0.299 1.299 26 H -0.256 1.256 27 H 0.142 0.858 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.188 0.812 31 H 0.192 0.808 32 H 0.364 0.636 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.221 -12.371 -4.469 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.277 6.277 3 C 0.328 3.672 4 O -0.347 6.347 5 C -0.138 4.138 6 C 0.019 3.981 7 C -0.162 4.162 8 N 0.558 4.442 9 O -0.382 6.382 10 O -0.377 6.377 11 C -0.002 4.002 12 C -0.136 4.136 13 Cl 0.016 6.984 14 C 0.128 3.872 15 N -0.242 5.242 16 C 0.112 3.888 17 H 0.042 0.958 18 C -0.241 4.241 19 C -0.518 4.518 20 H 0.058 0.942 21 C -0.183 4.183 22 N -0.587 5.587 23 Si 0.763 3.237 24 H -0.184 1.184 25 H -0.227 1.227 26 H -0.180 1.180 27 H 0.160 0.840 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.205 0.795 31 H 0.209 0.791 32 H 0.188 0.812 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.859 -11.436 -4.502 16.400 hybrid contribution 0.433 0.535 0.932 1.159 sum 11.292 -10.901 -3.570 16.096 Atomic orbital electron populations 1.23510 0.74343 1.05750 1.02175 1.86465 1.25016 1.31335 1.84914 1.20724 0.88587 0.82432 0.75424 1.91209 1.65981 1.35767 1.41732 1.18638 0.90523 0.91644 1.13021 1.21317 0.90459 1.00427 0.85933 1.20550 0.91094 0.84548 1.20025 1.43406 1.01236 1.02376 0.97205 1.94565 1.74488 1.15090 1.54065 1.94538 0.95659 1.93946 1.53514 1.21012 1.03428 0.87163 0.88609 1.21080 0.91284 0.89493 1.11733 1.98421 1.77945 1.25282 1.96794 1.19214 0.89170 0.92434 0.86361 1.57210 1.41318 1.04637 1.20998 1.19375 0.93483 0.94382 0.81565 0.95761 1.22926 0.98566 1.01463 1.01110 1.20866 1.07686 1.29777 0.93471 0.94231 1.25645 0.95443 0.94984 1.02236 1.70019 1.21889 1.37853 1.28934 0.86080 0.77783 0.79986 0.79864 1.18431 1.22699 1.17999 0.83981 0.93121 0.92201 0.79476 0.79132 0.81172 0.91796 0.91011 0.93747 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.57 113.37 1.20 2.02 16 2 O -0.36 -9.96 9.81 -56.74 -0.56 -10.51 16 3 C 0.49 16.62 7.73 70.20 0.54 17.16 16 4 O -0.46 -20.24 13.10 19.78 0.26 -19.98 16 5 C -0.13 -3.89 5.76 -19.99 -0.12 -4.01 16 6 C 0.04 0.88 9.11 22.53 0.21 1.08 16 7 C -0.08 -1.69 6.84 36.34 0.25 -1.44 16 8 N 0.04 0.94 4.45 -46.53 -0.21 0.73 16 9 O -0.17 -4.22 18.42 18.89 0.35 -3.88 16 10 O -0.16 -3.85 18.43 18.89 0.35 -3.50 16 11 C 0.02 0.36 9.32 22.32 0.21 0.57 16 12 C -0.10 -2.47 5.94 22.42 0.13 -2.34 16 13 Cl -0.01 -0.30 24.91 -2.72 -0.07 -0.36 16 14 C 0.23 7.06 5.06 38.74 0.20 7.26 16 15 N -0.62 -23.01 4.56 -320.98 -1.46 -24.47 16 16 C 0.22 9.39 1.09 44.17 0.05 9.43 16 17 H 0.02 1.13 6.51 -2.39 -0.02 1.11 16 18 C -0.18 -6.79 7.38 71.98 0.53 -6.26 16 19 C -0.48 -26.37 8.70 25.60 0.22 -26.15 16 20 H 0.04 2.51 8.06 -2.91 -0.02 2.48 16 21 C 0.01 0.78 5.45 84.65 0.46 1.25 16 22 N -0.95 -58.25 13.96 21.45 0.30 -57.95 16 23 Si 0.94 43.23 24.42 68.60 1.68 44.90 16 24 H -0.26 -11.11 6.82 99.48 0.68 -10.43 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.26 -11.01 6.53 99.48 0.65 -10.37 16 27 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.19 3.64 7.14 -2.91 -0.02 3.62 16 31 H 0.19 2.79 7.59 -2.91 -0.02 2.77 16 32 H 0.36 12.36 6.88 -89.70 -0.62 11.75 16 33 H 0.06 1.98 6.55 -2.38 -0.02 1.96 16 34 H 0.07 2.51 7.92 -2.39 -0.02 2.49 16 35 H 0.04 1.78 3.22 -2.39 -0.01 1.77 16 36 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -68.30 322.06 4.98 -63.32 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.46 Total: 13.13 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 3.88 Total: -1.43 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -1.37 Total: -81.69 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: 0.40 Total: -37.87 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.68 Total: 44.90 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.07 Total: -0.36 kcal Total: -68.30 4.98 -63.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279338420.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.499 kcal (2) G-P(sol) polarization free energy of solvation -68.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds