Wall clock time and date at job start Tue Mar 31 2020 14:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50692 * 119.99990 * 2 1 4 4 N 1.46503 * 109.47468 * 124.40194 * 3 2 1 5 5 C 1.46493 * 120.00071 * 94.79806 * 4 3 2 6 6 C 1.50701 * 109.47154 * 74.26656 * 5 4 3 7 7 H 1.08001 * 119.99773 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00093 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99908 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47414 * 89.99999 * 10 8 6 12 12 H 1.48501 * 109.47441 * 210.00281 * 10 8 6 13 13 H 1.48504 * 109.47374 * 330.00080 * 10 8 6 14 14 C 1.34775 * 119.99987 * 274.80283 * 4 3 2 15 15 O 1.21565 * 120.00003 * 1.98835 * 14 4 3 16 16 C 1.47765 * 120.00270 * 181.97974 * 14 4 3 17 17 C 1.39570 * 120.56441 * 25.87054 * 16 14 4 18 18 N 1.31653 * 120.60227 * 179.97438 * 17 16 14 19 19 C 1.31995 * 121.93792 * 359.97438 * 18 17 16 20 20 C 1.50697 * 119.45404 * 179.97438 * 19 18 17 21 21 C 1.38316 * 121.08914 * 359.97438 * 19 18 17 22 22 Cl 1.73594 * 120.36592 * 180.02562 * 21 19 18 23 23 C 1.38713 * 119.26069 * 359.78427 * 21 19 18 24 24 Cl 1.73603 * 120.87585 * 180.25578 * 23 21 19 25 25 H 1.07999 * 120.00214 * 185.01920 * 1 2 3 26 26 H 1.07998 * 119.99874 * 5.02970 * 1 2 3 27 27 H 1.08002 * 119.99616 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47442 * 4.40474 * 3 2 1 29 29 H 1.08995 * 109.47432 * 244.40116 * 3 2 1 30 30 H 1.08997 * 109.47339 * 194.26716 * 5 4 3 31 31 H 1.09006 * 109.47490 * 314.26726 * 5 4 3 32 32 H 0.96996 * 120.00008 * 179.97438 * 9 8 6 33 33 H 1.07992 * 119.69517 * 359.94666 * 17 16 14 34 34 H 1.09004 * 109.47080 * 90.00194 * 20 19 18 35 35 H 1.08998 * 109.47326 * 210.00016 * 20 19 18 36 36 H 1.09004 * 109.47496 * 330.00076 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9835 1.3378 1.1396 5 6 4.3796 0.9293 0.9660 6 6 5.1293 2.0055 0.2237 7 1 4.6171 2.9041 -0.0871 8 6 6.4693 1.8434 -0.0576 9 7 7.0931 0.7494 0.3214 10 14 7.3987 3.1777 -0.9770 11 1 7.9742 4.1405 -0.0038 12 1 8.4928 2.5621 -1.7702 13 1 6.4680 3.8913 -1.8880 14 6 2.5455 1.7438 2.3479 15 8 1.3785 2.0482 2.5005 16 6 3.4837 1.8186 3.4870 17 6 4.8496 2.0065 3.2704 18 7 5.6860 2.0738 4.2848 19 6 5.2769 1.9687 5.5353 20 6 6.2833 2.0533 6.6539 21 6 3.9398 1.7822 5.8361 22 17 3.4223 1.6470 7.4876 23 6 3.0164 1.7094 4.8035 24 17 1.3271 1.4828 5.1334 25 1 -0.5400 -0.9317 0.0818 26 1 -0.5400 0.9317 -0.0820 27 1 1.8500 -0.9354 0.0004 28 1 1.3578 2.1321 0.0789 29 1 2.6297 1.3977 -0.9267 30 1 4.8374 0.7755 1.9431 31 1 4.4184 0.0007 0.3964 32 1 8.0357 0.6352 0.1231 33 1 5.2238 2.0970 2.2614 34 1 6.3933 3.0920 6.9658 35 1 5.9398 1.4550 7.4977 36 1 7.2446 1.6742 6.3072 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294004448.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:01 Heat of formation + Delta-G solvation = 21.569789 kcal Electronic energy + Delta-G solvation = -23605.192672 eV Core-core repulsion = 19949.477841 eV Total energy + Delta-G solvation = -3655.714831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.08408 -40.31257 -38.06572 -37.76310 -37.21124 -35.50116 -34.34960 -33.59447 -33.03130 -29.75823 -29.35291 -26.99497 -25.36840 -24.65650 -23.70852 -21.41437 -20.50487 -18.95406 -18.63122 -18.22722 -17.62568 -17.06639 -16.57220 -16.40654 -16.02416 -15.72088 -15.28568 -15.24612 -14.70230 -14.35833 -14.25906 -14.12365 -13.86407 -13.40036 -13.24949 -13.05212 -12.93780 -12.86157 -12.67492 -12.38050 -12.36064 -12.24229 -12.05955 -11.86376 -11.69172 -11.11647 -10.71893 -10.62699 -10.59761 -10.24596 -9.94363 -9.55357 -8.25267 -6.42745 -0.65341 -0.38375 0.51797 0.85739 1.27450 1.45411 1.48772 1.56427 1.68771 2.24555 2.38000 2.47236 3.01419 3.10792 3.35889 3.39158 3.78771 3.97444 4.04574 4.07103 4.24765 4.49586 4.58396 4.69506 4.75194 4.76689 4.82614 5.02813 5.08511 5.16837 5.32565 5.58824 5.66694 5.69223 5.86066 5.92701 6.45276 6.62945 6.72128 7.12669 7.31477 8.78949 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010367 B = 0.005864 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.305197 B = 4773.931965 C = 7072.312126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.184 4.184 3 C 0.148 3.852 4 N -0.583 5.583 5 C 0.222 3.778 6 C -0.557 4.557 7 H 0.064 0.936 8 C 0.036 3.964 9 N -0.902 5.902 10 Si 0.953 3.047 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.268 1.268 14 C 0.556 3.444 15 O -0.553 6.553 16 C -0.201 4.201 17 C 0.140 3.860 18 N -0.489 5.489 19 C 0.171 3.829 20 C -0.108 4.108 21 C -0.112 4.112 22 Cl -0.013 7.013 23 C 0.052 3.948 24 Cl -0.007 7.007 25 H 0.114 0.886 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.020 0.980 32 H 0.272 0.728 33 H 0.219 0.781 34 H 0.108 0.892 35 H 0.101 0.899 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.795 0.358 9.724 10.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.203 4.203 3 C 0.026 3.974 4 N -0.312 5.312 5 C 0.101 3.899 6 C -0.595 4.595 7 H 0.083 0.917 8 C -0.168 4.168 9 N -0.538 5.538 10 Si 0.778 3.222 11 H -0.199 1.199 12 H -0.206 1.206 13 H -0.192 1.192 14 C 0.344 3.656 15 O -0.434 6.434 16 C -0.207 4.207 17 C -0.016 4.016 18 N -0.199 5.199 19 C 0.032 3.968 20 C -0.165 4.165 21 C -0.142 4.142 22 Cl 0.016 6.984 23 C 0.016 3.984 24 Cl 0.022 6.978 25 H 0.132 0.868 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.235 0.765 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.538 0.494 9.784 10.796 hybrid contribution -0.434 0.163 -0.473 0.662 sum -4.972 0.657 9.311 10.576 Atomic orbital electron populations 1.23939 0.95165 1.02679 0.98149 1.23214 0.96760 0.98233 1.02064 1.20473 0.92012 0.95969 0.88902 1.48029 1.12476 1.62675 1.07984 1.19992 0.76217 0.95527 0.98116 1.21529 0.95050 1.04611 1.38318 0.91747 1.25619 0.98125 0.97429 0.95592 1.69994 1.11529 1.26965 1.45331 0.85612 0.78375 0.79303 0.78865 1.19949 1.20606 1.19197 1.17880 0.86738 0.78139 0.82879 1.90722 1.17473 1.51214 1.83990 1.20947 0.96339 1.10317 0.93101 1.25367 0.87729 0.86582 1.01889 1.68017 1.38125 1.14890 0.98851 1.22245 0.91147 0.89393 0.94026 1.21043 0.96749 1.05449 0.93253 1.21646 0.93901 1.11149 0.87500 1.98356 1.90395 1.96255 1.13367 1.21359 0.87987 0.96851 0.92232 1.98405 1.10277 1.94087 1.94981 0.86769 0.88169 0.87801 0.90529 0.89095 0.93142 0.96158 0.91850 0.76524 0.87358 0.88094 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 14.31 67.78 0.97 -3.47 16 2 C -0.18 -5.91 9.81 25.64 0.25 -5.66 16 3 C 0.15 5.38 5.71 85.63 0.49 5.87 16 4 N -0.58 -24.22 2.50 -834.03 -2.08 -26.31 16 5 C 0.22 10.16 4.65 85.63 0.40 10.56 16 6 C -0.56 -26.85 7.24 25.60 0.19 -26.66 16 7 H 0.06 3.12 7.81 -2.91 -0.02 3.09 16 8 C 0.04 1.77 5.40 84.66 0.46 2.23 16 9 N -0.90 -46.50 13.29 21.45 0.28 -46.21 16 10 Si 0.95 39.35 29.54 68.60 2.03 41.38 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 12 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 13 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 14 C 0.56 23.51 7.35 86.76 0.64 24.14 16 15 O -0.55 -24.05 14.40 -3.92 -0.06 -24.11 16 16 C -0.20 -8.10 5.58 -19.98 -0.11 -8.22 16 17 C 0.14 5.84 8.66 85.04 0.74 6.57 16 18 N -0.49 -18.63 10.25 -182.92 -1.88 -20.50 16 19 C 0.17 5.27 6.78 42.55 0.29 5.56 16 20 C -0.11 -2.28 9.77 71.23 0.70 -1.58 16 21 C -0.11 -3.44 6.33 22.40 0.14 -3.30 16 22 Cl -0.01 -0.30 26.41 -2.72 -0.07 -0.37 16 23 C 0.05 1.85 6.39 22.84 0.15 2.00 16 24 Cl -0.01 -0.24 25.72 -2.72 -0.07 -0.31 16 25 H 0.11 2.62 8.06 -2.91 -0.02 2.60 16 26 H 0.10 2.66 7.86 -2.91 -0.02 2.64 16 27 H 0.10 3.36 8.06 -2.91 -0.02 3.33 16 28 H 0.08 2.74 7.26 -2.38 -0.02 2.72 16 29 H 0.09 3.27 7.86 -2.39 -0.02 3.26 16 30 H 0.05 2.44 3.99 -2.47 -0.01 2.43 16 31 H 0.02 0.99 8.14 -2.38 -0.02 0.98 16 32 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 33 H 0.22 10.12 3.22 -2.91 -0.01 10.11 16 34 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.10 1.73 6.87 -2.39 -0.02 1.71 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -55.10 335.15 4.57 -50.53 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 1.13 Total: 17.86 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 5.29 Total: 8.04 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -3.67 Total: -93.02 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.06 Total: -24.11 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.14 Total: -0.68 kcal Total: -55.10 4.57 -50.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294004448.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.104 kcal (2) G-P(sol) polarization free energy of solvation -55.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds