Wall clock time and date at job start Tue Mar 31 2020 15:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43190 * 179.97438 * 2 1 4 4 C 1.39659 * 120.15018 * 166.30037 * 3 2 1 5 5 C 1.37922 * 119.84835 * 180.02562 * 4 3 2 6 6 C 1.38393 * 120.15062 * 359.97336 * 5 4 3 7 7 C 1.38344 * 120.30328 * 0.02987 * 6 5 4 8 8 C 1.37959 * 120.15418 * 359.97438 * 7 6 5 9 9 S 1.76196 * 120.07820 * 180.02562 * 8 7 6 10 10 O 1.42099 * 106.40200 * 228.52469 * 9 8 7 11 11 O 1.42096 * 106.40393 * 1.44529 * 9 8 7 12 12 N 1.65600 * 107.21939 * 114.98555 * 9 8 7 13 13 C 1.39688 * 120.00097 * 298.54304 * 12 9 8 14 14 C 1.39338 * 119.95041 * 313.90328 * 13 12 9 15 15 C 1.38470 * 120.42225 * 179.72067 * 14 13 12 16 16 C 1.37684 * 120.32625 * 0.55108 * 15 14 13 17 17 C 1.40746 * 119.89198 * 359.72688 * 16 15 14 18 18 C 1.41411 * 120.20971 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00872 * 209.00767 * 18 17 16 20 20 C 1.39938 * 119.99545 * 29.01335 * 18 17 16 21 21 N 1.30831 * 120.00128 * 10.70441 * 20 18 17 22 22 Si 1.86800 * 119.99677 * 190.70473 * 20 18 17 23 23 H 1.48497 * 109.47331 * 90.00289 * 22 20 18 24 24 H 1.48507 * 109.47060 * 210.00011 * 22 20 18 25 25 H 1.48497 * 109.47317 * 330.00064 * 22 20 18 26 26 C 1.38272 * 119.95141 * 134.17540 * 13 12 9 27 27 H 1.08000 * 120.07350 * 0.02562 * 4 3 2 28 28 H 1.07995 * 119.92438 * 180.02562 * 5 4 3 29 29 H 1.07995 * 119.84574 * 179.74940 * 6 5 4 30 30 H 1.08000 * 119.91768 * 179.97438 * 7 6 5 31 31 H 0.97003 * 120.00285 * 118.54876 * 12 9 8 32 32 H 1.08002 * 119.78554 * 0.02562 * 14 13 12 33 33 H 1.08004 * 119.83552 * 180.27990 * 15 14 13 34 34 H 1.08002 * 120.05745 * 179.74619 * 16 15 14 35 35 H 0.96998 * 119.99618 * 180.02562 * 21 20 18 36 36 H 1.08001 * 120.16513 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 1.1742 -0.2860 5 6 4.6481 1.1677 -0.2848 6 6 5.3374 0.0018 -0.0005 7 6 4.6494 -1.1643 0.2836 8 6 3.2698 -1.1720 0.2858 9 16 2.3956 -2.6581 0.6486 10 8 1.4125 -2.8034 -0.3671 11 8 3.3796 -3.6454 0.9246 12 7 1.5726 -2.4097 2.0639 13 6 2.2731 -2.1256 3.2386 14 6 3.3927 -2.8811 3.5809 15 6 4.0978 -2.6042 4.7401 16 6 3.6930 -1.5857 5.5734 17 6 2.5606 -0.8177 5.2437 18 6 2.1393 0.2304 6.0945 19 1 1.0954 0.5035 6.1388 20 6 3.0752 0.9137 6.8789 21 7 4.3551 0.7327 6.6767 22 14 2.4971 2.0845 8.2148 23 1 2.3405 1.3411 9.4908 24 1 3.4986 3.1666 8.3921 25 1 1.1926 2.6765 7.8236 26 6 1.8511 -1.0986 4.0628 27 1 2.7322 2.0848 -0.5076 28 1 5.1914 2.0746 -0.5054 29 1 6.4174 0.0013 -0.0049 30 1 5.1936 -2.0707 0.5042 31 1 0.6041 -2.4615 2.0774 32 1 3.7155 -3.6846 2.9355 33 1 4.9669 -3.1930 4.9940 34 1 4.2438 -1.3761 6.4785 35 1 5.0037 1.2061 7.2208 36 1 0.9811 -0.5149 3.8005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313464169.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:30 Heat of formation + Delta-G solvation = -9.311154 kcal Electronic energy + Delta-G solvation = -25059.519261 eV Core-core repulsion = 21406.941888 eV Total energy + Delta-G solvation = -3652.577373 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.49872 -39.81727 -38.58752 -37.61676 -37.17787 -36.48267 -34.71028 -32.65467 -32.41086 -31.75109 -29.52742 -27.17590 -25.30385 -24.32494 -22.90548 -22.80502 -20.98227 -20.31380 -19.45208 -18.83117 -18.33150 -17.58809 -17.15704 -16.66141 -16.43319 -16.22693 -15.93304 -15.46298 -15.42623 -15.22419 -14.74164 -14.38857 -14.24904 -14.16187 -13.81599 -13.61287 -13.55966 -13.51437 -13.32189 -13.24280 -13.10022 -12.83445 -12.74012 -12.54520 -12.05748 -11.99993 -11.74426 -11.54223 -11.14720 -10.96502 -10.52117 -10.10628 -9.39952 -8.97292 -8.57272 -6.37399 -0.93956 -0.62928 0.00152 0.94875 1.00860 1.27649 1.41419 1.51114 1.53423 1.69860 1.73122 2.23341 2.32096 2.51267 2.68275 2.74777 3.17786 3.67072 3.73785 3.97933 4.17227 4.25309 4.28896 4.40658 4.53280 4.74406 4.77564 4.90097 5.05661 5.09662 5.12078 5.25599 5.26544 5.31615 5.48081 5.70173 5.82284 6.02481 6.10387 6.10964 6.15207 6.36838 6.69278 6.95144 6.99881 8.38329 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.004610 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.589511 B = 6072.020821 C = 6502.237783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.234 3.766 3 C 0.045 3.955 4 C -0.086 4.086 5 C -0.054 4.054 6 C -0.102 4.102 7 C -0.027 4.027 8 C -0.645 4.645 9 S 2.691 3.309 10 O -0.978 6.978 11 O -0.958 6.958 12 N -1.050 6.050 13 C 0.161 3.839 14 C -0.257 4.257 15 C -0.087 4.087 16 C -0.177 4.177 17 C 0.095 3.905 18 C -0.498 4.498 19 H 0.071 0.929 20 C 0.039 3.961 21 N -0.824 5.824 22 Si 0.978 3.022 23 H -0.263 1.263 24 H -0.266 1.266 25 H -0.265 1.265 26 C -0.233 4.233 27 H 0.167 0.833 28 H 0.187 0.813 29 H 0.179 0.821 30 H 0.159 0.841 31 H 0.423 0.577 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.288 0.712 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.063 2.871 -10.728 12.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.082 4.082 3 C 0.040 3.960 4 C -0.107 4.107 5 C -0.072 4.072 6 C -0.122 4.122 7 C -0.047 4.047 8 C -0.737 4.737 9 S 2.785 3.215 10 O -0.968 6.968 11 O -0.948 6.948 12 N -0.802 5.802 13 C 0.067 3.933 14 C -0.279 4.279 15 C -0.106 4.106 16 C -0.198 4.198 17 C 0.092 3.908 18 C -0.528 4.528 19 H 0.089 0.911 20 C -0.175 4.175 21 N -0.450 5.450 22 Si 0.799 3.201 23 H -0.188 1.188 24 H -0.190 1.190 25 H -0.189 1.189 26 C -0.257 4.257 27 H 0.185 0.815 28 H 0.205 0.795 29 H 0.197 0.803 30 H 0.177 0.823 31 H 0.260 0.740 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.127 0.873 35 H 0.099 0.901 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.660 2.150 -11.224 12.341 hybrid contribution -0.441 1.006 0.852 1.390 sum 4.219 3.156 -10.371 11.633 Atomic orbital electron populations 1.81184 1.12504 1.06510 1.08070 1.26118 0.93325 0.94642 0.94112 1.15577 0.83087 0.95418 1.01921 1.21739 0.95860 0.96173 0.96941 1.21995 0.92872 1.00071 0.92220 1.22060 1.02970 0.91417 0.95708 1.21294 0.90437 1.01560 0.91382 1.30608 1.07633 1.17892 1.17563 1.01836 0.73248 0.74735 0.71636 1.93588 1.60371 1.86614 1.56236 1.93525 1.61030 1.56233 1.84031 1.52926 1.18585 1.86864 1.21828 1.17041 0.94212 0.95289 0.86773 1.21210 1.00619 1.04325 1.01731 1.20855 0.98728 0.96979 0.94063 1.21426 1.00527 0.96891 1.00922 1.17765 0.91508 0.91224 0.90320 1.19761 0.95517 1.15638 1.21889 0.91110 1.26594 0.94376 0.98241 0.98339 1.69821 1.02485 1.37256 1.35476 0.85262 0.79073 0.77692 0.78045 1.18811 1.19043 1.18867 1.21025 1.05346 1.01583 0.97711 0.81545 0.79541 0.80343 0.82315 0.73981 0.84640 0.85975 0.87290 0.90101 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -14.59 18.54 19.00 0.35 -14.23 16 2 C 0.23 7.63 13.18 88.33 1.16 8.79 16 3 C 0.04 1.25 5.73 -21.36 -0.12 1.13 16 4 C -0.09 -1.68 9.76 22.54 0.22 -1.46 16 5 C -0.05 -0.77 10.03 22.23 0.22 -0.55 16 6 C -0.10 -1.68 10.04 22.33 0.22 -1.46 16 7 C -0.03 -0.65 9.54 22.23 0.21 -0.44 16 8 C -0.65 -19.09 5.80 22.54 0.13 -18.96 16 9 S 2.69 92.06 4.99 -56.49 -0.28 91.77 16 10 O -0.98 -36.49 16.76 -128.00 -2.15 -38.63 16 11 O -0.96 -34.59 14.09 -128.00 -1.80 -36.39 16 12 N -1.05 -38.21 5.64 -51.49 -0.29 -38.50 16 13 C 0.16 6.80 6.12 38.16 0.23 7.03 16 14 C -0.26 -10.84 9.24 22.59 0.21 -10.63 16 15 C -0.09 -3.80 10.01 22.19 0.22 -3.58 16 16 C -0.18 -8.77 8.66 22.75 0.20 -8.57 16 17 C 0.09 4.88 5.55 -21.31 -0.12 4.76 16 18 C -0.50 -25.84 9.06 23.46 0.21 -25.63 16 19 H 0.07 3.61 7.87 -2.91 -0.02 3.58 16 20 C 0.04 1.88 5.25 85.25 0.45 2.33 16 21 N -0.82 -40.45 10.85 21.83 0.24 -40.22 16 22 Si 0.98 36.83 29.57 68.60 2.03 38.86 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 26 C -0.23 -10.99 9.71 22.85 0.22 -10.77 16 27 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 28 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 29 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 30 H 0.16 3.54 7.33 -2.91 -0.02 3.52 16 31 H 0.42 14.15 8.96 -96.74 -0.87 13.28 16 32 H 0.14 5.42 5.68 -2.91 -0.02 5.40 16 33 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 34 H 0.11 5.61 6.23 -2.91 -0.02 5.59 16 35 H 0.29 12.76 8.30 -92.71 -0.77 11.99 16 36 H 0.09 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -67.26 334.08 2.06 -65.20 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.29 Total: 30.14 kcal Atomic # 6 Polarization: -61.68 SS G_CDS: 3.68 Total: -58.00 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: 0.30 Total: -92.95 kcal Atomic # 8 Polarization: -71.08 SS G_CDS: -3.95 Total: -75.03 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 16 Polarization: 92.06 SS G_CDS: -0.28 Total: 91.77 kcal Total: -67.26 2.06 -65.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313464169.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.887 kcal (2) G-P(sol) polarization free energy of solvation -67.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds