Wall clock time and date at job start Tue Mar 31 2020 15:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00091 * 2 1 4 4 C 1.53007 * 109.46820 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46956 * 64.99985 * 4 3 2 6 6 C 1.33327 * 119.99574 * 84.32385 * 5 4 3 7 7 H 1.07996 * 120.00163 * 311.38311 * 6 5 4 8 8 C 1.46781 * 119.99556 * 131.66776 * 6 5 4 9 9 N 1.29316 * 120.00402 * 339.99592 * 8 6 5 10 10 Si 1.86807 * 119.99899 * 160.00086 * 8 6 5 11 11 H 1.48502 * 109.47146 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47313 * 119.99668 * 10 8 6 13 13 H 1.48504 * 109.47131 * 239.99773 * 10 8 6 14 14 C 1.34773 * 120.00240 * 264.32391 * 5 4 3 15 15 O 1.21473 * 120.00042 * 173.57533 * 14 5 4 16 16 C 1.47618 * 119.99959 * 353.57414 * 14 5 4 17 17 C 1.39724 * 120.16087 * 304.90751 * 16 14 5 18 18 C 1.37871 * 119.85176 * 179.74351 * 17 16 14 19 19 C 1.38442 * 120.19599 * 0.53338 * 18 17 16 20 20 N 1.48015 * 119.83790 * 179.71722 * 19 18 17 21 21 O 1.31696 * 120.00395 * 180.02562 * 20 19 18 22 22 O 1.31700 * 119.99568 * 0.02562 * 20 19 18 23 23 C 1.38292 * 120.33185 * 359.74213 * 19 18 17 24 24 C 1.38132 * 120.13783 * 359.97438 * 23 19 18 25 25 Cl 1.73600 * 120.09549 * 179.97438 * 24 23 19 26 26 H 1.09003 * 109.47250 * 300.00126 * 1 2 3 27 27 H 1.08998 * 109.47253 * 59.99693 * 1 2 3 28 28 H 1.08994 * 109.47672 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47269 * 60.00272 * 3 2 1 30 30 H 1.08994 * 109.47432 * 299.99849 * 3 2 1 31 31 H 1.08998 * 109.47317 * 305.00257 * 4 3 2 32 32 H 1.09002 * 109.47033 * 184.99906 * 4 3 2 33 33 H 0.97005 * 120.00054 * 185.04303 * 9 8 6 34 34 H 1.07997 * 120.07627 * 359.97438 * 17 16 14 35 35 H 1.08003 * 119.90002 * 180.27746 * 18 17 16 36 36 H 1.08001 * 119.93133 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1513 1.3119 -2.3406 7 1 3.3848 2.0088 -2.6457 8 6 5.3826 1.1836 -3.1292 9 7 6.4405 0.6644 -2.5966 10 14 5.4217 1.7705 -4.9022 11 1 4.0925 2.3206 -5.2709 12 1 6.4540 2.8275 -5.0512 13 1 5.7493 0.6293 -5.7943 14 6 4.2060 -0.7634 -1.3007 15 8 4.4579 -1.2968 -2.3626 16 6 4.1510 -1.5688 -0.0648 17 6 4.9404 -1.2221 1.0347 18 6 4.8801 -1.9757 2.1877 19 6 4.0485 -3.0804 2.2548 20 7 3.9946 -3.8875 3.4943 21 8 3.2050 -4.9393 3.5616 22 8 4.7364 -3.5537 4.5301 23 6 3.2680 -3.4340 1.1692 24 6 3.3133 -2.6853 0.0093 25 17 2.3336 -3.1306 -1.3530 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.8508 0.5683 0.8426 32 1 3.9786 2.1764 0.0902 33 1 7.2741 0.6462 -3.0923 34 1 5.5935 -0.3636 0.9829 35 1 5.4866 -1.7058 3.0396 36 1 2.6218 -4.2973 1.2285 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316513747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:22 Heat of formation + Delta-G solvation = -10.475636 kcal Electronic energy + Delta-G solvation = -26464.366057 eV Core-core repulsion = 22366.552468 eV Total energy + Delta-G solvation = -4097.813589 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.25573 -38.89775 -37.76320 -37.16338 -36.19454 -34.55515 -34.27588 -32.71322 -31.55171 -30.98828 -29.20845 -27.09368 -26.05573 -24.73947 -23.11252 -22.72126 -21.91129 -20.04894 -18.63568 -17.97862 -17.55070 -16.63310 -16.02627 -15.84274 -15.62840 -15.35695 -15.15174 -15.10687 -14.58229 -14.44609 -13.95920 -13.80335 -13.35643 -13.01247 -12.47702 -12.15864 -12.00086 -11.88228 -11.51066 -11.49850 -11.33604 -11.20953 -11.11656 -11.04779 -10.92332 -10.77328 -10.61949 -10.56873 -10.41330 -9.41094 -9.22404 -9.09835 -8.87535 -8.49521 -7.62104 -6.65472 -4.05484 -0.63234 0.98913 1.13410 1.22830 2.32036 3.02996 3.16631 3.18577 3.20928 3.91114 3.99191 4.13806 4.42719 4.50176 4.66661 4.80965 4.99077 5.02600 5.11907 5.38516 5.46152 5.49123 5.59651 5.63784 5.67579 5.69104 5.81406 5.89915 5.98572 6.10879 6.16030 6.30203 6.42280 6.92229 7.09802 7.45095 7.86957 8.47737 8.87053 9.18135 9.97344 10.36616 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.004722 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.612230 B = 5928.069034 C = 6299.360278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.379 6.379 3 C 0.046 3.954 4 C 0.088 3.912 5 N -0.405 5.405 6 C -0.364 4.364 7 H 0.085 0.915 8 C 0.083 3.917 9 N -0.793 5.793 10 Si 0.920 3.080 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.275 1.275 14 C 0.501 3.499 15 O -0.528 6.528 16 C -0.005 4.005 17 C -0.098 4.098 18 C -0.053 4.053 19 C -0.014 4.014 20 N -0.005 5.005 21 O -0.191 6.191 22 O -0.188 6.188 23 C -0.048 4.048 24 C -0.007 4.007 25 Cl -0.025 7.025 26 H 0.033 0.967 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.280 0.720 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.949 0.793 6.069 8.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.297 6.297 3 C -0.032 4.032 4 C -0.036 4.036 5 N -0.122 5.122 6 C -0.492 4.492 7 H 0.103 0.897 8 C -0.138 4.138 9 N -0.421 5.421 10 Si 0.745 3.255 11 H -0.187 1.187 12 H -0.207 1.207 13 H -0.200 1.200 14 C 0.290 3.710 15 O -0.408 6.408 16 C -0.011 4.011 17 C -0.118 4.118 18 C -0.072 4.072 19 C -0.102 4.102 20 N 0.468 4.532 21 O -0.380 6.380 22 O -0.378 6.378 23 C -0.068 4.068 24 C -0.036 4.036 25 Cl 0.005 6.995 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.177 0.823 35 H 0.174 0.826 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.582 0.542 4.843 7.410 hybrid contribution -0.214 0.207 -0.368 0.473 sum -5.797 0.750 4.475 7.362 Atomic orbital electron populations 1.22629 0.82087 1.02129 0.99255 1.87951 1.18725 1.27803 1.95241 1.23044 0.95490 0.84909 0.99773 1.22027 0.91713 1.00194 0.89665 1.41926 1.58413 1.03692 1.08195 1.19851 1.01232 1.23057 1.05071 0.89722 1.27022 0.93857 0.93069 0.99862 1.68767 1.00688 1.33834 1.38768 0.86038 0.78831 0.78278 0.82337 1.18684 1.20658 1.20037 1.17620 0.84756 0.82359 0.86256 1.90648 1.51041 1.69958 1.29144 1.21037 0.91056 0.92490 0.96524 1.21380 0.99442 1.00575 0.90401 1.21003 0.95400 0.91233 0.99601 1.20017 1.08034 0.97627 0.84546 1.50351 0.98820 1.00872 1.03126 1.96250 1.35620 1.14798 1.91321 1.96244 1.40037 1.75747 1.25744 1.20676 0.97052 0.99646 0.89464 1.20461 0.97164 0.96076 0.89941 1.98401 1.67824 1.91616 1.41668 0.94845 0.94410 0.90255 0.93676 0.92732 0.91167 0.89164 0.90813 0.82316 0.82625 0.82403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 11.01 101.05 1.11 1.57 16 2 O -0.38 -6.14 10.03 -35.23 -0.35 -6.50 16 3 C 0.05 0.69 6.23 37.16 0.23 0.92 16 4 C 0.09 1.49 5.59 -4.04 -0.02 1.47 16 5 N -0.40 -8.88 2.38 -114.41 -0.27 -9.16 16 6 C -0.36 -8.77 9.16 -13.45 -0.12 -8.89 16 7 H 0.09 1.99 8.00 -52.49 -0.42 1.57 16 8 C 0.08 2.03 4.53 -15.16 -0.07 1.97 16 9 N -0.79 -20.21 12.55 56.00 0.70 -19.51 16 10 Si 0.92 19.43 29.68 -169.99 -5.05 14.39 16 11 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 12 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 C 0.50 11.52 5.52 -12.43 -0.07 11.45 16 15 O -0.53 -14.30 14.76 5.39 0.08 -14.22 16 16 C -0.01 -0.10 4.49 -104.94 -0.47 -0.57 16 17 C -0.10 -1.57 7.49 -39.16 -0.29 -1.86 16 18 C -0.05 -0.75 9.56 -39.64 -0.38 -1.13 16 19 C -0.01 -0.22 6.89 -79.85 -0.55 -0.77 16 20 N 0.00 -0.08 4.98 34.01 0.17 0.09 16 21 O -0.19 -3.32 19.13 -31.57 -0.60 -3.92 16 22 O -0.19 -3.21 19.14 -31.57 -0.60 -3.81 16 23 C -0.05 -0.75 9.35 -39.60 -0.37 -1.12 16 24 C -0.01 -0.13 6.35 -39.04 -0.25 -0.38 16 25 Cl -0.02 -0.44 27.40 -51.86 -1.42 -1.86 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.10 4.49 -51.93 -0.23 0.87 16 32 H 0.09 1.42 8.07 -51.93 -0.42 1.01 16 33 H 0.28 6.70 8.27 -40.82 -0.34 6.36 16 34 H 0.16 2.39 7.65 -52.49 -0.40 1.99 16 35 H 0.16 1.86 7.56 -52.48 -0.40 1.46 16 36 H 0.16 2.20 7.56 -52.49 -0.40 1.81 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -29.56 339.86 -6.99 -36.55 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -3.51 Total: 0.17 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.25 Total: 2.66 kcal Atomic # 7 Polarization: -29.17 SS G_CDS: 0.60 Total: -28.57 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -1.48 Total: -28.45 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.05 Total: 14.39 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.42 Total: -1.86 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.56 -6.99 -36.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316513747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.074 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds