Wall clock time and date at job start Tue Mar 31 2020 15:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34771 * 116.99751 * 2 1 4 4 O 1.21520 * 120.00275 * 0.02562 * 3 2 1 5 5 C 1.47290 * 119.99867 * 180.02562 * 3 2 1 6 6 C 1.39837 * 120.21000 * 5.06960 * 5 3 2 7 7 C 1.37703 * 119.93897 * 180.27529 * 6 5 3 8 8 N 1.48025 * 119.81029 * 179.76866 * 7 6 5 9 9 O 1.21804 * 119.99525 * 179.97438 * 8 7 6 10 10 O 1.21792 * 120.00404 * 359.97438 * 8 7 6 11 11 C 1.38633 * 120.37301 * 359.74698 * 7 6 5 12 12 C 1.38022 * 120.42454 * 359.97438 * 11 7 6 13 13 Cl 1.73601 * 119.97614 * 179.97438 * 12 11 7 14 14 C 1.39065 * 120.05090 * 359.97438 * 12 11 7 15 15 N 1.38895 * 120.18796 * 180.02562 * 14 12 11 16 16 C 1.46894 * 111.00294 * 276.20364 * 15 14 12 17 17 C 1.52999 * 109.47291 * 185.10994 * 16 15 14 18 18 C 1.50695 * 109.47142 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00161 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99764 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00130 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99981 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47183 * 59.99494 * 22 20 18 24 24 H 1.48500 * 109.46930 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46644 * 299.99599 * 22 20 18 26 26 H 1.09004 * 109.47115 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47581 * 299.99360 * 1 2 3 28 28 H 1.09000 * 109.47352 * 60.00043 * 1 2 3 29 29 H 1.08002 * 120.02951 * 0.04539 * 6 5 3 30 30 H 1.08000 * 119.78903 * 180.02562 * 11 7 6 31 31 H 1.00901 * 110.99726 * 40.16077 * 15 14 12 32 32 H 1.09006 * 109.47250 * 305.11126 * 16 15 14 33 33 H 1.08996 * 109.47132 * 65.10569 * 16 15 14 34 34 H 1.09006 * 109.47081 * 300.00236 * 17 16 15 35 35 H 1.08996 * 109.47380 * 59.99726 * 17 16 15 36 36 H 0.97008 * 119.99998 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4019 2.2200 0.0005 5 6 3.5346 1.2780 -0.0006 6 6 4.3002 0.1127 -0.1079 7 6 5.6750 0.1908 -0.1021 8 7 6.4827 -1.0449 -0.2108 9 8 7.6990 -0.9797 -0.2065 10 8 5.9312 -2.1267 -0.3044 11 6 6.3069 1.4202 0.0043 12 6 5.5661 2.5804 0.1053 13 17 6.3694 4.1135 0.2388 14 6 4.1767 2.5221 0.1002 15 7 3.4284 3.6879 0.2011 16 6 3.2696 4.0917 1.6045 17 6 2.3373 5.3023 1.6845 18 6 2.1749 5.7169 3.1241 19 1 2.6851 5.1714 3.9041 20 6 1.3740 6.7922 3.4457 21 7 0.7522 7.4563 2.4959 22 14 1.1731 7.3067 5.2302 23 1 2.4991 7.6656 5.7941 24 1 0.2682 8.4816 5.3078 25 1 0.5928 6.1821 6.0072 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.8137 -0.8479 -0.1915 30 1 7.3857 1.4705 0.0075 31 1 3.8402 4.4302 -0.3444 32 1 2.8427 3.2662 2.1741 33 1 4.2426 4.3544 2.0193 34 1 2.7642 6.1279 1.1149 35 1 1.3642 5.0396 1.2696 36 1 0.1890 8.2130 2.7221 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279375003.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:02 Heat of formation + Delta-G solvation = -56.015010 kcal Electronic energy + Delta-G solvation = -25341.453717 eV Core-core repulsion = 21241.665392 eV Total energy + Delta-G solvation = -4099.788325 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.44435 -40.92261 -39.53071 -37.03375 -36.78617 -36.71463 -35.98400 -33.27426 -32.18587 -31.28011 -29.15459 -27.82185 -26.14662 -24.80323 -24.14061 -22.62060 -21.33298 -20.90036 -19.54439 -19.00210 -17.77972 -17.62172 -17.37755 -16.82789 -16.46979 -16.28005 -16.00535 -15.46319 -14.99383 -14.46338 -14.23118 -13.83612 -13.55668 -13.33123 -13.00757 -12.74844 -12.26619 -12.16899 -12.11283 -11.81303 -11.66196 -11.43329 -11.35720 -11.28480 -11.05386 -10.80400 -10.73916 -10.58172 -10.24813 -9.99551 -9.68757 -9.44666 -9.29050 -8.51973 -8.38007 -6.08377 -4.12170 -0.52853 0.01180 0.89330 0.96293 1.56382 2.14644 2.48123 2.99394 3.27454 3.32404 3.34068 3.69972 3.94814 4.10900 4.17978 4.37690 4.48328 4.80276 4.97209 5.05835 5.08976 5.16981 5.26849 5.27886 5.46589 5.51640 5.89381 5.98671 6.09010 6.27429 6.65296 6.92324 7.22595 7.39708 7.56561 7.73416 7.75373 7.94339 8.27859 8.93677 9.51856 11.02707 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012487 B = 0.003805 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.812035 B = 7357.322186 C = 8800.298433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.364 6.364 3 C 0.498 3.502 4 O -0.431 6.431 5 C -0.109 4.109 6 C 0.015 3.985 7 C -0.069 4.069 8 N 0.036 4.964 9 O -0.159 6.159 10 O -0.154 6.154 11 C -0.006 4.006 12 C -0.102 4.102 13 Cl -0.018 7.018 14 C 0.244 3.756 15 N -0.632 5.632 16 C 0.079 3.921 17 C 0.031 3.969 18 C -0.526 4.526 19 H 0.054 0.946 20 C 0.062 3.938 21 N -0.890 5.890 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.101 0.899 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.174 0.826 30 H 0.167 0.833 31 H 0.362 0.638 32 H 0.063 0.937 33 H 0.036 0.964 34 H 0.017 0.983 35 H 0.034 0.966 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.546 -14.764 -7.558 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.282 6.282 3 C 0.338 3.662 4 O -0.313 6.313 5 C -0.113 4.113 6 C -0.005 4.005 7 C -0.153 4.153 8 N 0.556 4.444 9 O -0.375 6.375 10 O -0.371 6.371 11 C -0.026 4.026 12 C -0.133 4.133 13 Cl 0.011 6.989 14 C 0.141 3.859 15 N -0.261 5.261 16 C -0.043 4.043 17 C -0.007 4.007 18 C -0.564 4.564 19 H 0.072 0.928 20 C -0.141 4.141 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.191 0.809 30 H 0.184 0.816 31 H 0.186 0.814 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.036 0.964 35 H 0.052 0.948 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.199 -13.768 -7.521 16.869 hybrid contribution 0.861 0.544 1.035 1.452 sum 7.060 -13.225 -6.485 16.334 Atomic orbital electron populations 1.23287 0.75349 1.03624 1.03136 1.86488 1.24016 1.32529 1.85214 1.20274 0.87716 0.82295 0.75948 1.91080 1.65059 1.34798 1.40403 1.18782 0.91183 0.91326 1.09999 1.21322 0.90475 1.00639 0.88038 1.20617 0.91299 0.84917 1.18511 1.43365 1.01295 1.02232 0.97550 1.94555 0.95438 1.93594 1.53874 1.94559 1.74460 1.15009 1.53044 1.20883 1.02557 0.88314 0.90867 1.21516 0.92795 0.89105 1.09850 1.98446 1.78440 1.25803 1.96237 1.19120 0.87920 0.93225 0.85630 1.57872 1.48868 1.04135 1.15202 1.22394 1.00103 1.00848 0.81000 1.19059 0.94731 0.89796 0.97095 1.21028 1.29060 1.14121 0.92242 0.92799 1.24966 0.95463 0.96307 0.97315 1.69958 1.30447 1.20302 1.32118 0.86640 0.78070 0.78112 0.85080 1.20217 1.21168 1.20194 0.88031 0.91404 0.91668 0.80889 0.81583 0.81364 0.91811 0.94549 0.96428 0.94761 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.57 101.05 1.07 1.45 16 2 O -0.36 -4.38 9.83 -40.68 -0.40 -4.78 16 3 C 0.50 7.21 7.88 34.41 0.27 7.49 16 4 O -0.43 -7.83 14.66 -19.28 -0.28 -8.11 16 5 C -0.11 -1.41 5.89 -104.82 -0.62 -2.03 16 6 C 0.02 0.16 9.11 -39.18 -0.36 -0.19 16 7 C -0.07 -0.77 6.84 -79.99 -0.55 -1.31 16 8 N 0.04 0.43 4.45 33.94 0.15 0.59 16 9 O -0.16 -2.02 18.43 -29.46 -0.54 -2.56 16 10 O -0.15 -1.95 18.42 -29.46 -0.54 -2.50 16 11 C -0.01 -0.06 9.31 -39.51 -0.37 -0.43 16 12 C -0.10 -1.20 6.30 -39.35 -0.25 -1.45 16 13 Cl -0.02 -0.22 26.95 -51.86 -1.40 -1.61 16 14 C 0.24 3.36 5.25 -83.55 -0.44 2.92 16 15 N -0.63 -10.47 4.21 -58.13 -0.24 -10.72 16 16 C 0.08 1.55 5.20 -3.83 -0.02 1.53 16 17 C 0.03 0.76 5.28 -27.89 -0.15 0.62 16 18 C -0.53 -14.39 9.11 -34.44 -0.31 -14.71 16 19 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 22 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.17 1.60 7.15 -52.49 -0.38 1.22 16 30 H 0.17 1.43 7.59 -52.49 -0.40 1.03 16 31 H 0.36 5.63 7.79 -39.29 -0.31 5.33 16 32 H 0.06 1.29 8.11 -51.93 -0.42 0.87 16 33 H 0.04 0.68 7.43 -51.93 -0.39 0.29 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -30.95 342.13 -7.75 -38.70 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -3.54 Total: -0.42 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.82 Total: -4.48 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.64 Total: -35.57 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -1.77 Total: -17.94 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.40 Total: -1.61 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.95 -7.75 -38.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279375003.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.318 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds