Wall clock time and date at job start Tue Mar 31 2020 14:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00070 * 2 1 4 4 H 1.48503 * 109.47322 * 239.99938 * 3 2 1 5 5 H 1.48504 * 109.47088 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47088 * 119.99678 * 3 2 1 7 7 C 1.37873 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99703 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.53040 * 109.45966 * 180.02562 * 9 7 2 11 11 C 1.53194 * 109.31058 * 178.62976 * 10 9 7 12 12 N 1.46922 * 108.77430 * 54.63491 * 11 10 9 13 13 C 1.34783 * 120.63120 * 126.36824 * 12 11 10 14 14 O 1.21534 * 119.99624 * 359.97438 * 13 12 11 15 15 C 1.47994 * 119.99990 * 179.97438 * 13 12 11 16 16 C 1.39971 * 120.94176 * 269.99665 * 15 13 12 17 17 Cl 1.73599 * 120.51385 * 359.97438 * 16 15 13 18 18 C 1.38299 * 118.97619 * 179.69945 * 16 15 13 19 19 N 1.31785 * 120.91440 * 0.28317 * 18 16 15 20 20 C 1.31791 * 122.10182 * 359.97438 * 19 18 16 21 21 C 1.38299 * 120.90952 * 359.97438 * 20 19 18 22 22 Cl 1.73598 * 120.51070 * 180.02562 * 21 20 19 23 23 C 1.46920 * 118.74267 * 306.64208 * 12 11 10 24 24 C 1.52760 * 109.00802 * 53.30789 * 23 12 11 25 25 H 0.97004 * 119.99741 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.45952 * 299.97165 * 9 7 2 27 27 H 1.09002 * 109.49917 * 58.67412 * 10 9 7 28 28 H 1.09006 * 109.52332 * 298.59837 * 10 9 7 29 29 H 1.08990 * 109.58627 * 294.84255 * 11 10 9 30 30 H 1.09002 * 109.70080 * 174.48764 * 11 10 9 31 31 H 1.07999 * 119.54375 * 180.25741 * 18 16 15 32 32 H 1.08000 * 119.54683 * 180.02562 * 20 19 18 33 33 H 1.08997 * 109.59197 * 173.14930 * 23 12 11 34 34 H 1.09005 * 109.58504 * 293.57405 * 23 12 11 35 35 H 1.09007 * 109.56716 * 185.55365 * 24 23 12 36 36 H 1.09005 * 109.38574 * 65.51711 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2457 -3.6622 0.0027 11 6 1.4766 -4.9866 0.0385 12 7 0.5224 -5.0096 -1.0785 13 6 0.5122 -6.0361 -1.9519 14 8 1.2976 -6.9541 -1.8199 15 6 -0.4554 -6.0452 -3.0717 16 6 -1.7191 -6.6291 -2.9262 17 17 -2.1841 -7.3606 -1.4221 18 6 -2.5937 -6.6092 -3.9973 19 7 -2.2490 -6.0563 -5.1427 20 6 -1.0681 -5.5001 -5.3246 21 6 -0.1312 -5.4735 -4.3077 22 17 1.4210 -4.7376 -4.5584 23 6 -0.4164 -3.8895 -1.2289 24 6 0.3702 -2.5801 -1.2472 25 1 -0.4850 0.8401 0.0004 26 1 0.6251 -2.5563 0.8923 27 1 2.8881 -3.5907 0.8804 28 1 2.8562 -3.6202 -0.8993 29 1 0.9370 -5.0704 0.9818 30 1 2.1735 -5.8190 -0.0591 31 1 -3.5727 -7.0534 -3.8937 32 1 -0.8290 -5.0583 -6.2806 33 1 -0.9666 -3.9968 -2.1637 34 1 -1.1135 -3.8820 -0.3910 35 1 -0.3224 -1.7384 -1.2592 36 1 0.9979 -2.5475 -2.1378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334177084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:11 Heat of formation + Delta-G solvation = -30.139602 kcal Electronic energy + Delta-G solvation = -23810.200242 eV Core-core repulsion = 20152.243124 eV Total energy + Delta-G solvation = -3657.957118 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.07433 -40.65610 -38.52930 -38.06414 -37.78429 -35.42141 -34.15782 -32.79341 -32.24988 -31.77255 -28.29379 -26.38615 -24.89161 -24.52783 -23.94327 -21.95167 -20.42314 -19.03931 -18.47744 -18.32320 -17.92666 -17.56685 -16.52178 -16.34083 -15.95668 -15.79858 -15.72417 -14.99376 -14.92385 -14.60220 -14.34483 -14.07425 -13.64145 -13.57635 -13.39199 -13.17116 -13.02762 -12.81615 -12.79086 -12.50208 -12.23941 -12.17460 -11.99841 -11.64962 -11.46673 -11.04347 -10.99539 -10.94292 -10.68304 -10.39241 -10.15119 -9.71845 -8.07370 -6.19716 -0.63066 -0.53194 0.48287 0.85628 1.18310 1.43053 1.44276 1.50854 1.76035 2.18900 2.44733 2.95315 3.15914 3.19912 3.33785 3.46609 3.81424 3.94050 4.07051 4.22739 4.31393 4.39589 4.50227 4.53569 4.61908 4.80541 4.92411 4.99712 5.15660 5.20146 5.37728 5.45436 5.63741 5.98512 6.10012 6.21904 6.37932 6.39597 6.80449 6.89114 7.48007 8.96153 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.015390 B = 0.004317 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.982284 B = 6483.862600 C = 6883.171248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.532 4.532 8 H 0.047 0.953 9 C 0.048 3.952 10 C -0.112 4.112 11 C 0.117 3.883 12 N -0.581 5.581 13 C 0.564 3.436 14 O -0.557 6.557 15 C -0.072 4.072 16 C -0.064 4.064 17 Cl -0.026 7.026 18 C 0.134 3.866 19 N -0.448 5.448 20 C 0.132 3.868 21 C -0.068 4.068 22 Cl -0.032 7.032 23 C 0.120 3.880 24 C -0.109 4.109 25 H 0.261 0.739 26 H 0.006 0.994 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.213 0.787 32 H 0.208 0.792 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.651 -12.281 -8.725 16.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.066 0.934 9 C 0.029 3.971 10 C -0.150 4.150 11 C -0.005 4.005 12 N -0.312 5.312 13 C 0.350 3.650 14 O -0.437 6.437 15 C -0.084 4.084 16 C -0.094 4.094 17 Cl 0.003 6.997 18 C -0.023 4.023 19 N -0.156 5.156 20 C -0.025 4.025 21 C -0.098 4.098 22 Cl -0.003 7.003 23 C -0.002 4.002 24 C -0.148 4.148 25 H 0.071 0.929 26 H 0.025 0.975 27 H 0.087 0.913 28 H 0.061 0.939 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.229 0.771 32 H 0.224 0.776 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.877 -12.615 -9.188 17.054 hybrid contribution 1.345 1.196 1.025 2.071 sum -5.532 -11.418 -8.163 15.087 Atomic orbital electron populations 1.69929 1.06755 1.27158 1.51204 1.25574 0.95616 1.01743 0.94871 0.85824 0.78584 0.79923 0.78566 1.20146 1.20933 1.19994 1.21475 0.92882 0.92104 1.50561 0.93421 1.18590 0.92968 0.91975 0.93560 1.21854 0.98306 0.93920 1.00969 1.21744 0.91732 0.98805 0.88197 1.48144 1.35677 1.20104 1.27241 1.18025 0.83014 0.82372 0.81610 1.90765 1.41303 1.36960 1.74661 1.20250 0.94617 0.98827 0.94749 1.22254 0.93772 1.01342 0.92041 1.98426 1.91322 1.80383 1.29613 1.23454 1.00065 0.93714 0.85109 1.67986 1.16971 1.08069 1.22613 1.23380 0.86548 0.93774 0.98780 1.22313 0.91550 1.01016 0.94912 1.98449 1.25281 1.80224 1.96356 1.21757 0.91133 0.85847 1.01484 1.21671 0.99366 0.95237 0.98521 0.92939 0.97541 0.91263 0.93861 0.90270 0.89602 0.77068 0.77574 0.90833 0.90938 0.90151 0.95025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.30 11.31 21.45 0.24 -49.06 16 2 C 0.02 1.11 5.30 84.65 0.45 1.56 16 3 Si 0.94 42.12 29.54 68.60 2.03 44.15 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.53 -27.92 8.56 25.60 0.22 -27.70 16 8 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 9 C 0.05 2.21 2.07 -11.51 -0.02 2.19 16 10 C -0.11 -4.44 5.30 30.67 0.16 -4.28 16 11 C 0.12 4.05 6.44 86.36 0.56 4.60 16 12 N -0.58 -20.09 2.98 -823.00 -2.45 -22.54 16 13 C 0.56 19.25 5.52 86.83 0.48 19.73 16 14 O -0.56 -21.96 16.52 -3.82 -0.06 -22.02 16 15 C -0.07 -2.05 3.67 -19.85 -0.07 -2.13 16 16 C -0.06 -1.50 6.38 22.70 0.14 -1.36 16 17 Cl -0.03 -0.61 28.17 -2.72 -0.08 -0.69 16 18 C 0.13 2.42 10.98 84.71 0.93 3.35 16 19 N -0.45 -8.67 10.33 -195.81 -2.02 -10.69 16 20 C 0.13 2.61 10.98 84.71 0.93 3.54 16 21 C -0.07 -1.74 6.24 22.71 0.14 -1.60 16 22 Cl -0.03 -0.90 28.17 -2.72 -0.08 -0.98 16 23 C 0.12 4.19 6.31 86.22 0.54 4.73 16 24 C -0.11 -4.72 5.14 30.53 0.16 -4.56 16 25 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 26 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.09 2.94 7.00 -2.39 -0.02 2.92 16 31 H 0.21 2.24 8.06 -2.91 -0.02 2.22 16 32 H 0.21 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.07 2.34 6.23 -2.39 -0.01 2.32 16 34 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 35 H 0.08 3.92 6.03 -2.38 -0.01 3.91 16 36 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -61.15 331.49 3.31 -57.83 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 1.12 Total: 5.92 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 4.62 Total: -1.92 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -4.23 Total: -82.30 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.06 Total: -22.02 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.15 Total: -1.66 kcal Total: -61.15 3.31 -57.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334177084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.693 kcal (2) G-P(sol) polarization free energy of solvation -61.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds