Wall clock time and date at job start Tue Mar 31 2020 15:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00202 * 2 1 4 4 C 1.53004 * 109.47573 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47181 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.46696 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.46785 * 180.02562 * 6 5 4 8 8 C 1.35655 * 116.99949 * 180.02562 * 7 6 5 9 9 C 1.38532 * 120.26827 * 269.97769 * 8 7 6 10 10 Br 1.89097 * 119.98371 * 0.04685 * 9 8 7 11 11 C 1.38372 * 120.03412 * 180.02562 * 9 8 7 12 12 C 1.38826 * 120.58178 * 0.03029 * 11 9 8 13 13 C 1.36485 * 120.54330 * 359.65880 * 12 11 9 14 14 C 1.40733 * 119.94508 * 0.61720 * 13 12 11 15 15 C 1.41158 * 120.28407 * 179.69184 * 14 13 12 16 16 H 1.08003 * 120.00006 * 149.99169 * 15 14 13 17 17 C 1.39934 * 119.99740 * 329.71721 * 15 14 13 18 18 N 1.30867 * 119.99976 * 161.88120 * 17 15 14 19 19 Si 1.86797 * 120.00225 * 341.88045 * 17 15 14 20 20 H 1.48502 * 109.47156 * 95.38568 * 19 17 15 21 21 H 1.48496 * 109.47404 * 215.39245 * 19 17 15 22 22 H 1.48505 * 109.47018 * 335.38997 * 19 17 15 23 23 H 1.08989 * 109.47034 * 299.99915 * 1 2 3 24 24 H 1.09002 * 109.46727 * 60.00513 * 1 2 3 25 25 H 1.09008 * 109.46868 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46997 * 59.99888 * 3 2 1 27 27 H 1.09001 * 109.46998 * 299.99973 * 3 2 1 28 28 H 1.09007 * 109.46601 * 60.00147 * 4 3 2 29 29 H 1.08994 * 109.47058 * 300.00478 * 4 3 2 30 30 H 1.08994 * 109.46777 * 60.00660 * 5 4 3 31 31 H 1.09001 * 109.47339 * 300.00120 * 5 4 3 32 32 H 1.09007 * 109.46696 * 60.00563 * 6 5 4 33 33 H 1.08994 * 109.47448 * 300.00598 * 6 5 4 34 34 H 1.07999 * 119.71058 * 179.97438 * 11 9 8 35 35 H 1.07998 * 119.72502 * 179.97438 * 12 11 9 36 36 H 1.07999 * 120.01959 * 180.30838 * 13 12 11 37 37 H 0.97000 * 120.00094 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6830 2.4615 0.0013 7 8 6.2642 3.7670 0.0013 8 6 7.6189 3.8380 0.0018 9 6 8.3157 3.8753 1.1986 10 35 7.3781 3.8257 2.8400 11 6 9.6975 3.9482 1.1935 12 6 10.3984 3.9854 -0.0043 13 6 9.7362 3.9436 -1.1970 14 6 8.3307 3.8753 -1.2182 15 6 7.6382 3.8383 -2.4477 16 1 6.6913 3.3238 -2.5189 17 6 8.1759 4.4732 -3.5728 18 7 7.7477 4.1587 -4.7688 19 14 9.5049 5.7698 -3.3677 20 1 10.8398 5.1409 -3.5340 21 1 9.3254 6.8291 -4.3928 22 1 9.4059 6.3702 -2.0131 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8574 0.6436 -0.8892 29 1 3.8568 0.6439 0.8908 30 1 3.8359 3.1237 0.8895 31 1 3.8365 3.1228 -0.8904 32 1 6.0052 1.9199 -0.8881 33 1 6.0039 1.9213 0.8918 34 1 10.2354 3.9774 2.1295 35 1 11.4768 4.0428 0.0079 36 1 10.2902 3.9681 -2.1237 37 1 8.1201 4.5990 -5.5487 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340056959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:24 Heat of formation + Delta-G solvation = -94.075204 kcal Electronic energy + Delta-G solvation = -19715.280942 eV Core-core repulsion = 16502.954861 eV Total energy + Delta-G solvation = -3212.326081 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.046 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.54500 -39.01063 -38.09603 -35.69027 -35.25861 -33.14604 -31.67666 -30.23989 -29.19611 -27.27909 -26.82151 -24.13441 -23.20346 -22.40565 -22.16604 -19.31910 -18.61410 -17.55343 -17.31476 -17.13835 -16.77352 -16.32192 -15.82767 -15.66927 -15.47952 -15.08749 -14.60199 -14.26287 -13.96922 -13.60653 -13.23932 -13.13469 -12.97241 -12.74089 -12.68900 -12.47215 -12.24895 -12.00469 -11.90720 -11.71250 -11.68862 -11.47447 -11.15510 -11.03056 -10.63246 -10.44877 -9.54182 -9.32165 -8.95960 -6.53616 0.41469 0.58422 0.84003 1.25053 1.39201 1.48037 2.08786 2.42785 2.63041 3.08215 3.42272 3.89158 3.97564 4.22738 4.24085 4.28966 4.41073 4.48445 4.52400 4.53790 4.54673 4.62273 4.67063 4.76592 4.81119 4.84391 4.93147 5.04256 5.16295 5.22761 5.29208 5.45277 5.63514 5.78889 5.98881 6.20910 6.21884 6.43842 6.67647 7.00165 8.11075 Molecular weight = 328.05amu Principal moments of inertia in cm(-1) A = 0.010193 B = 0.004969 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.204521 B = 5633.557487 C = 8075.132396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.065 3.935 4 C -0.108 4.108 5 C -0.100 4.100 6 C 0.067 3.933 7 O -0.326 6.326 8 C -0.002 4.002 9 C -0.069 4.069 10 Br -0.058 7.058 11 C -0.200 4.200 12 C -0.073 4.073 13 C -0.229 4.229 14 C 0.060 3.940 15 C -0.455 4.455 16 H 0.061 0.939 17 C 0.051 3.949 18 N -0.836 5.836 19 Si 0.960 3.040 20 H -0.248 1.248 21 H -0.277 1.277 22 H -0.255 1.255 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.097 0.903 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.026 0.974 33 H 0.050 0.950 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.111 0.889 37 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 -2.272 10.811 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.011 4.011 4 C -0.146 4.146 5 C -0.138 4.138 6 C -0.008 4.008 7 O -0.243 6.243 8 C -0.049 4.049 9 C -0.149 4.149 10 Br 0.028 6.972 11 C -0.221 4.221 12 C -0.091 4.091 13 C -0.248 4.248 14 C 0.056 3.944 15 C -0.483 4.483 16 H 0.079 0.921 17 C -0.166 4.166 18 N -0.461 5.461 19 Si 0.782 3.218 20 H -0.172 1.172 21 H -0.203 1.203 22 H -0.178 1.178 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.116 0.884 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.128 0.872 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.167 -2.322 11.122 12.481 hybrid contribution 0.355 0.375 -0.940 1.072 sum -4.812 -1.947 10.182 11.429 Atomic orbital electron populations 1.22937 0.79404 1.03869 1.00901 1.87822 1.21638 1.28769 1.95636 1.22500 0.92988 0.84402 1.01215 1.21303 0.93959 0.96109 1.03228 1.21259 0.91769 0.97376 1.03400 1.22639 0.94392 0.84518 0.99218 1.85907 1.16472 1.27933 1.94012 1.18671 0.82841 1.12569 0.90839 1.22199 0.95437 1.07567 0.89679 1.96458 1.77203 1.97723 1.25848 1.20698 0.90765 1.11712 0.98892 1.20804 1.00288 0.96800 0.91245 1.20973 0.93298 1.12194 0.98358 1.18117 0.92565 0.91365 0.92373 1.19267 1.06300 1.30376 0.92394 0.92125 1.26830 0.98104 0.98066 0.93576 1.69718 1.39649 1.36760 1.00005 0.85570 0.78631 0.78120 0.79441 1.17230 1.20299 1.17832 0.92917 0.93397 0.88409 0.91732 0.92772 0.92012 0.90588 0.89963 0.91788 0.95521 0.93184 0.84269 0.83664 0.87160 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.41 10.70 -148.98 -1.59 -12.00 16 3 C 0.07 1.52 5.94 71.98 0.43 1.95 16 4 C -0.11 -2.91 5.58 30.60 0.17 -2.74 16 5 C -0.10 -3.11 5.58 30.59 0.17 -2.94 16 6 C 0.07 2.59 5.90 71.98 0.42 3.02 16 7 O -0.33 -14.86 8.76 -89.71 -0.79 -15.65 16 8 C 0.00 -0.11 5.75 23.09 0.13 0.02 16 9 C -0.07 -2.85 6.23 22.37 0.14 -2.71 16 10 Br -0.06 -1.95 33.16 -20.37 -0.68 -2.63 16 11 C -0.20 -7.44 9.78 22.44 0.22 -7.22 16 12 C -0.07 -2.73 9.97 22.00 0.22 -2.52 16 13 C -0.23 -10.20 7.12 22.47 0.16 -10.04 16 14 C 0.06 3.00 5.10 -21.20 -0.11 2.89 16 15 C -0.45 -24.91 9.19 23.40 0.22 -24.69 16 16 H 0.06 3.62 7.23 -2.91 -0.02 3.60 16 17 C 0.05 2.62 5.40 85.25 0.46 3.08 16 18 N -0.84 -44.36 13.93 21.83 0.30 -44.06 16 19 Si 0.96 40.93 24.53 68.60 1.68 42.61 16 20 H -0.25 -9.64 6.71 99.48 0.67 -8.97 16 21 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.25 -11.26 6.87 99.48 0.68 -10.57 16 23 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.03 1.14 7.64 -2.38 -0.02 1.12 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 36 H 0.11 4.80 4.78 -2.91 -0.01 4.79 16 37 H 0.30 14.07 8.30 -92.71 -0.77 13.30 16 Total: -1.00 -59.32 329.82 3.81 -55.52 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.99 Total: 16.43 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 3.88 Total: -40.22 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.30 Total: -44.06 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -2.38 Total: -27.65 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.68 Total: 42.61 kcal Atomic # 35 Polarization: -1.95 SS G_CDS: -0.68 Total: -2.63 kcal Total: -59.32 3.81 -55.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340056959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.560 kcal (2) G-P(sol) polarization free energy of solvation -59.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds