Wall clock time and date at job start Tue Mar 31 2020 15:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 114.00099 * 2 1 4 4 C 1.53000 * 109.47446 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47061 * 64.99402 * 4 3 2 6 6 C 1.33328 * 120.00637 * 270.00522 * 5 4 3 7 7 H 1.07998 * 120.00348 * 140.55069 * 6 5 4 8 8 C 1.46788 * 119.99469 * 320.55454 * 6 5 4 9 9 N 1.29321 * 119.99553 * 162.03343 * 8 6 5 10 10 Si 1.86793 * 120.00032 * 342.03514 * 8 6 5 11 11 H 1.48505 * 109.47221 * 95.23402 * 10 8 6 12 12 H 1.48504 * 109.46913 * 215.23121 * 10 8 6 13 13 H 1.48497 * 109.47220 * 335.23041 * 10 8 6 14 14 C 1.34786 * 119.99555 * 90.00027 * 5 4 3 15 15 O 1.21475 * 119.99918 * 4.70949 * 14 5 4 16 16 C 1.47700 * 119.99824 * 184.70457 * 14 5 4 17 17 C 1.39674 * 120.14593 * 328.10916 * 16 14 5 18 18 C 1.38026 * 119.83156 * 179.97438 * 17 16 14 19 19 Cl 1.73599 * 119.94132 * 179.97438 * 18 17 16 20 20 C 1.38520 * 120.12575 * 0.02562 * 18 17 16 21 21 C 1.38341 * 120.29423 * 359.97438 * 20 18 17 22 22 N 1.48014 * 119.91526 * 180.02562 * 21 20 18 23 23 O 1.31700 * 120.00045 * 179.97438 * 22 21 20 24 24 O 1.31701 * 120.00065 * 359.97438 * 22 21 20 25 25 C 1.37961 * 120.16789 * 0.02562 * 21 20 18 26 26 H 1.08994 * 109.47267 * 300.00389 * 1 2 3 27 27 H 1.09007 * 109.46973 * 60.00246 * 1 2 3 28 28 H 1.08997 * 109.47212 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47447 * 59.99659 * 3 2 1 30 30 H 1.09007 * 109.47193 * 299.99944 * 3 2 1 31 31 H 1.09005 * 109.46654 * 305.00238 * 4 3 2 32 32 H 1.08995 * 109.47084 * 184.99676 * 4 3 2 33 33 H 0.97002 * 119.99604 * 185.00985 * 9 8 6 34 34 H 1.07997 * 120.08551 * 359.70657 * 17 16 14 35 35 H 1.07996 * 119.85504 * 179.97438 * 20 18 17 36 36 H 1.07998 * 120.06270 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.0946 -0.7616 -1.3322 7 1 3.7916 -1.2765 -2.2319 8 6 4.6363 -1.5211 -0.1989 9 7 4.4379 -2.7967 -0.1215 10 14 5.6119 -0.6452 1.1315 11 1 4.7102 -0.2978 2.2591 12 1 6.6942 -1.5370 1.6199 13 1 6.2070 0.5955 0.5732 14 6 4.2633 1.3329 -2.3200 15 8 4.2387 2.5434 -2.2217 16 6 4.6075 0.7037 -3.6112 17 6 5.2735 -0.5238 -3.6380 18 6 5.5914 -1.1062 -4.8482 19 17 6.4198 -2.6314 -4.8848 20 6 5.2518 -0.4756 -6.0339 21 6 4.5921 0.7402 -6.0135 22 7 4.2326 1.4065 -7.2854 23 8 3.6041 2.5637 -7.2679 24 8 4.5413 0.8421 -8.4346 25 6 4.2684 1.3333 -4.8106 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6886 1.8465 0.8899 30 1 1.6886 1.8464 -0.8900 31 1 3.8507 0.5685 0.8427 32 1 3.9784 2.1766 0.0902 33 1 4.7323 -3.2866 0.6622 34 1 5.5428 -1.0138 -2.7140 35 1 5.5030 -0.9350 -6.9784 36 1 3.7530 2.2823 -4.7967 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317019433.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:37 Heat of formation + Delta-G solvation = -17.610466 kcal Electronic energy + Delta-G solvation = -25961.801214 eV Core-core repulsion = 21863.678235 eV Total energy + Delta-G solvation = -4098.122979 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.87500 -40.62956 -39.34464 -38.56541 -37.61393 -36.88096 -35.70356 -34.33990 -33.43417 -32.41038 -30.98059 -27.99244 -27.25081 -26.86608 -25.25275 -23.77306 -23.58070 -21.43879 -20.26869 -19.38684 -18.92865 -18.11629 -17.66450 -17.50207 -17.27158 -17.07671 -16.57972 -16.50540 -16.28102 -15.96012 -15.65115 -15.43274 -14.70107 -14.57903 -14.40109 -13.73825 -13.50888 -13.37831 -13.22732 -13.12061 -12.83438 -12.68494 -12.63449 -12.48112 -12.41662 -12.17796 -11.99955 -11.98919 -11.74052 -11.22280 -10.80756 -10.62890 -10.50357 -10.28945 -9.89261 -8.57590 -5.94340 -1.93952 -0.61379 -0.21831 -0.13984 0.81653 1.19168 1.33445 1.40823 1.55052 2.12650 2.19317 2.37394 2.79155 3.01574 3.27156 3.37288 3.51919 3.66813 3.72412 3.98795 4.10243 4.14354 4.32515 4.37370 4.44711 4.52034 4.55032 4.60936 4.68046 4.74106 4.84047 4.88487 5.10595 5.22437 5.47475 5.94031 6.16625 6.35796 6.73239 7.30672 7.74786 8.45796 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.005085 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.728993 B = 5505.021332 C = 6845.271242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.394 6.394 3 C 0.059 3.941 4 C 0.086 3.914 5 N -0.410 5.410 6 C -0.391 4.391 7 H 0.090 0.910 8 C 0.062 3.938 9 N -0.832 5.832 10 Si 0.916 3.084 11 H -0.258 1.258 12 H -0.277 1.277 13 H -0.259 1.259 14 C 0.486 3.514 15 O -0.616 6.616 16 C -0.093 4.093 17 C -0.001 4.001 18 C -0.049 4.049 19 Cl -0.024 7.024 20 C -0.022 4.022 21 C -0.013 4.013 22 N -0.008 5.008 23 O -0.207 6.207 24 O -0.157 6.157 25 C -0.010 4.010 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.293 0.707 34 H 0.185 0.815 35 H 0.187 0.813 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.238 0.182 -1.476 1.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C -0.019 4.019 4 C -0.036 4.036 5 N -0.124 5.124 6 C -0.519 4.519 7 H 0.107 0.893 8 C -0.155 4.155 9 N -0.461 5.461 10 Si 0.740 3.260 11 H -0.184 1.184 12 H -0.203 1.203 13 H -0.183 1.183 14 C 0.278 3.722 15 O -0.505 6.505 16 C -0.097 4.097 17 C -0.020 4.020 18 C -0.076 4.076 19 Cl 0.006 6.994 20 C -0.042 4.042 21 C -0.100 4.100 22 N 0.469 4.531 23 O -0.392 6.392 24 O -0.357 6.357 25 C -0.031 4.031 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.202 0.798 35 H 0.205 0.795 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.580 -0.015 -0.707 0.914 hybrid contribution -0.149 0.358 0.336 0.513 sum 0.431 0.343 -0.371 0.664 Atomic orbital electron populations 1.22851 0.80599 1.03123 1.00349 1.88135 1.20417 1.27383 1.95349 1.22805 0.93044 0.85235 1.00794 1.22065 0.94251 0.99410 0.87887 1.42356 1.53543 1.06581 1.09914 1.19657 1.46505 0.80583 1.05133 0.89277 1.27298 0.94832 0.94712 0.98688 1.68688 1.38216 1.09636 1.29522 0.86300 0.79472 0.80001 0.80195 1.18376 1.20331 1.18283 1.18026 0.82848 0.85976 0.85360 1.90620 1.60092 1.14328 1.85483 1.19675 1.01523 0.95429 0.93055 1.22887 0.87684 0.91566 0.99872 1.20559 1.02324 0.91886 0.92866 1.98410 1.75920 1.26389 1.98713 1.21116 0.91946 0.90505 1.00646 1.19838 1.11724 0.97265 0.81140 1.50438 0.97190 1.01392 1.04042 1.96302 1.42052 1.04576 1.96229 1.96229 1.57708 1.66361 1.15394 1.21080 0.93645 0.99773 0.88603 0.92580 0.94258 0.89461 0.90253 0.93976 0.91093 0.88517 0.89513 0.79804 0.79549 0.82517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.39 -14.92 10.15 -148.98 -1.51 -16.43 16 3 C 0.06 2.02 6.28 71.98 0.45 2.47 16 4 C 0.09 3.33 4.68 86.38 0.40 3.73 16 5 N -0.41 -17.52 2.13 -634.08 -1.35 -18.87 16 6 C -0.39 -17.51 6.40 86.70 0.55 -16.96 16 7 H 0.09 4.27 6.13 -2.91 -0.02 4.25 16 8 C 0.06 2.76 5.53 87.30 0.48 3.25 16 9 N -0.83 -38.92 13.87 23.26 0.32 -38.60 16 10 Si 0.92 35.57 25.01 68.60 1.72 37.29 16 11 H -0.26 -9.60 6.82 99.48 0.68 -8.92 16 12 H -0.28 -10.51 7.11 99.48 0.71 -9.81 16 13 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 14 C 0.49 20.74 7.39 86.74 0.64 21.38 16 15 O -0.62 -28.40 16.30 -3.64 -0.06 -28.46 16 16 C -0.09 -3.44 5.52 -20.09 -0.11 -3.55 16 17 C 0.00 -0.03 7.49 22.57 0.17 0.14 16 18 C -0.05 -1.40 6.31 22.29 0.14 -1.25 16 19 Cl -0.02 -0.61 28.95 -2.72 -0.08 -0.69 16 20 C -0.02 -0.58 9.36 22.36 0.21 -0.37 16 21 C -0.01 -0.40 6.88 36.34 0.25 -0.15 16 22 N -0.01 -0.27 4.98 -46.56 -0.23 -0.50 16 23 O -0.21 -7.44 19.14 3.51 0.07 -7.38 16 24 O -0.16 -4.99 19.14 3.51 0.07 -4.92 16 25 C -0.01 -0.35 9.13 22.54 0.21 -0.14 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.07 2.78 3.26 -2.38 -0.01 2.77 16 32 H 0.10 3.57 7.36 -2.39 -0.02 3.56 16 33 H 0.29 12.66 8.27 -92.71 -0.77 11.89 16 34 H 0.19 6.97 5.39 -2.91 -0.02 6.96 16 35 H 0.19 3.98 7.56 -2.91 -0.02 3.96 16 36 H 0.16 5.48 7.47 -2.91 -0.02 5.46 16 Total: -1.00 -53.96 332.85 4.71 -49.25 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 1.13 Total: 18.77 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 4.65 Total: 10.54 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -1.26 Total: -57.97 kcal Atomic # 8 Polarization: -55.75 SS G_CDS: -1.44 Total: -57.19 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 1.72 Total: 37.29 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -53.96 4.71 -49.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317019433.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.640 kcal (2) G-P(sol) polarization free energy of solvation -53.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds