Wall clock time and date at job start Tue Mar 31 2020 15:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00200 * 2 1 4 4 C 1.50700 * 109.46652 * 269.99846 * 3 2 1 5 5 C 1.34849 * 125.88252 * 94.97474 * 4 3 2 6 6 C 1.40929 * 107.43096 * 180.02562 * 5 4 3 7 7 Br 1.89105 * 126.29929 * 180.02562 * 6 5 4 8 8 C 1.34903 * 107.40756 * 359.73498 * 6 5 4 9 9 N 1.36338 * 125.87881 * 274.99095 * 4 3 2 10 10 C 1.46499 * 125.63842 * 359.97438 * 9 4 3 11 11 C 1.34782 * 120.00042 * 179.97438 * 2 1 3 12 12 O 1.21284 * 120.00013 * 180.02562 * 11 2 1 13 13 C 1.50701 * 119.99784 * 0.02562 * 11 2 1 14 14 C 1.53002 * 109.46793 * 180.02562 * 13 11 2 15 15 C 1.50701 * 109.46793 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00144 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99723 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00059 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99963 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47060 * 89.99902 * 19 17 15 21 21 H 1.48494 * 109.47401 * 209.99981 * 19 17 15 22 22 H 1.48504 * 109.47215 * 330.00470 * 19 17 15 23 23 H 1.09004 * 109.46918 * 90.00643 * 1 2 3 24 24 H 1.09006 * 109.47203 * 210.00052 * 1 2 3 25 25 H 1.08992 * 109.47503 * 330.00464 * 1 2 3 26 26 H 1.08997 * 109.47474 * 149.99548 * 3 2 1 27 27 H 1.09002 * 109.47052 * 29.99357 * 3 2 1 28 28 H 1.07998 * 126.28601 * 0.04075 * 5 4 3 29 29 H 1.08000 * 125.90388 * 180.29372 * 8 6 5 30 30 H 1.09002 * 109.47391 * 89.99367 * 10 9 4 31 31 H 1.09001 * 109.46813 * 329.99423 * 10 9 4 32 32 H 1.09004 * 109.47041 * 209.99550 * 10 9 4 33 33 H 1.09000 * 109.47318 * 299.99651 * 13 11 2 34 34 H 1.08991 * 109.47192 * 60.00116 * 13 11 2 35 35 H 1.08993 * 109.47154 * 300.00099 * 14 13 11 36 36 H 1.09000 * 109.47161 * 60.00409 * 14 13 11 37 37 H 0.96994 * 120.00045 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 6 1.6825 2.5533 -2.1345 6 6 2.2715 2.6849 -3.4080 7 35 1.6322 3.7518 -4.8324 8 6 3.3790 1.9147 -3.4219 9 7 3.4896 1.3055 -2.2062 10 6 4.5542 0.3810 -1.8084 11 6 2.1389 -1.1672 0.0005 12 8 3.3517 -1.1672 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3796 -3.6352 0.0018 15 6 1.6261 -4.9403 0.0024 16 1 0.5461 -4.9403 0.0016 17 6 2.3155 -6.1344 0.0042 18 7 3.6307 -6.1344 0.0047 19 14 1.3816 -7.7521 0.0057 20 1 1.1347 -8.1825 -1.3941 21 1 2.1838 -8.7862 0.7072 22 1 0.0836 -7.5737 0.7049 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5137 26 1 3.1499 1.1384 0.5139 27 1 1.6084 2.0284 0.5137 28 1 0.7827 3.0433 -1.7928 29 1 4.0594 1.7988 -4.2526 30 1 4.2583 -0.6398 -2.0505 31 1 4.7258 0.4648 -0.7353 32 1 5.4706 0.6303 -2.3435 33 1 0.7584 -2.5299 0.8903 34 1 0.7591 -2.5303 -0.8896 35 1 3.0070 -3.5779 -0.8876 36 1 3.0056 -3.5771 0.8923 37 1 4.1157 -6.9744 0.0063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291886410.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:24 Heat of formation + Delta-G solvation = -8.971667 kcal Electronic energy + Delta-G solvation = -20089.378997 eV Core-core repulsion = 16913.036033 eV Total energy + Delta-G solvation = -3176.342964 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.41023 -40.64023 -36.63105 -35.59534 -34.18249 -33.20460 -31.96240 -30.86239 -28.02485 -27.82146 -26.96153 -26.03679 -23.35971 -21.42356 -20.58381 -19.90221 -18.76473 -17.95500 -17.58189 -17.08476 -16.58751 -16.41798 -16.03262 -15.25791 -14.87045 -14.41026 -14.30553 -14.15353 -13.89462 -13.70927 -13.48182 -13.40431 -13.28702 -13.13399 -12.92699 -12.81700 -12.70100 -12.43624 -11.91610 -11.73087 -11.57836 -11.30059 -11.08602 -10.66004 -10.57018 -9.72280 -9.51106 -9.10211 -8.19095 -6.32339 0.84170 1.01244 1.41441 1.43324 1.54250 1.59174 1.71769 2.11690 2.31554 2.44230 3.14168 3.76093 3.78316 3.95426 4.07492 4.24833 4.32611 4.38157 4.46481 4.50759 4.54301 4.59142 4.77203 4.80761 4.93146 4.96757 5.05268 5.12136 5.47683 5.58659 5.64002 5.73629 5.84618 6.06272 6.17972 6.22220 6.40030 6.85814 7.27208 7.37865 8.93126 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.002736 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.791678 B =10231.775312 C =10398.231453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.612 5.612 3 C 0.182 3.818 4 C -0.004 4.004 5 C -0.160 4.160 6 C -0.186 4.186 7 Br -0.034 7.034 8 C 0.020 3.980 9 N -0.434 5.434 10 C 0.086 3.914 11 C 0.508 3.492 12 O -0.570 6.570 13 C -0.117 4.117 14 C 0.049 3.951 15 C -0.544 4.544 16 H 0.072 0.928 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.256 1.256 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.075 0.925 27 H 0.136 0.864 28 H 0.161 0.839 29 H 0.184 0.816 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.090 0.910 35 H -0.019 1.019 36 H -0.015 1.015 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 22.992 -5.652 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.346 5.346 3 C 0.059 3.941 4 C -0.117 4.117 5 C -0.186 4.186 6 C -0.272 4.272 7 Br 0.050 6.950 8 C -0.115 4.115 9 N -0.108 5.108 10 C -0.056 4.056 11 C 0.298 3.702 12 O -0.450 6.450 13 C -0.157 4.157 14 C 0.011 3.989 15 C -0.582 4.582 16 H 0.090 0.910 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.793 3.207 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.180 1.180 23 H 0.075 0.925 24 H 0.097 0.903 25 H 0.122 0.878 26 H 0.093 0.907 27 H 0.154 0.846 28 H 0.178 0.822 29 H 0.201 0.799 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.000 1.000 36 H 0.004 0.996 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.775 23.021 -6.018 24.486 hybrid contribution 0.344 -1.368 0.065 1.413 sum -5.431 21.653 -5.953 23.104 Atomic orbital electron populations 1.22049 0.76942 1.05034 1.02686 1.48064 1.08519 1.04592 1.73377 1.19986 0.98778 0.85861 0.89471 1.21047 0.91766 1.02556 0.96336 1.20732 1.02116 1.03551 0.92242 1.21160 1.01855 1.08082 0.96078 1.96540 1.87839 1.67357 1.43287 1.22068 1.00694 0.99000 0.89770 1.44238 1.21086 1.34307 1.11171 1.22103 0.88924 0.91609 1.02930 1.21271 0.87964 0.86434 0.74494 1.90590 1.15684 1.87918 1.50777 1.21622 0.99363 0.90802 1.03872 1.18629 0.93509 0.92108 0.94645 1.21715 0.93882 0.91835 1.50766 0.91014 1.26071 0.95712 1.03709 0.94666 1.70154 1.08141 1.27738 1.51467 0.85385 0.78782 0.78027 0.78463 1.19874 1.21108 1.17978 0.92495 0.90251 0.87797 0.90666 0.84614 0.82155 0.79870 0.92839 0.89398 0.88095 0.88132 0.89145 1.00045 0.99641 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 10.29 127.77 1.31 2.64 16 2 N -0.61 -15.79 2.86 -851.12 -2.43 -18.22 16 3 C 0.18 4.03 5.61 85.63 0.48 4.51 16 4 C 0.00 -0.09 6.47 41.08 0.27 0.18 16 5 C -0.16 -3.61 10.75 22.15 0.24 -3.37 16 6 C -0.19 -4.41 6.57 22.16 0.15 -4.27 16 7 Br -0.03 -0.70 34.09 -20.37 -0.69 -1.40 16 8 C 0.02 0.48 11.40 83.21 0.95 1.43 16 9 N -0.43 -11.48 3.15 -533.12 -1.68 -13.16 16 10 C 0.09 2.34 9.34 127.77 1.19 3.54 16 11 C 0.51 18.43 7.67 87.66 0.67 19.10 16 12 O -0.57 -24.39 11.63 -3.04 -0.04 -24.43 16 13 C -0.12 -4.60 4.19 29.85 0.13 -4.48 16 14 C 0.05 2.64 4.26 29.85 0.13 2.77 16 15 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 16 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 17 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 18 N -0.93 -58.34 13.29 21.45 0.28 -58.05 16 19 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.08 1.41 6.44 -2.38 -0.02 1.39 16 25 H 0.10 1.12 7.89 -2.39 -0.02 1.10 16 26 H 0.07 1.91 6.50 -2.39 -0.02 1.90 16 27 H 0.14 1.92 7.89 -2.39 -0.02 1.90 16 28 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.18 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.05 1.83 7.22 -2.39 -0.02 1.81 16 31 H 0.09 2.57 6.01 -2.39 -0.01 2.55 16 32 H 0.10 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.10 3.51 7.40 -2.39 -0.02 3.49 16 34 H 0.09 3.31 8.11 -2.39 -0.02 3.29 16 35 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 36 H -0.01 -0.91 8.10 -2.39 -0.02 -0.92 16 37 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -72.48 329.12 4.74 -67.74 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.07 Total: 9.71 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 6.21 Total: -8.12 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -3.83 Total: -89.43 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.04 Total: -24.43 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -0.69 Total: -1.40 kcal Total: -72.48 4.74 -67.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291886410.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.769 kcal (2) G-P(sol) polarization free energy of solvation -72.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds