Wall clock time and date at job start Tue Mar 31 2020 14:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 119.99603 * 2 1 4 4 H 1.48502 * 109.47147 * 239.99963 * 3 2 1 5 5 H 1.48494 * 109.47361 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46852 * 120.00416 * 3 2 1 7 7 C 1.38813 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00194 * 205.46626 * 7 2 1 9 9 N 1.36937 * 119.99902 * 25.47126 * 7 2 1 10 10 C 1.46500 * 120.00180 * 9.44483 * 9 7 2 11 11 C 1.50697 * 109.47301 * 270.00132 * 10 9 7 12 12 O 1.21294 * 119.99799 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00311 * 180.02562 * 11 10 9 14 14 C 1.39970 * 120.00166 * 185.16781 * 13 11 10 15 15 C 1.38890 * 120.05140 * 32.77215 * 14 13 11 16 16 C 1.38099 * 119.96795 * 179.97438 * 15 14 13 17 17 C 1.38383 * 120.06983 * 359.97438 * 16 15 14 18 18 Cl 1.73595 * 119.94639 * 180.02562 * 17 16 15 19 19 C 1.38477 * 120.09928 * 0.03847 * 17 16 15 20 20 Cl 1.73599 * 119.97784 * 179.97438 * 19 17 16 21 21 C 1.38236 * 120.03687 * 359.70830 * 19 17 16 22 22 C 1.46501 * 119.99858 * 189.44848 * 9 7 2 23 23 C 1.53002 * 117.49765 * 12.64527 * 22 9 7 24 24 C 1.53000 * 117.49735 * 303.98443 * 22 9 7 25 25 H 0.96993 * 119.99883 * 5.00376 * 1 2 3 26 26 H 1.08994 * 109.47238 * 150.00041 * 10 9 7 27 27 H 1.09000 * 109.47132 * 30.00267 * 10 9 7 28 28 H 0.96999 * 119.99597 * 5.44093 * 13 11 10 29 29 H 1.08002 * 120.01325 * 0.02562 * 15 14 13 30 30 H 1.07997 * 119.96594 * 180.02562 * 16 15 14 31 31 H 1.07997 * 120.03932 * 180.27122 * 21 19 17 32 32 H 1.08999 * 115.54970 * 158.32333 * 22 9 7 33 33 H 1.08999 * 117.49967 * 359.97438 * 23 22 9 34 34 H 1.08998 * 117.49676 * 145.02584 * 23 22 9 35 35 H 1.08993 * 117.50410 * 214.98130 * 24 22 9 36 36 H 1.09006 * 117.49857 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0116 -1.2478 0.4016 9 7 1.4255 -2.3302 -0.5111 10 6 0.1590 -2.2325 -1.2409 11 6 -0.9893 -2.3787 -0.2761 12 8 -0.7713 -2.5473 0.9051 13 7 -2.2586 -2.3220 -0.7257 14 6 -3.3243 -2.3490 0.1815 15 6 -3.1832 -1.7733 1.4375 16 6 -4.2359 -1.8005 2.3310 17 6 -5.4314 -2.4003 1.9759 18 17 -6.7528 -2.4320 3.1013 19 6 -5.5751 -2.9754 0.7244 20 17 -7.0760 -3.7275 0.2826 21 6 -4.5259 -2.9460 -0.1752 22 6 2.0663 -3.6347 -0.3273 23 6 3.2134 -3.7225 0.6813 24 6 3.5066 -3.7899 -0.8196 25 1 -0.4849 0.8368 -0.0733 26 1 0.1085 -3.0241 -1.9884 27 1 0.0979 -1.2625 -1.7343 28 1 -2.4337 -2.2665 -1.6781 29 1 -2.2510 -1.3039 1.7151 30 1 -4.1263 -1.3525 3.3075 31 1 -4.6393 -3.3906 -1.1528 32 1 1.4079 -4.4987 -0.4173 33 1 3.4916 -2.8096 1.2079 34 1 3.3100 -4.6445 1.2547 35 1 3.7960 -4.7560 -1.2329 36 1 3.9773 -2.9214 -1.2806 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299550686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:12 Heat of formation + Delta-G solvation = 39.966655 kcal Electronic energy + Delta-G solvation = -23143.477417 eV Core-core repulsion = 19488.560334 eV Total energy + Delta-G solvation = -3654.917083 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.91816 -38.24374 -37.00048 -36.42548 -36.21156 -33.89669 -33.48777 -30.73089 -30.67646 -29.24081 -26.66389 -24.05561 -22.93290 -22.25030 -21.51643 -20.14295 -19.64615 -17.77249 -16.79450 -16.27267 -16.11000 -15.84274 -15.18138 -14.54555 -14.45756 -14.05167 -13.89742 -13.71807 -13.36677 -13.09256 -12.50087 -12.28974 -12.04782 -11.81366 -11.75348 -11.40995 -11.30783 -10.96796 -10.92145 -10.78372 -10.75884 -10.61159 -10.43712 -10.14666 -9.91357 -9.59759 -9.50515 -8.88261 -8.68214 -8.43487 -7.65901 -7.04428 -6.02082 -3.28235 1.21742 1.29263 1.94080 2.32506 3.31151 3.38323 3.39796 3.53344 3.74905 4.10223 4.38495 4.76929 4.78559 5.02581 5.25806 5.31506 5.35382 5.48168 5.75071 5.77056 5.86188 5.93414 6.02524 6.03385 6.31611 6.34721 6.37532 6.43732 6.62842 6.73968 6.78796 6.90078 6.98600 7.31251 7.64281 8.01586 8.18537 8.95301 9.30148 9.63164 10.04070 11.07155 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017030 B = 0.003348 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.755582 B = 8361.821558 C = 9074.490975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.247 4.247 8 H 0.083 0.917 9 N -0.538 5.538 10 C 0.167 3.833 11 C 0.525 3.475 12 O -0.500 6.500 13 N -0.687 5.687 14 C 0.199 3.801 15 C -0.102 4.102 16 C -0.081 4.081 17 C -0.064 4.064 18 Cl -0.069 7.069 19 C -0.010 4.010 20 Cl -0.063 7.063 21 C -0.152 4.152 22 C 0.129 3.871 23 C -0.199 4.199 24 C -0.221 4.221 25 H 0.256 0.744 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.402 0.598 29 H 0.163 0.837 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.566 -5.653 -2.621 11.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.375 4.375 8 H 0.101 0.899 9 N -0.253 5.253 10 C 0.036 3.964 11 C 0.313 3.687 12 O -0.371 6.371 13 N -0.333 5.333 14 C 0.100 3.900 15 C -0.123 4.123 16 C -0.100 4.100 17 C -0.093 4.093 18 Cl -0.040 7.040 19 C -0.038 4.038 20 Cl -0.034 7.034 21 C -0.174 4.174 22 C 0.019 3.981 23 C -0.238 4.238 24 C -0.261 4.261 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.126 0.874 28 H 0.236 0.764 29 H 0.181 0.819 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.607 -5.643 -1.652 11.264 hybrid contribution -0.036 0.966 -0.207 0.988 sum -9.643 -4.678 -1.859 10.878 Atomic orbital electron populations 1.69890 1.05029 1.26114 1.53402 1.24634 0.95160 0.98173 1.01449 0.86356 0.79110 0.83304 0.78121 1.21138 1.21685 1.21013 1.19266 0.97327 0.85417 1.35484 0.89909 1.43526 1.19656 1.01658 1.60437 1.20745 0.82927 1.01624 0.91116 1.22589 0.82056 0.72232 0.91821 1.90551 1.83360 1.45437 1.17733 1.44281 1.05254 1.74883 1.08842 1.17819 0.87398 0.93102 0.91634 1.21586 1.00126 0.97868 0.92676 1.20940 0.90266 0.98293 1.00526 1.20587 0.91250 1.06558 0.90861 1.98345 1.47100 1.97543 1.60989 1.20311 0.88783 1.01026 0.93666 1.98357 1.31728 1.80562 1.92779 1.20650 0.92268 1.03832 1.00629 1.20921 0.87416 0.88863 1.00878 1.23139 1.06587 1.02053 0.92033 1.23429 1.04501 1.01235 0.96972 0.93405 0.93546 0.87367 0.76352 0.81907 0.84341 0.84350 0.89187 0.88458 0.90513 0.90570 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.71 8.95 55.49 0.50 -22.21 16 2 C 0.00 0.08 4.87 -17.43 -0.08 -0.01 16 3 Si 0.90 20.44 29.63 -169.99 -5.04 15.40 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.25 -6.19 9.01 -15.06 -0.14 -6.33 16 8 H 0.08 2.09 6.13 -52.49 -0.32 1.77 16 9 N -0.54 -12.20 2.37 -167.03 -0.40 -12.60 16 10 C 0.17 3.38 5.48 -5.20 -0.03 3.35 16 11 C 0.53 10.80 5.61 -10.99 -0.06 10.74 16 12 O -0.50 -12.31 13.73 5.55 0.08 -12.24 16 13 N -0.69 -11.30 5.35 -9.86 -0.05 -11.35 16 14 C 0.20 3.27 6.29 -83.68 -0.53 2.74 16 15 C -0.10 -1.82 8.66 -39.39 -0.34 -2.16 16 16 C -0.08 -1.25 9.82 -39.58 -0.39 -1.63 16 17 C -0.06 -0.94 6.32 -39.44 -0.25 -1.19 16 18 Cl -0.07 -0.90 27.95 -51.86 -1.45 -2.35 16 19 C -0.01 -0.14 6.32 -39.49 -0.25 -0.39 16 20 Cl -0.06 -0.79 27.95 -51.86 -1.45 -2.24 16 21 C -0.15 -2.11 9.74 -39.36 -0.38 -2.50 16 22 C 0.13 2.57 6.60 -67.93 -0.45 2.12 16 23 C -0.20 -3.76 9.78 -26.69 -0.26 -4.02 16 24 C -0.22 -3.87 10.19 -26.69 -0.27 -4.14 16 25 H 0.26 6.44 8.32 -40.82 -0.34 6.10 16 26 H 0.05 0.78 8.07 -51.93 -0.42 0.36 16 27 H 0.11 2.33 6.39 -51.93 -0.33 2.00 16 28 H 0.40 5.17 8.82 -40.82 -0.36 4.81 16 29 H 0.16 3.51 6.37 -52.49 -0.33 3.18 16 30 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 31 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 33 H 0.10 2.02 6.33 -51.93 -0.33 1.69 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 335.03 15.07 5.05 5.05 Total: -1.00 -27.84 335.03 -9.96 -37.80 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -3.77 Total: 8.17 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -3.43 Total: -3.43 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.05 Total: -46.16 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.04 Total: 15.40 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -2.90 Total: -4.59 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.84 -9.96 -37.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299550686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.762 kcal (2) G-P(sol) polarization free energy of solvation -27.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds