Wall clock time and date at job start Tue Mar 31 2020 15:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00293 * 2 1 4 4 H 1.48503 * 109.47181 * 239.99825 * 3 2 1 5 5 H 1.48501 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47332 * 119.99803 * 3 2 1 7 7 C 1.37882 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99543 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46753 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47087 * 180.02562 * 10 9 7 12 12 S 1.81397 * 109.47166 * 179.97438 * 11 10 9 13 13 C 1.81401 * 102.99785 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47002 * 179.97438 * 13 12 11 15 15 C 1.38236 * 119.95156 * 89.99881 * 14 13 12 16 16 C 1.38647 * 120.08153 * 180.02562 * 15 14 13 17 17 C 1.39007 * 119.84556 * 359.86878 * 16 15 14 18 18 C 1.38659 * 119.83429 * 0.17716 * 17 16 15 19 19 C 1.38318 * 119.94947 * 269.72656 * 14 13 12 20 20 Cl 1.73598 * 119.95522 * 0.02694 * 19 14 13 21 21 O 1.36104 * 120.78326 * 180.23505 * 17 16 15 22 22 C 1.43175 * 116.69625 * 342.62625 * 21 17 16 23 23 C 1.53465 * 108.23698 * 46.28594 * 22 21 17 24 24 O 1.36142 * 119.39099 * 179.63875 * 16 15 14 25 25 H 0.97001 * 119.99667 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46963 * 60.00231 * 9 7 2 27 27 H 1.09000 * 109.47044 * 300.00531 * 9 7 2 28 28 H 1.08991 * 109.47570 * 59.99941 * 10 9 7 29 29 H 1.09000 * 109.47250 * 299.99483 * 10 9 7 30 30 H 1.09004 * 109.46969 * 59.99743 * 11 10 9 31 31 H 1.09000 * 109.46704 * 300.00247 * 11 10 9 32 32 H 1.09002 * 109.47085 * 299.99903 * 13 12 11 33 33 H 1.09001 * 109.47417 * 60.00029 * 13 12 11 34 34 H 1.08001 * 119.95587 * 359.97438 * 15 14 13 35 35 H 1.07993 * 119.97658 * 179.91882 * 18 17 16 36 36 H 1.09002 * 109.70744 * 165.97201 * 22 21 17 37 37 H 1.09000 * 109.70834 * 286.60003 * 22 21 17 38 38 H 1.09008 * 109.70757 * 59.94926 * 23 22 21 39 39 H 1.09002 * 109.71107 * 180.56537 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 16 2.6589 -6.3659 -0.0019 13 6 1.5805 -7.8246 -0.0019 14 6 2.4245 -9.0732 -0.0031 15 6 2.8119 -9.6455 1.1941 16 6 3.5887 -10.7939 1.1961 17 6 3.9749 -11.3700 -0.0086 18 6 3.5843 -10.7912 -1.2066 19 6 2.8055 -9.6479 -1.2021 20 17 2.3116 -8.9296 -2.7033 21 8 4.7334 -12.4999 -0.0289 22 6 5.4196 -12.8359 1.1820 23 6 4.4320 -12.6957 2.3483 24 8 3.9685 -11.3416 2.3832 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8896 28 1 2.8718 -3.6044 0.8893 29 1 2.8718 -3.6044 -0.8906 30 1 0.8537 -5.0446 -0.8914 31 1 0.8532 -5.0450 0.8886 32 1 0.9517 -7.8115 0.8884 33 1 0.9510 -7.8112 -0.8916 34 1 2.5097 -9.1971 2.1290 35 1 3.8841 -11.2361 -2.1438 36 1 5.7804 -13.8630 1.1272 37 1 6.2602 -12.1576 1.3285 38 1 3.5882 -13.3693 2.1985 39 1 4.9335 -12.9368 3.2856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342078953.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:52 Heat of formation + Delta-G solvation = -74.010263 kcal Electronic energy + Delta-G solvation = -21905.599813 eV Core-core repulsion = 18351.324370 eV Total energy + Delta-G solvation = -3554.275443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.68108 -38.66825 -37.68699 -36.45553 -34.42236 -32.86056 -31.99689 -31.18791 -29.66596 -27.55648 -26.87509 -24.78179 -23.44436 -23.07816 -21.03329 -20.18764 -19.04712 -17.88246 -17.68265 -16.45633 -16.05052 -15.76624 -15.55431 -15.16030 -15.06836 -14.84713 -14.55159 -14.51462 -14.30435 -13.93678 -13.50880 -13.11720 -12.75009 -12.53292 -12.40448 -12.33737 -11.70450 -11.65297 -11.53908 -11.10508 -10.97060 -10.91951 -10.83757 -10.78425 -10.51722 -9.80449 -9.76045 -9.28187 -9.11004 -8.92580 -8.34599 -8.30884 -7.38193 -5.99877 -4.02237 0.62419 0.79447 1.83679 1.99963 2.56014 2.82323 2.89424 3.28126 3.35124 3.38944 3.42154 3.72243 4.15705 4.30750 4.39005 4.44798 4.47070 4.54658 4.83619 4.88730 4.97904 5.03881 5.35239 5.35946 5.43777 5.48956 5.54759 5.67386 5.69581 5.87914 6.03763 6.16520 6.40844 6.58716 6.74940 6.93173 7.04759 7.65425 7.78052 7.99187 8.41211 9.03993 9.61724 11.11405 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.022715 B = 0.002167 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.351968 B =12918.623508 C =13579.197651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.094 4.094 11 C -0.075 4.075 12 S -0.258 6.258 13 C -0.055 4.055 14 C -0.050 4.050 15 C -0.085 4.085 16 C 0.057 3.943 17 C 0.062 3.938 18 C -0.105 4.105 19 C -0.018 4.018 20 Cl -0.045 7.045 21 O -0.304 6.304 22 C 0.020 3.980 23 C 0.020 3.980 24 O -0.302 6.302 25 H 0.261 0.739 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.054 -30.551 1.913 31.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.223 4.223 12 S -0.028 6.028 13 C -0.203 4.203 14 C -0.052 4.052 15 C -0.105 4.105 16 C 0.011 3.989 17 C 0.016 3.984 18 C -0.124 4.124 19 C -0.047 4.047 20 Cl -0.016 7.016 21 O -0.218 6.218 22 C -0.056 4.056 23 C -0.056 4.056 24 O -0.217 6.217 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.142 0.858 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.973 -30.354 1.809 31.435 hybrid contribution -0.811 0.736 -0.003 1.095 sum 7.163 -29.618 1.806 30.525 Atomic orbital electron populations 1.69955 1.06055 1.26751 1.50775 1.25024 0.94874 0.99284 0.95282 0.86631 0.79561 0.82982 0.78682 1.20195 1.21301 1.20197 1.21190 0.93092 0.90879 1.50725 0.92600 1.19098 0.93796 0.90822 0.97380 1.21459 0.99151 0.91139 1.01587 1.23659 0.98962 0.95277 1.04412 1.87098 1.17686 0.99934 1.98085 1.22269 0.98883 0.92675 1.06432 1.18830 0.99698 0.95793 0.90880 1.20219 0.97270 0.94467 0.98547 1.18815 0.99395 0.96491 0.84162 1.18592 0.97006 0.90034 0.92776 1.20136 1.00271 0.94913 0.97122 1.20333 1.01112 0.95593 0.87624 1.98393 1.89815 1.82706 1.30690 1.86314 1.60412 1.39013 1.36100 1.23687 0.94485 1.03861 0.83548 1.23671 0.98522 0.82246 1.01150 1.86357 1.80051 1.28021 1.27242 0.92931 0.96422 0.96447 0.92401 0.92373 0.90471 0.90499 0.88782 0.88453 0.83440 0.83543 0.85802 0.90140 0.90296 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.03 0.72 4.97 -27.88 -0.14 0.58 16 10 C -0.09 -1.99 5.16 -26.73 -0.14 -2.12 16 11 C -0.08 -1.30 5.94 37.16 0.22 -1.08 16 12 S -0.26 -4.05 21.72 -107.50 -2.33 -6.38 16 13 C -0.06 -0.68 5.67 36.01 0.20 -0.47 16 14 C -0.05 -0.59 5.14 -104.59 -0.54 -1.12 16 15 C -0.08 -0.94 9.61 -39.43 -0.38 -1.32 16 16 C 0.06 0.61 6.49 -39.15 -0.25 0.36 16 17 C 0.06 0.66 6.49 -39.14 -0.25 0.40 16 18 C -0.11 -1.11 9.74 -39.39 -0.38 -1.50 16 19 C -0.02 -0.21 6.31 -39.52 -0.25 -0.46 16 20 Cl -0.05 -0.53 27.27 -51.86 -1.41 -1.94 16 21 O -0.30 -2.80 10.42 -32.85 -0.34 -3.14 16 22 C 0.02 0.11 7.26 37.40 0.27 0.38 16 23 C 0.02 0.11 7.26 37.40 0.27 0.38 16 24 O -0.30 -2.91 10.42 -32.97 -0.34 -3.25 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 31 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 32 H 0.09 1.02 8.09 -51.92 -0.42 0.60 16 33 H 0.10 1.16 6.88 -51.92 -0.36 0.81 16 34 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 36 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 39 H 0.12 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -32.11 357.16 -10.51 -42.62 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -5.39 Total: -4.23 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -1.78 Total: -19.63 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.27 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.69 Total: -6.39 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -4.05 SS G_CDS: -2.33 Total: -6.38 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.41 Total: -1.94 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.11 -10.51 -42.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342078953.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.390 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds