Wall clock time and date at job start Tue Mar 31 2020 15:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35595 * 125.67710 * 2 1 4 4 C 1.35509 * 108.85653 * 180.29078 * 3 2 1 5 5 Br 1.89096 * 126.07373 * 179.69715 * 4 3 2 6 6 C 1.39874 * 107.85173 * 359.73224 * 4 3 2 7 7 C 1.37648 * 125.67333 * 179.83068 * 2 1 3 8 8 C 1.46671 * 126.22568 * 359.97202 * 7 2 1 9 9 O 1.21694 * 119.99973 * 357.86765 * 8 7 2 10 10 N 1.34771 * 120.00148 * 177.86892 * 8 7 2 11 11 C 1.46500 * 120.00257 * 175.22210 * 10 8 7 12 12 C 1.53003 * 109.46871 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47679 * 300.00045 * 12 11 10 14 14 C 1.53008 * 109.46953 * 60.00321 * 12 11 10 15 15 C 1.50702 * 109.46925 * 179.97438 * 12 11 10 16 16 H 1.08000 * 120.00061 * 0.02562 * 15 12 11 17 17 C 1.37873 * 120.00104 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99983 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00173 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47473 * 89.99619 * 19 17 15 21 21 H 1.48496 * 109.47372 * 209.99829 * 19 17 15 22 22 H 1.48503 * 109.46886 * 329.99967 * 19 17 15 23 23 H 1.09004 * 109.47080 * 265.96908 * 1 2 3 24 24 H 1.09004 * 109.47056 * 25.96724 * 1 2 3 25 25 H 1.08998 * 109.47373 * 145.96747 * 1 2 3 26 26 H 1.07997 * 125.57649 * 0.02562 * 3 2 1 27 27 H 1.08009 * 126.45345 * 179.97438 * 6 4 3 28 28 H 0.97007 * 120.00172 * 355.21622 * 10 8 7 29 29 H 1.08997 * 109.47026 * 60.00280 * 11 10 8 30 30 H 1.08997 * 109.46926 * 299.99671 * 11 10 8 31 31 H 1.08996 * 109.46981 * 60.00055 * 13 12 11 32 32 H 1.09000 * 109.47238 * 179.97438 * 13 12 11 33 33 H 1.09000 * 109.47230 * 300.00476 * 13 12 11 34 34 H 1.09000 * 109.47052 * 59.99798 * 14 12 11 35 35 H 1.09000 * 109.46564 * 179.97438 * 14 12 11 36 36 H 1.08996 * 109.47096 * 299.99571 * 14 12 11 37 37 H 0.97004 * 119.99871 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2558 1.1015 0.0000 4 6 3.5529 0.7093 -0.0065 5 35 5.0610 1.8501 -0.0174 6 6 3.5781 -0.6892 -0.0045 7 6 2.2677 -1.1182 0.0033 8 6 1.8120 -2.5123 0.0080 9 8 0.6219 -2.7633 0.0485 10 7 2.7112 -3.5153 -0.0325 11 6 2.2632 -4.9058 0.0777 12 6 3.4733 -5.8390 0.0027 13 6 4.1900 -5.6386 -1.3341 14 6 4.4347 -5.5206 1.1496 15 6 3.0124 -7.2693 0.1167 16 1 1.9615 -7.4906 0.2308 17 6 3.9324 -8.2954 0.0753 18 7 5.2121 -8.0260 -0.0641 19 14 3.3611 -10.0683 0.2159 20 1 3.0731 -10.6045 -1.1386 21 1 4.4263 -10.8825 0.8544 22 1 2.1297 -10.1273 1.0438 23 1 -0.3633 -0.0722 1.0252 24 1 -0.3633 0.9239 -0.4500 25 1 -0.3634 -0.8516 -0.5751 26 1 1.9087 2.1241 0.0004 27 1 4.4583 -1.3152 -0.0088 28 1 3.6552 -3.3167 -0.1347 29 1 1.5786 -5.1327 -0.7396 30 1 1.7523 -5.0485 1.0299 31 1 4.5233 -4.6041 -1.4161 32 1 5.0523 -6.3031 -1.3873 33 1 3.5050 -5.8654 -2.1511 34 1 3.9242 -5.6634 2.1020 35 1 5.2966 -6.1857 1.0964 36 1 4.7681 -4.4861 1.0676 37 1 5.8593 -8.7479 -0.0935 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316111622.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:16 Heat of formation + Delta-G solvation = -9.559175 kcal Electronic energy + Delta-G solvation = -20105.025365 eV Core-core repulsion = 16928.656925 eV Total energy + Delta-G solvation = -3176.368440 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.053 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.51395 -40.29000 -38.07599 -35.21890 -34.18135 -32.89436 -31.68344 -30.09897 -27.55988 -27.45451 -27.22181 -26.71546 -23.61052 -21.45032 -20.84209 -20.46211 -18.99084 -17.83872 -17.03896 -16.84545 -16.68356 -16.25549 -15.81768 -15.05749 -14.88466 -14.55059 -14.45312 -14.21839 -14.04399 -13.75596 -13.57473 -13.19623 -13.10987 -13.00723 -12.68619 -12.59022 -12.25219 -12.12733 -11.78766 -11.48483 -11.36915 -11.18760 -10.94415 -10.69681 -10.39288 -10.06469 -9.71508 -9.25924 -8.01125 -6.17057 0.35044 0.76495 1.36643 1.43716 1.46675 1.54437 1.67983 2.26438 2.41439 2.54637 3.22696 3.69445 3.88554 4.00407 4.23394 4.37986 4.41127 4.50438 4.55180 4.70937 4.73091 4.85452 4.98491 5.06164 5.10121 5.19867 5.32237 5.40375 5.55603 5.67582 5.67645 5.68789 6.05519 6.14897 6.21469 6.43532 6.57329 6.86863 7.16579 7.50731 8.97863 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.003031 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.178608 B = 9236.422373 C =10394.844306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.406 5.406 3 C 0.073 3.927 4 C -0.196 4.196 5 Br -0.022 7.022 6 C -0.112 4.112 7 C -0.063 4.063 8 C 0.578 3.422 9 O -0.587 6.587 10 N -0.698 5.698 11 C 0.151 3.849 12 C 0.051 3.949 13 C -0.121 4.121 14 C -0.121 4.121 15 C -0.528 4.528 16 H 0.046 0.954 17 C 0.029 3.971 18 N -0.899 5.899 19 Si 0.945 3.055 20 H -0.279 1.279 21 H -0.283 1.283 22 H -0.275 1.275 23 H 0.083 0.917 24 H 0.125 0.875 25 H 0.080 0.920 26 H 0.216 0.784 27 H 0.158 0.842 28 H 0.409 0.591 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.063 0.937 36 H 0.035 0.965 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 23.425 -0.289 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.078 5.078 3 C -0.068 4.068 4 C -0.282 4.282 5 Br 0.062 6.938 6 C -0.139 4.139 7 C -0.177 4.177 8 C 0.367 3.633 9 O -0.470 6.470 10 N -0.348 5.348 11 C 0.028 3.972 12 C 0.050 3.950 13 C -0.179 4.179 14 C -0.179 4.179 15 C -0.567 4.567 16 H 0.065 0.935 17 C -0.171 4.171 18 N -0.537 5.537 19 Si 0.772 3.228 20 H -0.205 1.205 21 H -0.209 1.209 22 H -0.200 1.200 23 H 0.102 0.898 24 H 0.143 0.857 25 H 0.099 0.901 26 H 0.233 0.767 27 H 0.175 0.825 28 H 0.246 0.754 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.614 23.478 -0.259 23.624 hybrid contribution -0.120 -1.583 0.057 1.589 sum -2.735 21.894 -0.202 22.065 Atomic orbital electron populations 1.22459 0.73984 1.06099 1.04842 1.44137 1.08055 1.04327 1.51284 1.22451 0.88221 0.93029 1.03052 1.21066 0.92877 0.93856 1.20366 1.96607 1.36536 1.62268 1.98360 1.21447 0.95112 0.94140 1.03211 1.19932 0.90669 0.87576 1.19494 1.17269 0.85472 0.84249 0.76306 1.90738 1.17196 1.85573 1.53516 1.45821 1.10706 1.06053 1.72225 1.21344 0.97873 0.78756 0.99253 1.18369 0.90781 0.92343 0.93471 1.21678 1.00954 0.98550 0.96728 1.21680 1.00885 0.98399 0.96954 1.21255 0.93178 0.91618 1.50648 0.93533 1.25447 0.95063 1.01897 0.94702 1.69912 1.01124 1.32513 1.50174 0.85758 0.77910 0.81089 0.78036 1.20547 1.20911 1.19997 0.89797 0.85671 0.90149 0.76696 0.82466 0.75370 0.93830 0.93801 0.94669 0.91811 0.96217 0.96152 0.91826 0.94598 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 10.44 127.77 1.33 2.47 16 2 N -0.41 -8.98 3.16 -534.20 -1.69 -10.67 16 3 C 0.07 1.28 11.34 83.48 0.95 2.23 16 4 C -0.20 -4.20 6.53 22.03 0.14 -4.05 16 5 Br -0.02 -0.41 34.08 -20.37 -0.69 -1.10 16 6 C -0.11 -2.80 10.33 22.58 0.23 -2.57 16 7 C -0.06 -1.78 6.89 40.35 0.28 -1.50 16 8 C 0.58 20.19 7.78 86.45 0.67 20.86 16 9 O -0.59 -23.52 14.79 -4.33 -0.06 -23.59 16 10 N -0.70 -24.69 4.94 -467.10 -2.31 -26.99 16 11 C 0.15 6.38 4.51 86.38 0.39 6.77 16 12 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 13 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 14 C -0.12 -5.39 8.08 71.98 0.58 -4.81 16 15 C -0.53 -27.73 8.01 25.60 0.21 -27.52 16 16 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 17 C 0.03 1.51 5.15 84.65 0.44 1.94 16 18 N -0.90 -47.76 9.35 21.45 0.20 -47.56 16 19 Si 0.95 42.37 29.54 68.60 2.03 44.39 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 24 H 0.12 1.07 8.13 -2.39 -0.02 1.05 16 25 H 0.08 1.83 6.61 -2.39 -0.02 1.81 16 26 H 0.22 1.95 8.06 -2.91 -0.02 1.93 16 27 H 0.16 3.66 7.45 -2.91 -0.02 3.63 16 28 H 0.41 13.00 5.07 -92.70 -0.47 12.53 16 29 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.03 1.32 6.86 -2.39 -0.02 1.31 16 32 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 33 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 36 H 0.04 1.34 6.86 -2.39 -0.02 1.33 16 37 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 Total: -1.00 -61.27 322.77 3.87 -57.41 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.62 Total: 16.79 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: 5.77 Total: -8.68 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -3.80 Total: -85.23 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.06 Total: -23.59 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -0.69 Total: -1.10 kcal Total: -61.27 3.87 -57.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316111622.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.850 kcal (2) G-P(sol) polarization free energy of solvation -61.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds