Wall clock time and date at job start Tue Mar 31 2020 15:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35595 * 125.67710 * 2 1 4 4 C 1.35509 * 108.85653 * 180.29078 * 3 2 1 5 5 Br 1.89096 * 126.07373 * 179.69715 * 4 3 2 6 6 C 1.39874 * 107.85173 * 359.73224 * 4 3 2 7 7 C 1.37648 * 125.67333 * 179.83068 * 2 1 3 8 8 C 1.46671 * 126.22568 * 359.97202 * 7 2 1 9 9 O 1.21694 * 119.99973 * 357.86765 * 8 7 2 10 10 N 1.34771 * 120.00148 * 177.86892 * 8 7 2 11 11 C 1.46500 * 120.00257 * 175.22210 * 10 8 7 12 12 C 1.53003 * 109.46871 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47679 * 300.00045 * 12 11 10 14 14 C 1.53008 * 109.46953 * 60.00321 * 12 11 10 15 15 C 1.50702 * 109.46925 * 179.97438 * 12 11 10 16 16 H 1.08000 * 120.00061 * 0.02562 * 15 12 11 17 17 C 1.37873 * 120.00104 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99983 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00173 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47473 * 89.99619 * 19 17 15 21 21 H 1.48496 * 109.47372 * 209.99829 * 19 17 15 22 22 H 1.48503 * 109.46886 * 329.99967 * 19 17 15 23 23 H 1.09004 * 109.47080 * 265.96908 * 1 2 3 24 24 H 1.09004 * 109.47056 * 25.96724 * 1 2 3 25 25 H 1.08998 * 109.47373 * 145.96747 * 1 2 3 26 26 H 1.07997 * 125.57649 * 0.02562 * 3 2 1 27 27 H 1.08009 * 126.45345 * 179.97438 * 6 4 3 28 28 H 0.97007 * 120.00172 * 355.21622 * 10 8 7 29 29 H 1.08997 * 109.47026 * 60.00280 * 11 10 8 30 30 H 1.08997 * 109.46926 * 299.99671 * 11 10 8 31 31 H 1.08996 * 109.46981 * 60.00055 * 13 12 11 32 32 H 1.09000 * 109.47238 * 179.97438 * 13 12 11 33 33 H 1.09000 * 109.47230 * 300.00476 * 13 12 11 34 34 H 1.09000 * 109.47052 * 59.99798 * 14 12 11 35 35 H 1.09000 * 109.46564 * 179.97438 * 14 12 11 36 36 H 1.08996 * 109.47096 * 299.99571 * 14 12 11 37 37 H 0.97004 * 119.99871 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2558 1.1015 0.0000 4 6 3.5529 0.7093 -0.0065 5 35 5.0610 1.8501 -0.0174 6 6 3.5781 -0.6892 -0.0045 7 6 2.2677 -1.1182 0.0033 8 6 1.8120 -2.5123 0.0080 9 8 0.6219 -2.7633 0.0485 10 7 2.7112 -3.5153 -0.0325 11 6 2.2632 -4.9058 0.0777 12 6 3.4733 -5.8390 0.0027 13 6 4.1900 -5.6386 -1.3341 14 6 4.4347 -5.5206 1.1496 15 6 3.0124 -7.2693 0.1167 16 1 1.9615 -7.4906 0.2308 17 6 3.9324 -8.2954 0.0753 18 7 5.2121 -8.0260 -0.0641 19 14 3.3611 -10.0683 0.2159 20 1 3.0731 -10.6045 -1.1386 21 1 4.4263 -10.8825 0.8544 22 1 2.1297 -10.1273 1.0438 23 1 -0.3633 -0.0722 1.0252 24 1 -0.3633 0.9239 -0.4500 25 1 -0.3634 -0.8516 -0.5751 26 1 1.9087 2.1241 0.0004 27 1 4.4583 -1.3152 -0.0088 28 1 3.6552 -3.3167 -0.1347 29 1 1.5786 -5.1327 -0.7396 30 1 1.7523 -5.0485 1.0299 31 1 4.5233 -4.6041 -1.4161 32 1 5.0523 -6.3031 -1.3873 33 1 3.5050 -5.8654 -2.1511 34 1 3.9242 -5.6634 2.1020 35 1 5.2966 -6.1857 1.0964 36 1 4.7681 -4.4861 1.0676 37 1 5.8593 -8.7479 -0.0935 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316111622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:16 Heat of formation + Delta-G solvation = 5.939427 kcal Electronic energy + Delta-G solvation = -20104.353295 eV Core-core repulsion = 16928.656925 eV Total energy + Delta-G solvation = -3175.696370 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.52837 -38.87378 -36.36552 -33.79407 -33.04022 -31.28287 -30.57097 -29.04379 -26.37152 -25.73277 -25.67484 -24.98393 -22.33155 -20.45076 -19.56357 -18.78142 -17.84235 -16.12739 -15.79453 -15.59505 -15.15971 -14.62444 -14.46265 -13.83040 -13.57940 -13.29237 -12.92430 -12.90212 -12.88139 -12.65738 -12.25918 -12.12491 -11.40638 -11.20911 -10.93707 -10.87679 -10.70766 -10.40236 -10.34156 -10.20865 -9.73926 -9.65261 -9.33425 -8.81016 -8.78363 -8.60959 -8.39619 -8.22702 -6.03062 -4.13444 1.42303 1.63758 2.29169 2.66196 3.27793 3.35027 3.38383 3.53512 3.73604 4.39261 4.63598 4.70664 4.96198 5.08457 5.14339 5.23776 5.41654 5.56076 5.81163 6.15155 6.27840 6.35487 6.49329 6.64888 6.71503 6.82389 6.88869 6.93558 6.95927 7.00361 7.33724 7.54710 7.68252 7.95249 7.99941 8.12699 8.36037 8.54446 8.86889 9.52497 10.98325 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.003031 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.178608 B = 9236.422373 C =10394.844306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.404 5.404 3 C 0.046 3.954 4 C -0.176 4.176 5 Br -0.034 7.034 6 C -0.117 4.117 7 C -0.028 4.028 8 C 0.578 3.422 9 O -0.558 6.558 10 N -0.700 5.700 11 C 0.134 3.866 12 C 0.056 3.944 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.507 4.507 16 H 0.058 0.942 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.105 0.895 26 H 0.176 0.824 27 H 0.154 0.846 28 H 0.401 0.599 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.007 0.993 32 H 0.086 0.914 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.086 0.914 36 H 0.007 0.993 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.091 21.218 -0.274 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.076 5.076 3 C -0.093 4.093 4 C -0.261 4.261 5 Br 0.050 6.950 6 C -0.144 4.144 7 C -0.143 4.143 8 C 0.364 3.636 9 O -0.439 6.439 10 N -0.349 5.349 11 C 0.012 3.988 12 C 0.055 3.945 13 C -0.189 4.189 14 C -0.189 4.189 15 C -0.545 4.545 16 H 0.076 0.924 17 C -0.134 4.134 18 N -0.523 5.523 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.098 0.902 24 H 0.102 0.898 25 H 0.123 0.877 26 H 0.193 0.807 27 H 0.171 0.829 28 H 0.237 0.763 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.105 0.895 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.105 0.895 36 H 0.026 0.974 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.608 21.264 -0.242 21.425 hybrid contribution -0.131 -1.015 0.055 1.025 sum -2.739 20.249 -0.187 20.434 Atomic orbital electron populations 1.22312 0.75285 1.05006 1.04573 1.43906 1.07157 1.04699 1.51862 1.21787 0.88923 0.92015 1.06624 1.20893 0.91652 0.94204 1.19397 1.96592 1.37020 1.63053 1.98344 1.21278 0.95472 0.93100 1.04519 1.20366 0.89652 0.88401 1.15855 1.16926 0.86080 0.83150 0.77475 1.90758 1.16018 1.84891 1.52252 1.46040 1.10196 1.07108 1.71593 1.21805 0.99185 0.77276 1.00572 1.18374 0.89973 0.93165 0.92987 1.21837 1.02275 0.97438 0.97377 1.21841 1.02188 0.97270 0.97643 1.20960 0.93558 0.89665 1.50367 0.92425 1.24872 0.94869 0.98946 0.94763 1.69803 1.00669 1.31846 1.49985 0.86571 0.78412 0.84667 0.78215 1.20718 1.21254 1.19921 0.90181 0.89786 0.87690 0.80664 0.82862 0.76252 0.92366 0.92464 0.97428 0.89511 0.95396 0.95390 0.89504 0.97412 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.44 59.85 0.62 1.29 16 2 N -0.40 -4.94 3.16 -120.20 -0.38 -5.32 16 3 C 0.05 0.48 11.34 -16.86 -0.19 0.29 16 4 C -0.18 -2.12 6.53 -39.94 -0.26 -2.38 16 5 Br -0.03 -0.36 34.08 -68.01 -2.32 -2.68 16 6 C -0.12 -1.57 10.33 -39.10 -0.40 -1.97 16 7 C -0.03 -0.42 6.89 -81.98 -0.56 -0.98 16 8 C 0.58 10.11 7.78 -12.86 -0.10 10.01 16 9 O -0.56 -11.02 14.79 5.19 0.08 -10.94 16 10 N -0.70 -12.46 4.94 -61.62 -0.30 -12.76 16 11 C 0.13 2.78 4.51 -4.04 -0.02 2.76 16 12 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 13 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 14 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 15 C -0.51 -13.08 8.01 -34.44 -0.28 -13.36 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 18 N -0.88 -23.33 9.35 55.43 0.52 -22.81 16 19 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 25 H 0.10 1.22 6.61 -51.93 -0.34 0.88 16 26 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.15 1.90 7.45 -52.48 -0.39 1.51 16 28 H 0.40 6.57 5.07 -40.82 -0.21 6.37 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 32 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 36 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 37 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 322.77 15.07 4.86 4.86 Total: -1.00 -28.29 322.77 -8.11 -36.40 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.78 Total: 4.51 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.76 Total: -6.76 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: -0.17 Total: -40.89 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -2.32 Total: -2.68 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.29 -8.11 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316111622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.339 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds