Wall clock time and date at job start Tue Mar 31 2020 15:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00091 * 2 1 4 4 C 1.53007 * 109.46820 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46956 * 64.99985 * 4 3 2 6 6 C 1.33327 * 119.99574 * 84.32385 * 5 4 3 7 7 H 1.07996 * 120.00163 * 311.38311 * 6 5 4 8 8 C 1.46781 * 119.99556 * 131.66776 * 6 5 4 9 9 N 1.29316 * 120.00402 * 339.99592 * 8 6 5 10 10 Si 1.86807 * 119.99899 * 160.00086 * 8 6 5 11 11 H 1.48502 * 109.47146 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47313 * 119.99668 * 10 8 6 13 13 H 1.48504 * 109.47131 * 239.99773 * 10 8 6 14 14 C 1.34773 * 120.00240 * 264.32391 * 5 4 3 15 15 O 1.21473 * 120.00042 * 173.57533 * 14 5 4 16 16 C 1.47618 * 119.99959 * 353.57414 * 14 5 4 17 17 C 1.39724 * 120.16087 * 304.90751 * 16 14 5 18 18 C 1.37871 * 119.85176 * 179.74351 * 17 16 14 19 19 C 1.38442 * 120.19599 * 0.53338 * 18 17 16 20 20 N 1.48015 * 119.83790 * 179.71722 * 19 18 17 21 21 O 1.31696 * 120.00395 * 180.02562 * 20 19 18 22 22 O 1.31700 * 119.99568 * 0.02562 * 20 19 18 23 23 C 1.38292 * 120.33185 * 359.74213 * 19 18 17 24 24 C 1.38132 * 120.13783 * 359.97438 * 23 19 18 25 25 Cl 1.73600 * 120.09549 * 179.97438 * 24 23 19 26 26 H 1.09003 * 109.47250 * 300.00126 * 1 2 3 27 27 H 1.08998 * 109.47253 * 59.99693 * 1 2 3 28 28 H 1.08994 * 109.47672 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47269 * 60.00272 * 3 2 1 30 30 H 1.08994 * 109.47432 * 299.99849 * 3 2 1 31 31 H 1.08998 * 109.47317 * 305.00257 * 4 3 2 32 32 H 1.09002 * 109.47033 * 184.99906 * 4 3 2 33 33 H 0.97005 * 120.00054 * 185.04303 * 9 8 6 34 34 H 1.07997 * 120.07627 * 359.97438 * 17 16 14 35 35 H 1.08003 * 119.90002 * 180.27746 * 18 17 16 36 36 H 1.08001 * 119.93133 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 4.1513 1.3119 -2.3406 7 1 3.3848 2.0088 -2.6457 8 6 5.3826 1.1836 -3.1292 9 7 6.4405 0.6644 -2.5966 10 14 5.4217 1.7705 -4.9022 11 1 4.0925 2.3206 -5.2709 12 1 6.4540 2.8275 -5.0512 13 1 5.7493 0.6293 -5.7943 14 6 4.2060 -0.7634 -1.3007 15 8 4.4579 -1.2968 -2.3626 16 6 4.1510 -1.5688 -0.0648 17 6 4.9404 -1.2221 1.0347 18 6 4.8801 -1.9757 2.1877 19 6 4.0485 -3.0804 2.2548 20 7 3.9946 -3.8875 3.4943 21 8 3.2050 -4.9393 3.5616 22 8 4.7364 -3.5537 4.5301 23 6 3.2680 -3.4340 1.1692 24 6 3.3133 -2.6853 0.0093 25 17 2.3336 -3.1306 -1.3530 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.8508 0.5683 0.8426 32 1 3.9786 2.1764 0.0902 33 1 7.2741 0.6462 -3.0923 34 1 5.5935 -0.3636 0.9829 35 1 5.4866 -1.7058 3.0396 36 1 2.6218 -4.2973 1.2285 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316513747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:21 Heat of formation + Delta-G solvation = -27.578675 kcal Electronic energy + Delta-G solvation = -26465.107701 eV Core-core repulsion = 22366.552468 eV Total energy + Delta-G solvation = -4098.555233 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67635 -40.37436 -39.11075 -38.50423 -37.58515 -36.21161 -35.64675 -34.38509 -32.99574 -32.32704 -30.55545 -28.54121 -27.15092 -26.33546 -24.44373 -24.12138 -23.27220 -21.62633 -19.98725 -19.35384 -19.13374 -18.08898 -17.30675 -17.17013 -17.05086 -16.87891 -16.47330 -16.43095 -16.06658 -15.82064 -15.32562 -15.17901 -14.83924 -14.47537 -13.95640 -13.62483 -13.39655 -13.23790 -12.96192 -12.84998 -12.74142 -12.67377 -12.56829 -12.53334 -12.40891 -12.12165 -12.01700 -11.93717 -11.93036 -10.87761 -10.67797 -10.47178 -10.29101 -10.17259 -9.32151 -8.41330 -5.90368 -1.96510 -0.32319 -0.22061 -0.13769 0.94262 1.34738 1.45235 1.51485 1.80972 2.25629 2.38975 2.83253 2.96654 3.13874 3.23623 3.38055 3.62538 3.69533 3.73174 4.15272 4.28604 4.30784 4.37115 4.42259 4.53940 4.59131 4.60871 4.67931 4.80379 4.83023 4.88409 5.01945 5.10133 5.32746 5.53621 6.12387 6.35082 6.74700 7.18468 7.51933 8.27623 8.62175 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.004722 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.612230 B = 5928.069034 C = 6299.360278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.403 6.403 3 C 0.051 3.949 4 C 0.084 3.916 5 N -0.414 5.414 6 C -0.397 4.397 7 H 0.079 0.921 8 C 0.045 3.955 9 N -0.831 5.831 10 Si 0.968 3.032 11 H -0.259 1.259 12 H -0.264 1.264 13 H -0.294 1.294 14 C 0.499 3.501 15 O -0.581 6.581 16 C -0.021 4.021 17 C -0.090 4.090 18 C -0.029 4.029 19 C -0.008 4.008 20 N -0.007 5.007 21 O -0.199 6.199 22 O -0.171 6.171 23 C -0.037 4.037 24 C -0.012 4.012 25 Cl -0.033 7.033 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.278 0.722 34 H 0.169 0.831 35 H 0.190 0.810 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.448 0.519 8.851 10.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.323 6.323 3 C -0.027 4.027 4 C -0.039 4.039 5 N -0.130 5.130 6 C -0.525 4.525 7 H 0.096 0.904 8 C -0.171 4.171 9 N -0.461 5.461 10 Si 0.792 3.208 11 H -0.183 1.183 12 H -0.189 1.189 13 H -0.220 1.220 14 C 0.289 3.711 15 O -0.465 6.465 16 C -0.027 4.027 17 C -0.110 4.110 18 C -0.048 4.048 19 C -0.095 4.095 20 N 0.469 4.531 21 O -0.387 6.387 22 O -0.367 6.367 23 C -0.057 4.057 24 C -0.041 4.041 25 Cl -0.003 7.003 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.187 0.813 35 H 0.208 0.792 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.128 0.301 7.619 9.782 hybrid contribution -0.148 0.051 -0.884 0.897 sum -6.276 0.351 6.736 9.213 Atomic orbital electron populations 1.22771 0.80470 1.02855 1.00315 1.87908 1.20575 1.28320 1.95452 1.22973 0.94067 0.84887 1.00739 1.22202 0.93145 1.00536 0.87994 1.42029 1.58200 1.03545 1.09256 1.19848 1.01414 1.24412 1.06859 0.90353 1.27632 0.93834 0.93286 1.02363 1.68814 1.01003 1.36531 1.39714 0.85318 0.79219 0.77502 0.78768 1.18270 1.18941 1.22022 1.18075 0.83375 0.82854 0.86809 1.90594 1.53151 1.71239 1.31480 1.20861 0.92802 0.93064 0.95933 1.21452 0.98732 1.00973 0.89835 1.21268 0.94232 0.89562 0.99709 1.20181 1.07682 0.97536 0.84087 1.50456 0.98625 1.00831 1.03223 1.96274 1.35895 1.15066 1.91424 1.96251 1.39364 1.75314 1.25744 1.20768 0.96845 0.99582 0.88545 1.20504 0.97192 0.96025 0.90399 1.98401 1.67994 1.91607 1.42314 0.92498 0.94581 0.89762 0.90106 0.94211 0.89718 0.88323 0.91089 0.81338 0.79249 0.80652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -12.53 10.03 -148.98 -1.49 -14.03 16 3 C 0.05 1.47 6.23 71.98 0.45 1.92 16 4 C 0.08 2.79 5.59 86.38 0.48 3.27 16 5 N -0.41 -18.43 2.38 -634.19 -1.51 -19.94 16 6 C -0.40 -19.78 9.16 86.70 0.79 -18.99 16 7 H 0.08 3.84 8.00 -2.91 -0.02 3.82 16 8 C 0.05 2.31 4.53 87.30 0.40 2.71 16 9 N -0.83 -43.95 12.55 23.26 0.29 -43.66 16 10 Si 0.97 41.33 29.68 68.60 2.04 43.37 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 12 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 13 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 14 C 0.50 23.28 5.52 86.72 0.48 23.76 16 15 O -0.58 -32.58 14.76 -3.63 -0.05 -32.63 16 16 C -0.02 -0.79 4.49 -20.07 -0.09 -0.88 16 17 C -0.09 -2.65 7.49 22.54 0.17 -2.48 16 18 C -0.03 -0.69 9.56 22.23 0.21 -0.48 16 19 C -0.01 -0.21 6.89 36.44 0.25 0.04 16 20 N -0.01 -0.21 4.98 -46.32 -0.23 -0.44 16 21 O -0.20 -6.22 19.13 3.52 0.07 -6.15 16 22 O -0.17 -5.06 19.14 3.51 0.07 -4.99 16 23 C -0.04 -1.06 9.35 22.26 0.21 -0.85 16 24 C -0.01 -0.42 6.35 22.62 0.14 -0.27 16 25 Cl -0.03 -1.16 27.40 -2.72 -0.07 -1.23 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 2.49 4.49 -2.39 -0.01 2.48 16 32 H 0.10 3.05 8.07 -2.39 -0.02 3.03 16 33 H 0.28 13.88 8.27 -92.70 -0.77 13.11 16 34 H 0.17 4.69 7.65 -2.91 -0.02 4.67 16 35 H 0.19 3.44 7.56 -2.91 -0.02 3.42 16 36 H 0.18 4.36 7.56 -2.91 -0.02 4.34 16 Total: -1.00 -65.59 339.86 4.98 -60.62 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.14 Total: 9.34 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 4.74 Total: 9.75 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -1.45 Total: -64.04 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -1.41 Total: -57.81 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.04 Total: 43.37 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.07 Total: -1.23 kcal Total: -65.59 4.98 -60.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316513747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.036 kcal (2) G-P(sol) polarization free energy of solvation -65.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds