Wall clock time and date at job start Tue Mar 31 2020 14:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50692 * 119.99990 * 2 1 4 4 N 1.46503 * 109.47468 * 124.40194 * 3 2 1 5 5 C 1.46493 * 120.00071 * 94.79806 * 4 3 2 6 6 C 1.50701 * 109.47154 * 74.26656 * 5 4 3 7 7 H 1.08001 * 119.99773 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00093 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99908 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47414 * 89.99999 * 10 8 6 12 12 H 1.48501 * 109.47441 * 210.00281 * 10 8 6 13 13 H 1.48504 * 109.47374 * 330.00080 * 10 8 6 14 14 C 1.34775 * 119.99987 * 274.80283 * 4 3 2 15 15 O 1.21565 * 120.00003 * 1.98835 * 14 4 3 16 16 C 1.47765 * 120.00270 * 181.97974 * 14 4 3 17 17 C 1.39570 * 120.56441 * 25.87054 * 16 14 4 18 18 N 1.31653 * 120.60227 * 179.97438 * 17 16 14 19 19 C 1.31995 * 121.93792 * 359.97438 * 18 17 16 20 20 C 1.50697 * 119.45404 * 179.97438 * 19 18 17 21 21 C 1.38316 * 121.08914 * 359.97438 * 19 18 17 22 22 Cl 1.73594 * 120.36592 * 180.02562 * 21 19 18 23 23 C 1.38713 * 119.26069 * 359.78427 * 21 19 18 24 24 Cl 1.73603 * 120.87585 * 180.25578 * 23 21 19 25 25 H 1.07999 * 120.00214 * 185.01920 * 1 2 3 26 26 H 1.07998 * 119.99874 * 5.02970 * 1 2 3 27 27 H 1.08002 * 119.99616 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47442 * 4.40474 * 3 2 1 29 29 H 1.08995 * 109.47432 * 244.40116 * 3 2 1 30 30 H 1.08997 * 109.47339 * 194.26716 * 5 4 3 31 31 H 1.09006 * 109.47490 * 314.26726 * 5 4 3 32 32 H 0.96996 * 120.00008 * 179.97438 * 9 8 6 33 33 H 1.07992 * 119.69517 * 359.94666 * 17 16 14 34 34 H 1.09004 * 109.47080 * 90.00194 * 20 19 18 35 35 H 1.08998 * 109.47326 * 210.00016 * 20 19 18 36 36 H 1.09004 * 109.47496 * 330.00076 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9835 1.3378 1.1396 5 6 4.3796 0.9293 0.9660 6 6 5.1293 2.0055 0.2237 7 1 4.6171 2.9041 -0.0871 8 6 6.4693 1.8434 -0.0576 9 7 7.0931 0.7494 0.3214 10 14 7.3987 3.1777 -0.9770 11 1 7.9742 4.1405 -0.0038 12 1 8.4928 2.5621 -1.7702 13 1 6.4680 3.8913 -1.8880 14 6 2.5455 1.7438 2.3479 15 8 1.3785 2.0482 2.5005 16 6 3.4837 1.8186 3.4870 17 6 4.8496 2.0065 3.2704 18 7 5.6860 2.0738 4.2848 19 6 5.2769 1.9687 5.5353 20 6 6.2833 2.0533 6.6539 21 6 3.9398 1.7822 5.8361 22 17 3.4223 1.6470 7.4876 23 6 3.0164 1.7094 4.8035 24 17 1.3271 1.4828 5.1334 25 1 -0.5400 -0.9317 0.0818 26 1 -0.5400 0.9317 -0.0820 27 1 1.8500 -0.9354 0.0004 28 1 1.3578 2.1321 0.0789 29 1 2.6297 1.3977 -0.9267 30 1 4.8374 0.7755 1.9431 31 1 4.4184 0.0007 0.3964 32 1 8.0357 0.6352 0.1231 33 1 5.2238 2.0970 2.2614 34 1 6.3933 3.0920 6.9658 35 1 5.9398 1.4550 7.4977 36 1 7.2446 1.6742 6.3072 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294004448.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:02 Heat of formation + Delta-G solvation = 34.010422 kcal Electronic energy + Delta-G solvation = -23604.653205 eV Core-core repulsion = 19949.477841 eV Total energy + Delta-G solvation = -3655.175364 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.61580 -38.79646 -36.72350 -36.47285 -35.61685 -34.03135 -32.74327 -32.16564 -31.65222 -28.40972 -27.68518 -25.60857 -23.75107 -23.06561 -22.33020 -20.01788 -19.07423 -17.48208 -16.85756 -16.67115 -16.23253 -15.54047 -15.07064 -14.88610 -14.54403 -14.22036 -13.92856 -13.79029 -13.26083 -12.98977 -12.74846 -12.65893 -12.50163 -12.35589 -11.95238 -11.67673 -11.46015 -11.27347 -11.11635 -11.00520 -10.94611 -10.83879 -10.54734 -10.24439 -9.93764 -9.60415 -9.21706 -9.19814 -8.94528 -8.83916 -8.50663 -7.91408 -6.40273 -4.52851 0.76530 1.03340 1.83913 2.21163 2.54196 3.14846 3.19788 3.23165 3.26493 3.74959 3.92382 4.17485 4.37533 4.69690 4.84214 4.92472 5.22675 5.32713 5.34945 5.42157 5.55131 5.58668 5.78544 5.83108 5.97026 6.15226 6.16720 6.30685 6.47010 6.80020 6.92210 6.96557 7.09812 7.27881 7.53246 7.74518 8.04187 8.12510 8.55432 8.76882 9.17785 10.64083 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010367 B = 0.005864 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.305197 B = 4773.931965 C = 7072.312126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.161 4.161 3 C 0.150 3.850 4 N -0.581 5.581 5 C 0.207 3.793 6 C -0.558 4.558 7 H 0.070 0.930 8 C 0.074 3.926 9 N -0.873 5.873 10 Si 0.900 3.100 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.559 3.441 15 O -0.540 6.540 16 C -0.182 4.182 17 C 0.150 3.850 18 N -0.470 5.470 19 C 0.167 3.833 20 C -0.110 4.110 21 C -0.117 4.117 22 Cl -0.046 7.046 23 C 0.059 3.941 24 Cl -0.014 7.014 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.039 0.961 32 H 0.272 0.728 33 H 0.242 0.758 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.492 0.011 8.275 9.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.180 4.180 3 C 0.027 3.973 4 N -0.311 5.311 5 C 0.088 3.912 6 C -0.595 4.595 7 H 0.088 0.912 8 C -0.133 4.133 9 N -0.508 5.508 10 Si 0.726 3.274 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.195 1.195 14 C 0.346 3.654 15 O -0.419 6.419 16 C -0.188 4.188 17 C -0.005 4.005 18 N -0.180 5.180 19 C 0.028 3.972 20 C -0.167 4.167 21 C -0.147 4.147 22 Cl -0.017 7.017 23 C 0.023 3.977 24 Cl 0.016 6.984 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.257 0.743 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.218 0.146 8.345 9.351 hybrid contribution -0.450 0.277 -0.175 0.557 sum -4.668 0.424 8.170 9.419 Atomic orbital electron populations 1.23712 0.95833 1.01373 1.01199 1.23351 0.96128 0.99278 0.99265 1.20383 0.92278 0.94798 0.89819 1.48006 1.12851 1.62919 1.07297 1.20292 0.75269 0.96717 0.98943 1.21431 0.94819 1.04676 1.38592 0.91183 1.25019 0.97455 0.95909 0.94951 1.69913 1.11322 1.25500 1.44051 0.86446 0.79499 0.81475 0.79954 1.19977 1.20819 1.19517 1.17707 0.86679 0.78455 0.82603 1.90753 1.17029 1.50384 1.83740 1.21039 0.96675 1.08573 0.92523 1.25845 0.87299 0.85189 1.02182 1.68038 1.37984 1.14103 0.97868 1.21585 0.90107 0.91360 0.94100 1.20858 0.97786 1.03635 0.94394 1.21551 0.94181 1.12715 0.86223 1.98343 1.90651 1.96540 1.16176 1.21235 0.87310 0.96878 0.92306 1.98410 1.10717 1.94152 1.95129 0.89043 0.88672 0.87600 0.90557 0.88785 0.92522 0.94324 0.91859 0.74306 0.89577 0.90108 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 14.31 29.01 0.42 -2.24 16 2 C -0.16 -2.60 9.81 -36.03 -0.35 -2.96 16 3 C 0.15 2.67 5.71 -5.20 -0.03 2.64 16 4 N -0.58 -11.77 2.50 -177.59 -0.44 -12.21 16 5 C 0.21 4.58 4.65 -5.20 -0.02 4.55 16 6 C -0.56 -13.09 7.24 -34.44 -0.25 -13.34 16 7 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 8 C 0.07 1.77 5.40 -17.82 -0.10 1.67 16 9 N -0.87 -22.06 13.29 55.43 0.74 -21.32 16 10 Si 0.90 19.07 29.54 -169.99 -5.02 14.05 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 13 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 14 C 0.56 11.63 7.35 -12.37 -0.09 11.54 16 15 O -0.54 -11.72 14.40 5.31 0.08 -11.64 16 16 C -0.18 -3.63 5.58 -104.80 -0.58 -4.21 16 17 C 0.15 3.07 8.66 -17.13 -0.15 2.92 16 18 N -0.47 -9.00 10.25 -9.17 -0.09 -9.10 16 19 C 0.17 2.71 6.78 -82.49 -0.56 2.15 16 20 C -0.11 -1.31 9.77 36.00 0.35 -0.96 16 21 C -0.12 -1.89 6.33 -39.38 -0.25 -2.14 16 22 Cl -0.05 -0.61 26.41 -51.86 -1.37 -1.98 16 23 C 0.06 1.07 6.39 -38.70 -0.25 0.82 16 24 Cl -0.01 -0.24 25.72 -51.86 -1.33 -1.57 16 25 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 26 H 0.09 1.34 7.86 -52.49 -0.41 0.93 16 27 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.08 1.35 7.26 -51.93 -0.38 0.97 16 29 H 0.09 1.64 7.86 -51.93 -0.41 1.23 16 30 H 0.06 1.31 3.99 -52.02 -0.21 1.10 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 33 H 0.24 5.38 3.22 -52.49 -0.17 5.21 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.84 6.87 -51.93 -0.36 0.48 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -25.78 335.15 -7.85 -33.63 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -3.59 Total: 4.64 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.87 Total: 0.46 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.20 Total: -42.63 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -2.70 Total: -3.55 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -25.78 -7.85 -33.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294004448.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.642 kcal (2) G-P(sol) polarization free energy of solvation -25.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds