Wall clock time and date at job start Tue Mar 31 2020 15:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00200 * 2 1 4 4 C 1.50700 * 109.46652 * 269.99846 * 3 2 1 5 5 C 1.34849 * 125.88252 * 94.97474 * 4 3 2 6 6 C 1.40929 * 107.43096 * 180.02562 * 5 4 3 7 7 Br 1.89105 * 126.29929 * 180.02562 * 6 5 4 8 8 C 1.34903 * 107.40756 * 359.73498 * 6 5 4 9 9 N 1.36338 * 125.87881 * 274.99095 * 4 3 2 10 10 C 1.46499 * 125.63842 * 359.97438 * 9 4 3 11 11 C 1.34782 * 120.00042 * 179.97438 * 2 1 3 12 12 O 1.21284 * 120.00013 * 180.02562 * 11 2 1 13 13 C 1.50701 * 119.99784 * 0.02562 * 11 2 1 14 14 C 1.53002 * 109.46793 * 180.02562 * 13 11 2 15 15 C 1.50701 * 109.46793 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00144 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99723 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00059 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99963 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47060 * 89.99902 * 19 17 15 21 21 H 1.48494 * 109.47401 * 209.99981 * 19 17 15 22 22 H 1.48504 * 109.47215 * 330.00470 * 19 17 15 23 23 H 1.09004 * 109.46918 * 90.00643 * 1 2 3 24 24 H 1.09006 * 109.47203 * 210.00052 * 1 2 3 25 25 H 1.08992 * 109.47503 * 330.00464 * 1 2 3 26 26 H 1.08997 * 109.47474 * 149.99548 * 3 2 1 27 27 H 1.09002 * 109.47052 * 29.99357 * 3 2 1 28 28 H 1.07998 * 126.28601 * 0.04075 * 5 4 3 29 29 H 1.08000 * 125.90388 * 180.29372 * 8 6 5 30 30 H 1.09002 * 109.47391 * 89.99367 * 10 9 4 31 31 H 1.09001 * 109.46813 * 329.99423 * 10 9 4 32 32 H 1.09004 * 109.47041 * 209.99550 * 10 9 4 33 33 H 1.09000 * 109.47318 * 299.99651 * 13 11 2 34 34 H 1.08991 * 109.47192 * 60.00116 * 13 11 2 35 35 H 1.08993 * 109.47154 * 300.00099 * 14 13 11 36 36 H 1.09000 * 109.47161 * 60.00409 * 14 13 11 37 37 H 0.96994 * 120.00045 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 6 1.6825 2.5533 -2.1345 6 6 2.2715 2.6849 -3.4080 7 35 1.6322 3.7518 -4.8324 8 6 3.3790 1.9147 -3.4219 9 7 3.4896 1.3055 -2.2062 10 6 4.5542 0.3810 -1.8084 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3796 -3.6352 0.0018 15 6 1.6261 -4.9403 0.0024 16 1 0.5461 -4.9403 0.0016 17 6 2.3155 -6.1344 0.0042 18 7 3.6307 -6.1344 0.0047 19 14 1.3816 -7.7521 0.0057 20 1 1.1347 -8.1825 -1.3941 21 1 2.1838 -8.7862 0.7072 22 1 0.0836 -7.5737 0.7049 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5137 26 1 3.1499 1.1384 0.5139 27 1 1.6084 2.0284 0.5137 28 1 0.7827 3.0433 -1.7928 29 1 4.0594 1.7988 -4.2526 30 1 4.2583 -0.6398 -2.0505 31 1 4.7258 0.4648 -0.7353 32 1 5.4706 0.6303 -2.3435 33 1 0.7584 -2.5299 0.8903 34 1 0.7591 -2.5303 -0.8896 35 1 3.0070 -3.5779 -0.8876 36 1 3.0056 -3.5771 0.8923 37 1 4.1157 -6.9744 0.0063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291886410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:25 Heat of formation + Delta-G solvation = 9.549297 kcal Electronic energy + Delta-G solvation = -20088.575868 eV Core-core repulsion = 16913.036033 eV Total energy + Delta-G solvation = -3175.539834 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.42435 -39.31432 -35.41429 -33.58980 -33.17213 -31.56325 -30.76799 -29.76469 -26.91451 -26.29974 -25.94977 -24.61100 -21.54275 -20.45263 -19.47234 -18.61676 -17.01294 -16.95008 -16.12151 -15.70095 -15.27435 -14.94942 -14.43900 -14.13848 -13.62419 -13.26559 -12.97055 -12.83044 -12.60026 -12.55695 -12.35116 -12.25598 -12.16102 -11.90548 -11.70897 -11.15788 -10.96517 -10.78738 -10.62299 -10.17832 -10.00539 -9.68130 -9.26904 -9.09954 -8.61285 -8.52247 -8.36496 -8.11598 -6.01026 -4.05170 1.78941 2.00951 2.57784 3.00344 3.17107 3.30335 3.36482 3.38620 3.44745 4.43436 4.73384 4.79402 4.98306 5.00609 5.20520 5.30774 5.34382 5.40160 5.49783 5.53292 5.61383 5.78764 5.84822 5.95993 5.98975 6.16897 6.18439 6.58903 6.68408 6.82399 7.04028 7.20718 7.62470 7.68762 7.79546 8.00904 8.33277 8.62196 9.02800 9.58733 11.09878 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.002736 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.791678 B =10231.775312 C =10398.231453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.624 5.624 3 C 0.182 3.818 4 C 0.012 3.988 5 C -0.164 4.164 6 C -0.172 4.172 7 Br -0.046 7.046 8 C 0.028 3.972 9 N -0.423 5.423 10 C 0.075 3.925 11 C 0.513 3.487 12 O -0.536 6.536 13 C -0.128 4.128 14 C 0.040 3.960 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.141 0.859 29 H 0.168 0.832 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.021 0.979 36 H 0.023 0.977 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.139 21.962 -5.596 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.359 5.359 3 C 0.058 3.942 4 C -0.102 4.102 5 C -0.190 4.190 6 C -0.258 4.258 7 Br 0.037 6.963 8 C -0.108 4.108 9 N -0.096 5.096 10 C -0.066 4.066 11 C 0.304 3.696 12 O -0.412 6.412 13 C -0.168 4.168 14 C 0.002 3.998 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.529 5.529 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.159 0.841 29 H 0.185 0.815 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.039 0.961 36 H 0.041 0.959 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.279 21.945 -5.962 22.976 hybrid contribution -0.412 -1.143 0.093 1.219 sum -3.691 20.802 -5.869 21.927 Atomic orbital electron populations 1.21764 0.79366 1.03045 1.01885 1.48133 1.07061 1.05362 1.75353 1.19769 0.98733 0.86118 0.89569 1.20815 0.91561 1.01970 0.95879 1.20464 1.01838 1.04118 0.92601 1.20926 1.01680 1.07800 0.95378 1.96534 1.88035 1.67789 1.43892 1.21685 1.00219 0.99258 0.89630 1.44121 1.20808 1.34124 1.10587 1.22310 0.87836 0.93234 1.03219 1.21620 0.88482 0.85544 0.73967 1.90591 1.14327 1.87340 1.48929 1.21895 1.00748 0.91856 1.02318 1.18879 0.93102 0.89395 0.98399 1.21219 0.92942 0.91021 1.51392 0.92644 1.25014 0.94828 0.99231 0.95243 1.69985 1.06054 1.26610 1.50231 0.86597 0.79812 0.83483 0.78107 1.20657 1.21206 1.19848 0.92787 0.90415 0.91470 0.89254 0.88550 0.84150 0.81461 0.89454 0.88382 0.90656 0.90193 0.90370 0.96060 0.95861 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.29 59.85 0.62 1.48 16 2 N -0.62 -8.54 2.86 -182.95 -0.52 -9.06 16 3 C 0.18 2.17 5.61 -5.19 -0.03 2.14 16 4 C 0.01 0.16 6.47 -81.79 -0.53 -0.37 16 5 C -0.16 -2.04 10.75 -39.77 -0.43 -2.47 16 6 C -0.17 -2.19 6.57 -39.75 -0.26 -2.45 16 7 Br -0.05 -0.52 34.09 -68.01 -2.32 -2.84 16 8 C 0.03 0.35 11.40 -16.69 -0.19 0.16 16 9 N -0.42 -5.67 3.15 -119.86 -0.38 -6.05 16 10 C 0.07 0.99 9.34 59.85 0.56 1.54 16 11 C 0.51 9.21 7.67 -10.98 -0.08 9.13 16 12 O -0.54 -10.91 11.63 5.55 0.06 -10.84 16 13 C -0.13 -2.52 4.19 -27.88 -0.12 -2.64 16 14 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 15 C -0.53 -14.68 9.11 -34.44 -0.31 -14.99 16 16 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 25 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 26 H 0.09 1.15 6.50 -51.93 -0.34 0.81 16 27 H 0.10 0.86 7.89 -51.93 -0.41 0.45 16 28 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.09 1.39 7.22 -51.93 -0.37 1.01 16 31 H 0.10 1.35 6.01 -51.93 -0.31 1.04 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.44 7.40 -51.93 -0.38 1.06 16 34 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 35 H 0.02 0.60 8.10 -51.93 -0.42 0.18 16 36 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 329.12 15.07 4.96 4.96 Total: -1.00 -32.24 329.12 -8.53 -40.77 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.06 Total: -1.18 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -0.99 Total: -5.98 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: -0.16 Total: -41.27 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.06 Total: -10.84 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -2.32 Total: -2.84 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.24 -8.53 -40.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291886410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.322 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds