Wall clock time and date at job start Tue Mar 31 2020 15:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43190 * 179.97438 * 2 1 4 4 C 1.39659 * 120.15018 * 166.30037 * 3 2 1 5 5 C 1.37922 * 119.84835 * 180.02562 * 4 3 2 6 6 C 1.38393 * 120.15062 * 359.97336 * 5 4 3 7 7 C 1.38344 * 120.30328 * 0.02987 * 6 5 4 8 8 C 1.37959 * 120.15418 * 359.97438 * 7 6 5 9 9 S 1.76196 * 120.07820 * 180.02562 * 8 7 6 10 10 O 1.42099 * 106.40200 * 228.52469 * 9 8 7 11 11 O 1.42096 * 106.40393 * 1.44529 * 9 8 7 12 12 N 1.65600 * 107.21939 * 114.98555 * 9 8 7 13 13 C 1.39688 * 120.00097 * 298.54304 * 12 9 8 14 14 C 1.39338 * 119.95041 * 313.90328 * 13 12 9 15 15 C 1.38470 * 120.42225 * 179.72067 * 14 13 12 16 16 C 1.37684 * 120.32625 * 0.55108 * 15 14 13 17 17 C 1.40746 * 119.89198 * 359.72688 * 16 15 14 18 18 C 1.41411 * 120.20971 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00872 * 209.00767 * 18 17 16 20 20 C 1.39938 * 119.99545 * 29.01335 * 18 17 16 21 21 N 1.30831 * 120.00128 * 10.70441 * 20 18 17 22 22 Si 1.86800 * 119.99677 * 190.70473 * 20 18 17 23 23 H 1.48497 * 109.47331 * 90.00289 * 22 20 18 24 24 H 1.48507 * 109.47060 * 210.00011 * 22 20 18 25 25 H 1.48497 * 109.47317 * 330.00064 * 22 20 18 26 26 C 1.38272 * 119.95141 * 134.17540 * 13 12 9 27 27 H 1.08000 * 120.07350 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.92438 * 180.02562 * 5 4 3 29 29 H 1.07995 * 119.84574 * 179.74940 * 6 5 4 30 30 H 1.08000 * 119.91768 * 179.97438 * 7 6 5 31 31 H 0.97003 * 120.00285 * 118.54876 * 12 9 8 32 32 H 1.08002 * 119.78554 * 0.02562 * 14 13 12 33 33 H 1.08004 * 119.83552 * 180.27990 * 15 14 13 34 34 H 1.08002 * 120.05745 * 179.74619 * 16 15 14 35 35 H 0.96998 * 119.99618 * 180.02562 * 21 20 18 36 36 H 1.08001 * 120.16513 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 1.1742 -0.2860 5 6 4.6481 1.1677 -0.2848 6 6 5.3374 0.0018 -0.0005 7 6 4.6494 -1.1643 0.2836 8 6 3.2698 -1.1720 0.2858 9 16 2.3956 -2.6581 0.6486 10 8 1.4125 -2.8034 -0.3671 11 8 3.3796 -3.6454 0.9246 12 7 1.5726 -2.4097 2.0639 13 6 2.2731 -2.1256 3.2386 14 6 3.3927 -2.8811 3.5809 15 6 4.0978 -2.6042 4.7401 16 6 3.6930 -1.5857 5.5734 17 6 2.5606 -0.8177 5.2437 18 6 2.1393 0.2304 6.0945 19 1 1.0954 0.5035 6.1388 20 6 3.0752 0.9137 6.8789 21 7 4.3551 0.7327 6.6767 22 14 2.4971 2.0845 8.2148 23 1 2.3405 1.3411 9.4908 24 1 3.4986 3.1666 8.3921 25 1 1.1926 2.6765 7.8236 26 6 1.8511 -1.0986 4.0628 27 1 2.7322 2.0848 -0.5076 28 1 5.1914 2.0746 -0.5054 29 1 6.4174 0.0013 -0.0049 30 1 5.1936 -2.0707 0.5042 31 1 0.6041 -2.4615 2.0774 32 1 3.7155 -3.6846 2.9355 33 1 4.9669 -3.1930 4.9940 34 1 4.2438 -1.3761 6.4785 35 1 5.0037 1.2061 7.2208 36 1 0.9811 -0.5149 3.8005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313464169.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:31 Heat of formation + Delta-G solvation = 8.908649 kcal Electronic energy + Delta-G solvation = -25058.729191 eV Core-core repulsion = 21406.941888 eV Total energy + Delta-G solvation = -3651.787303 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.53878 -38.10301 -37.19225 -36.34648 -35.76048 -34.80235 -32.98111 -31.68903 -31.46982 -29.94081 -27.80977 -25.34721 -24.29992 -23.37309 -21.19211 -21.04895 -19.77159 -19.00303 -17.88013 -17.40517 -17.11460 -16.14517 -15.55977 -15.29044 -15.18481 -14.69874 -14.62556 -14.45278 -14.18055 -13.55965 -13.30871 -13.08175 -12.93663 -12.61158 -12.53925 -12.46063 -12.19060 -11.98013 -11.92683 -11.67585 -11.59082 -11.44129 -11.17677 -11.05156 -10.80980 -10.45487 -10.01962 -9.83954 -9.59020 -9.39551 -9.23145 -9.15191 -7.58401 -7.21858 -6.78895 -4.48576 0.25254 0.53922 0.92002 2.50517 2.68569 2.79052 2.80166 3.02981 3.05100 3.08055 3.13240 3.51768 3.61525 3.84540 3.88292 4.35912 4.54628 4.71187 4.78484 5.03021 5.17263 5.34912 5.49590 5.60480 5.77580 5.87218 5.91400 6.09954 6.26501 6.51277 6.52929 6.80506 6.89406 6.95084 7.13064 7.20975 7.31851 7.56561 7.75545 7.92471 7.96022 8.17617 8.53194 8.80016 8.83490 10.14898 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.004610 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.589511 B = 6072.020821 C = 6502.237783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C 0.223 3.777 3 C 0.076 3.924 4 C -0.091 4.091 5 C -0.067 4.067 6 C -0.111 4.111 7 C -0.011 4.011 8 C -0.628 4.628 9 S 2.683 3.317 10 O -0.961 6.961 11 O -0.943 6.943 12 N -1.047 6.047 13 C 0.144 3.856 14 C -0.256 4.256 15 C -0.092 4.092 16 C -0.156 4.156 17 C 0.119 3.881 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.800 5.800 22 Si 0.910 3.090 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.219 4.219 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.154 0.846 31 H 0.418 0.582 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.280 0.720 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.088 1.307 -10.130 11.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.044 5.044 2 C -0.093 4.093 3 C 0.072 3.928 4 C -0.112 4.112 5 C -0.085 4.085 6 C -0.130 4.130 7 C -0.031 4.031 8 C -0.716 4.716 9 S 2.773 3.227 10 O -0.951 6.951 11 O -0.932 6.932 12 N -0.800 5.800 13 C 0.050 3.950 14 C -0.278 4.278 15 C -0.111 4.111 16 C -0.176 4.176 17 C 0.116 3.884 18 C -0.493 4.493 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.426 5.426 22 Si 0.735 3.265 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.243 4.243 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.172 0.828 31 H 0.254 0.746 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.140 0.860 35 H 0.091 0.909 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.714 0.638 -10.627 10.986 hybrid contribution 0.053 1.490 0.819 1.701 sum 2.767 2.128 -9.807 10.410 Atomic orbital electron populations 1.81197 1.11447 1.05345 1.06376 1.25674 0.92782 0.95635 0.95208 1.15336 0.84000 0.94126 0.99378 1.21273 0.94720 0.96578 0.98635 1.21393 0.93614 0.98669 0.94866 1.21538 1.01012 0.92472 0.97992 1.20994 0.91250 0.99864 0.90948 1.31066 1.06739 1.19018 1.14739 1.02408 0.73648 0.74247 0.72367 1.93611 1.59395 1.85869 1.56180 1.93563 1.61032 1.54652 1.83999 1.52910 1.18124 1.86874 1.22111 1.17119 0.94683 0.96566 0.86585 1.21013 1.00719 1.04219 1.01837 1.20600 0.98223 0.97732 0.94570 1.21494 1.00052 0.95519 1.00499 1.17464 0.90696 0.90734 0.89539 1.19552 0.95329 1.14381 1.20028 0.90490 1.25861 0.94472 0.97016 0.96839 1.69780 1.01631 1.36506 1.34705 0.86277 0.79571 0.79647 0.81018 1.19283 1.20282 1.18724 1.20997 1.05141 1.00611 0.97538 0.84148 0.84143 0.84146 0.82809 0.74599 0.85787 0.88534 0.85965 0.90897 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.37 -6.46 18.54 41.84 0.78 -5.68 16 2 C 0.22 3.63 13.18 -22.48 -0.30 3.33 16 3 C 0.08 1.11 5.73 -106.93 -0.61 0.49 16 4 C -0.09 -1.02 9.76 -39.17 -0.38 -1.41 16 5 C -0.07 -0.64 10.03 -39.64 -0.40 -1.04 16 6 C -0.11 -1.14 10.04 -39.49 -0.40 -1.53 16 7 C -0.01 -0.15 9.54 -39.64 -0.38 -0.53 16 8 C -0.63 -9.56 5.80 -39.17 -0.23 -9.79 16 9 S 2.68 45.74 4.99 -107.50 -0.54 45.20 16 10 O -0.96 -17.63 16.76 -57.17 -0.96 -18.59 16 11 O -0.94 -17.15 14.09 -57.17 -0.81 -17.96 16 12 N -1.05 -18.78 5.64 32.37 0.18 -18.60 16 13 C 0.14 3.01 6.12 -83.86 -0.51 2.50 16 14 C -0.26 -5.46 9.24 -39.09 -0.36 -5.82 16 15 C -0.09 -2.03 10.01 -39.70 -0.40 -2.42 16 16 C -0.16 -3.79 8.66 -38.84 -0.34 -4.12 16 17 C 0.12 2.99 5.55 -106.85 -0.59 2.39 16 18 C -0.46 -11.70 9.06 -37.74 -0.34 -12.04 16 19 H 0.08 1.89 7.87 -52.49 -0.41 1.48 16 20 C 0.07 1.80 5.25 -17.34 -0.09 1.70 16 21 N -0.80 -19.59 10.85 55.55 0.60 -18.99 16 22 Si 0.91 18.05 29.57 -169.99 -5.03 13.03 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 26 C -0.22 -5.05 9.71 -38.68 -0.38 -5.42 16 27 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.15 1.84 7.33 -52.49 -0.38 1.46 16 31 H 0.42 6.76 8.96 -34.47 -0.31 6.45 16 32 H 0.12 2.54 5.68 -52.49 -0.30 2.24 16 33 H 0.10 1.88 8.06 -52.48 -0.42 1.46 16 34 H 0.12 3.07 6.23 -52.49 -0.33 2.75 16 35 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 36 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -30.23 334.08 -9.41 -39.64 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -2.98 Total: 10.60 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: -5.70 Total: -33.69 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 1.56 Total: -43.27 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -1.76 Total: -36.54 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.03 kcal Atomic # 16 Polarization: 45.74 SS G_CDS: -0.54 Total: 45.20 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.23 -9.41 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313464169.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.551 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds