Wall clock time and date at job start Tue Mar 31 2020 14:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 119.99603 * 2 1 4 4 H 1.48502 * 109.47147 * 239.99963 * 3 2 1 5 5 H 1.48494 * 109.47361 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46852 * 120.00416 * 3 2 1 7 7 C 1.38813 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00194 * 205.46626 * 7 2 1 9 9 N 1.36937 * 119.99902 * 25.47126 * 7 2 1 10 10 C 1.46500 * 120.00180 * 9.44483 * 9 7 2 11 11 C 1.50697 * 109.47301 * 270.00132 * 10 9 7 12 12 O 1.21294 * 119.99799 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00311 * 180.02562 * 11 10 9 14 14 C 1.39970 * 120.00166 * 185.16781 * 13 11 10 15 15 C 1.38890 * 120.05140 * 32.77215 * 14 13 11 16 16 C 1.38099 * 119.96795 * 179.97438 * 15 14 13 17 17 C 1.38383 * 120.06983 * 359.97438 * 16 15 14 18 18 Cl 1.73595 * 119.94639 * 180.02562 * 17 16 15 19 19 C 1.38477 * 120.09928 * 0.03847 * 17 16 15 20 20 Cl 1.73599 * 119.97784 * 179.97438 * 19 17 16 21 21 C 1.38236 * 120.03687 * 359.70830 * 19 17 16 22 22 C 1.46501 * 119.99858 * 189.44848 * 9 7 2 23 23 C 1.53002 * 117.49765 * 12.64527 * 22 9 7 24 24 C 1.53000 * 117.49735 * 303.98443 * 22 9 7 25 25 H 0.96993 * 119.99883 * 5.00376 * 1 2 3 26 26 H 1.08994 * 109.47238 * 150.00041 * 10 9 7 27 27 H 1.09000 * 109.47132 * 30.00267 * 10 9 7 28 28 H 0.96999 * 119.99597 * 5.44093 * 13 11 10 29 29 H 1.08002 * 120.01325 * 0.02562 * 15 14 13 30 30 H 1.07997 * 119.96594 * 180.02562 * 16 15 14 31 31 H 1.07997 * 120.03932 * 180.27122 * 21 19 17 32 32 H 1.08999 * 115.54970 * 158.32333 * 22 9 7 33 33 H 1.08999 * 117.49967 * 359.97438 * 23 22 9 34 34 H 1.08998 * 117.49676 * 145.02584 * 23 22 9 35 35 H 1.08993 * 117.50410 * 214.98130 * 24 22 9 36 36 H 1.09006 * 117.49857 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0116 -1.2478 0.4016 9 7 1.4255 -2.3302 -0.5111 10 6 0.1590 -2.2325 -1.2409 11 6 -0.9893 -2.3787 -0.2761 12 8 -0.7713 -2.5473 0.9051 13 7 -2.2586 -2.3220 -0.7257 14 6 -3.3243 -2.3490 0.1815 15 6 -3.1832 -1.7733 1.4375 16 6 -4.2359 -1.8005 2.3310 17 6 -5.4314 -2.4003 1.9759 18 17 -6.7528 -2.4320 3.1013 19 6 -5.5751 -2.9754 0.7244 20 17 -7.0760 -3.7275 0.2826 21 6 -4.5259 -2.9460 -0.1752 22 6 2.0663 -3.6347 -0.3273 23 6 3.2134 -3.7225 0.6813 24 6 3.5066 -3.7899 -0.8196 25 1 -0.4849 0.8368 -0.0733 26 1 0.1085 -3.0241 -1.9884 27 1 0.0979 -1.2625 -1.7343 28 1 -2.4337 -2.2665 -1.6781 29 1 -2.2510 -1.3039 1.7151 30 1 -4.1263 -1.3525 3.3075 31 1 -4.6393 -3.3906 -1.1528 32 1 1.4079 -4.4987 -0.4173 33 1 3.4916 -2.8096 1.2079 34 1 3.3100 -4.6445 1.2547 35 1 3.7960 -4.7560 -1.2329 36 1 3.9773 -2.9214 -1.2806 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299550686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:12 Heat of formation + Delta-G solvation = 25.964433 kcal Electronic energy + Delta-G solvation = -23144.084599 eV Core-core repulsion = 19488.560334 eV Total energy + Delta-G solvation = -3655.524265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.27622 -39.66489 -38.48303 -37.51830 -37.43922 -35.36803 -35.14598 -32.45613 -31.91939 -30.60470 -28.29834 -25.75786 -24.17671 -23.55419 -22.97437 -21.73517 -21.16986 -19.12560 -18.31419 -17.76685 -17.53905 -17.42288 -16.49017 -16.10999 -15.86972 -15.75227 -15.17804 -14.94139 -14.72629 -14.68805 -14.14758 -13.70406 -13.47493 -13.16479 -13.02494 -12.87453 -12.68951 -12.57848 -12.39391 -12.23381 -12.09542 -12.02662 -11.89169 -11.87200 -11.68371 -11.00620 -10.94033 -10.43909 -10.26670 -9.91461 -8.95998 -8.77700 -7.89748 -5.16097 -0.02372 0.09411 0.81913 1.16689 1.47761 1.51557 1.56616 2.12833 2.40121 2.56201 2.72031 3.13427 3.43013 3.50141 3.65328 4.09210 4.12995 4.18651 4.27224 4.43361 4.50436 4.53868 4.63768 4.72119 4.92257 4.93085 4.99291 5.07444 5.21526 5.30106 5.33159 5.42133 5.51249 5.71174 5.96583 6.24543 6.79306 7.12676 7.73344 7.90320 8.22224 9.15272 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.017030 B = 0.003348 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.755582 B = 8361.821558 C = 9074.490975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.038 4.038 3 Si 0.951 3.049 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.292 1.292 7 C -0.253 4.253 8 H 0.072 0.928 9 N -0.555 5.555 10 C 0.165 3.835 11 C 0.529 3.471 12 O -0.548 6.548 13 N -0.674 5.674 14 C 0.183 3.817 15 C -0.123 4.123 16 C -0.080 4.080 17 C -0.064 4.064 18 Cl -0.053 7.053 19 C -0.012 4.012 20 Cl -0.042 7.042 21 C -0.133 4.133 22 C 0.105 3.895 23 C -0.206 4.206 24 C -0.192 4.192 25 H 0.247 0.753 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.420 0.580 29 H 0.121 0.879 30 H 0.148 0.852 31 H 0.170 0.830 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.748 -7.127 -3.863 13.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.233 4.233 3 Si 0.781 3.219 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.219 1.219 7 C -0.382 4.382 8 H 0.090 0.910 9 N -0.271 5.271 10 C 0.034 3.966 11 C 0.318 3.682 12 O -0.422 6.422 13 N -0.321 5.321 14 C 0.085 3.915 15 C -0.144 4.144 16 C -0.100 4.100 17 C -0.093 4.093 18 Cl -0.024 7.024 19 C -0.040 4.040 20 Cl -0.013 7.013 21 C -0.155 4.155 22 C -0.003 4.003 23 C -0.244 4.244 24 C -0.232 4.232 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.258 0.742 29 H 0.139 0.861 30 H 0.166 0.834 31 H 0.187 0.813 32 H 0.122 0.878 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.814 -7.134 -2.936 13.284 hybrid contribution 0.228 1.348 0.219 1.384 sum -10.587 -5.786 -2.717 12.367 Atomic orbital electron populations 1.70033 1.05380 1.25663 1.54264 1.25143 0.95863 0.99986 1.02345 0.85590 0.77850 0.80772 0.77663 1.20594 1.22334 1.21896 1.19359 0.97071 0.86754 1.35050 0.90993 1.43657 1.20711 1.02032 1.60676 1.20786 0.82190 1.02133 0.91447 1.22503 0.83284 0.71432 0.91005 1.90532 1.84349 1.47810 1.19518 1.43887 1.04284 1.74083 1.09869 1.17886 0.88235 0.94137 0.91199 1.21288 0.99320 0.99491 0.94337 1.20954 0.90121 0.98332 1.00566 1.20645 0.91277 1.05921 0.91448 1.98351 1.46090 1.97441 1.60527 1.20446 0.89644 1.00505 0.93407 1.98369 1.30290 1.80063 1.92573 1.20831 0.90722 1.02245 1.01675 1.21214 0.88464 0.88255 1.02363 1.23134 1.06411 1.01864 0.93041 1.23382 1.01873 1.02380 0.95558 0.94288 0.89773 0.88946 0.74244 0.86103 0.83414 0.81271 0.87763 0.91184 0.88295 0.87098 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.21 8.95 21.65 0.19 -47.02 16 2 C -0.04 -1.95 4.87 84.86 0.41 -1.53 16 3 Si 0.95 43.10 29.63 68.60 2.03 45.13 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.25 -12.98 9.01 84.03 0.76 -12.22 16 8 H 0.07 3.76 6.13 -2.91 -0.02 3.74 16 9 N -0.56 -25.29 2.37 -682.35 -1.62 -26.91 16 10 C 0.16 6.63 5.48 85.63 0.47 7.10 16 11 C 0.53 21.94 5.61 87.66 0.49 22.44 16 12 O -0.55 -27.81 13.73 -3.07 -0.04 -27.85 16 13 N -0.67 -21.83 5.35 -303.49 -1.62 -23.45 16 14 C 0.18 5.93 6.29 38.14 0.24 6.17 16 15 C -0.12 -4.54 8.66 22.39 0.19 -4.34 16 16 C -0.08 -2.48 9.82 22.27 0.22 -2.26 16 17 C -0.06 -1.79 6.32 22.36 0.14 -1.65 16 18 Cl -0.05 -1.30 27.95 -2.72 -0.08 -1.38 16 19 C -0.01 -0.31 6.32 22.33 0.14 -0.17 16 20 Cl -0.04 -0.93 27.95 -2.72 -0.08 -1.01 16 21 C -0.13 -3.41 9.74 22.41 0.22 -3.19 16 22 C 0.11 4.10 6.60 44.99 0.30 4.40 16 23 C -0.21 -7.64 9.78 30.62 0.30 -7.34 16 24 C -0.19 -6.36 10.19 30.62 0.31 -6.05 16 25 H 0.25 12.88 8.32 -92.71 -0.77 12.11 16 26 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 27 H 0.09 4.01 6.39 -2.39 -0.02 3.99 16 28 H 0.42 10.18 8.82 -92.71 -0.82 9.36 16 29 H 0.12 5.57 6.37 -2.91 -0.02 5.55 16 30 H 0.15 4.13 8.06 -2.91 -0.02 4.10 16 31 H 0.17 3.24 8.06 -2.91 -0.02 3.21 16 32 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 33 H 0.07 2.98 6.33 -2.39 -0.02 2.97 16 34 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 Total: -1.00 -61.55 335.03 3.30 -58.24 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.32 Total: 22.91 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 4.19 Total: 1.34 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -3.05 Total: -97.38 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.04 Total: -27.85 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -0.15 Total: -2.38 kcal Total: -61.55 3.30 -58.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299550686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.208 kcal (2) G-P(sol) polarization free energy of solvation -61.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds