Wall clock time and date at job start Tue Mar 31 2020 15:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00293 * 2 1 4 4 H 1.48503 * 109.47181 * 239.99825 * 3 2 1 5 5 H 1.48501 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47332 * 119.99803 * 3 2 1 7 7 C 1.37882 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99543 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46753 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47087 * 180.02562 * 10 9 7 12 12 S 1.81397 * 109.47166 * 179.97438 * 11 10 9 13 13 C 1.81401 * 102.99785 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47002 * 179.97438 * 13 12 11 15 15 C 1.38236 * 119.95156 * 89.99881 * 14 13 12 16 16 C 1.38647 * 120.08153 * 180.02562 * 15 14 13 17 17 C 1.39007 * 119.84556 * 359.86878 * 16 15 14 18 18 C 1.38659 * 119.83429 * 0.17716 * 17 16 15 19 19 C 1.38318 * 119.94947 * 269.72656 * 14 13 12 20 20 Cl 1.73598 * 119.95522 * 0.02694 * 19 14 13 21 21 O 1.36104 * 120.78326 * 180.23505 * 17 16 15 22 22 C 1.43175 * 116.69625 * 342.62625 * 21 17 16 23 23 C 1.53465 * 108.23698 * 46.28594 * 22 21 17 24 24 O 1.36142 * 119.39099 * 179.63875 * 16 15 14 25 25 H 0.97001 * 119.99667 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46963 * 60.00231 * 9 7 2 27 27 H 1.09000 * 109.47044 * 300.00531 * 9 7 2 28 28 H 1.08991 * 109.47570 * 59.99941 * 10 9 7 29 29 H 1.09000 * 109.47250 * 299.99483 * 10 9 7 30 30 H 1.09004 * 109.46969 * 59.99743 * 11 10 9 31 31 H 1.09000 * 109.46704 * 300.00247 * 11 10 9 32 32 H 1.09002 * 109.47085 * 299.99903 * 13 12 11 33 33 H 1.09001 * 109.47417 * 60.00029 * 13 12 11 34 34 H 1.08001 * 119.95587 * 359.97438 * 15 14 13 35 35 H 1.07993 * 119.97658 * 179.91882 * 18 17 16 36 36 H 1.09002 * 109.70744 * 165.97201 * 22 21 17 37 37 H 1.09000 * 109.70834 * 286.60003 * 22 21 17 38 38 H 1.09008 * 109.70757 * 59.94926 * 23 22 21 39 39 H 1.09002 * 109.71107 * 180.56537 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 16 2.6589 -6.3659 -0.0019 13 6 1.5805 -7.8246 -0.0019 14 6 2.4245 -9.0732 -0.0031 15 6 2.8119 -9.6455 1.1941 16 6 3.5887 -10.7939 1.1961 17 6 3.9749 -11.3700 -0.0086 18 6 3.5843 -10.7912 -1.2066 19 6 2.8055 -9.6479 -1.2021 20 17 2.3116 -8.9296 -2.7033 21 8 4.7334 -12.4999 -0.0289 22 6 5.4196 -12.8359 1.1820 23 6 4.4320 -12.6957 2.3483 24 8 3.9685 -11.3416 2.3832 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5570 0.8896 28 1 2.8718 -3.6044 0.8893 29 1 2.8718 -3.6044 -0.8906 30 1 0.8537 -5.0446 -0.8914 31 1 0.8532 -5.0450 0.8886 32 1 0.9517 -7.8115 0.8884 33 1 0.9510 -7.8112 -0.8916 34 1 2.5097 -9.1971 2.1290 35 1 3.8841 -11.2361 -2.1438 36 1 5.7804 -13.8630 1.1272 37 1 6.2602 -12.1576 1.3285 38 1 3.5882 -13.3693 2.1985 39 1 4.9335 -12.9368 3.2856 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342078953.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:51 Heat of formation + Delta-G solvation = -90.693970 kcal Electronic energy + Delta-G solvation = -21906.323273 eV Core-core repulsion = 18351.324370 eV Total energy + Delta-G solvation = -3554.998903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.36306 -39.44716 -38.35262 -37.31848 -36.34634 -34.03280 -33.65570 -31.87464 -30.34587 -29.41438 -27.79019 -25.56355 -25.15871 -23.98268 -22.16996 -21.56021 -19.74250 -18.59072 -18.57790 -18.33421 -17.12469 -16.65549 -16.52100 -16.37238 -16.19395 -15.89722 -15.63591 -15.50362 -15.13153 -15.06087 -14.46166 -14.20715 -14.09932 -14.01362 -13.49595 -13.34444 -13.08473 -13.06741 -12.74358 -12.70489 -12.40758 -12.06099 -11.94053 -11.77233 -11.63632 -11.56082 -11.37793 -11.16681 -10.86494 -10.55239 -9.75252 -9.12032 -8.62629 -8.20465 -6.31392 -0.26905 -0.02143 0.87528 0.98999 1.40572 1.43589 1.51538 1.64461 1.93709 2.22466 2.41467 2.45010 3.12656 3.15234 3.49321 3.58107 3.73124 3.96187 4.00970 4.06495 4.07244 4.12892 4.28823 4.45706 4.54440 4.54911 4.60733 4.62292 4.71124 4.83888 4.90521 4.99315 5.05309 5.14845 5.22435 5.49590 5.69544 5.76766 5.82944 6.23184 6.24317 6.83939 7.37463 8.90976 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.022715 B = 0.002167 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.351968 B =12918.623508 C =13579.197651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.080 4.080 11 C -0.069 4.069 12 S -0.275 6.275 13 C -0.042 4.042 14 C -0.062 4.062 15 C -0.089 4.089 16 C 0.053 3.947 17 C 0.063 3.937 18 C -0.110 4.110 19 C -0.025 4.025 20 Cl -0.051 7.051 21 O -0.315 6.315 22 C 0.013 3.987 23 C 0.013 3.987 24 O -0.317 6.317 25 H 0.264 0.736 26 H -0.004 1.004 27 H -0.002 1.002 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.366 -32.025 2.542 33.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.119 4.119 11 C -0.217 4.217 12 S -0.045 6.045 13 C -0.190 4.190 14 C -0.065 4.065 15 C -0.110 4.110 16 C 0.007 3.993 17 C 0.016 3.984 18 C -0.129 4.129 19 C -0.054 4.054 20 Cl -0.022 7.022 21 O -0.229 6.229 22 C -0.061 4.061 23 C -0.062 4.062 24 O -0.232 6.232 25 H 0.073 0.927 26 H 0.014 0.986 27 H 0.016 0.984 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.173 0.827 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.300 -31.839 2.444 33.259 hybrid contribution -1.164 0.982 -0.144 1.529 sum 8.136 -30.857 2.301 31.995 Atomic orbital electron populations 1.70080 1.07684 1.27887 1.51476 1.25966 0.95820 1.03294 0.94667 0.85507 0.78305 0.78110 0.79179 1.19279 1.20668 1.19176 1.21638 0.93525 0.92365 1.50839 0.92368 1.18974 0.94153 0.92321 0.95289 1.21156 0.98002 0.91565 1.01166 1.23378 0.98920 0.94539 1.04897 1.87090 1.18260 1.00943 1.98173 1.22282 0.98318 0.90897 1.07453 1.18792 1.00561 0.95802 0.91320 1.20345 0.97332 0.94741 0.98580 1.18893 0.99156 0.96458 0.84786 1.18689 0.96795 0.90286 0.92608 1.20295 1.00029 0.94726 0.97873 1.20423 1.01541 0.96064 0.87333 1.98388 1.89916 1.82865 1.31051 1.86303 1.60276 1.38168 1.38193 1.24049 0.94048 1.05850 0.82196 1.24043 0.99001 0.80355 1.02768 1.86334 1.80042 1.30114 1.26736 0.92695 0.98551 0.98404 0.92622 0.92850 0.90256 0.89826 0.87126 0.88140 0.82728 0.82386 0.82309 0.90102 0.89613 0.82657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 2 C 0.00 0.03 5.46 84.66 0.46 0.49 16 3 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.55 -31.64 9.11 25.60 0.23 -31.40 16 8 H 0.06 3.26 7.74 -2.92 -0.02 3.24 16 9 C 0.03 1.68 4.97 29.85 0.15 1.82 16 10 C -0.08 -3.42 5.16 30.60 0.16 -3.26 16 11 C -0.07 -2.40 5.94 71.98 0.43 -1.98 16 12 S -0.27 -8.46 21.72 -56.49 -1.23 -9.69 16 13 C -0.04 -1.00 5.67 71.24 0.40 -0.60 16 14 C -0.06 -1.42 5.14 -19.84 -0.10 -1.52 16 15 C -0.09 -1.90 9.61 22.37 0.22 -1.68 16 16 C 0.05 1.07 6.49 22.55 0.15 1.22 16 17 C 0.06 1.25 6.49 22.56 0.15 1.40 16 18 C -0.11 -2.23 9.74 22.39 0.22 -2.01 16 19 C -0.02 -0.55 6.31 22.31 0.14 -0.41 16 20 Cl -0.05 -1.17 27.27 -2.72 -0.07 -1.24 16 21 O -0.31 -5.20 10.42 -82.51 -0.86 -6.06 16 22 C 0.01 0.11 7.26 72.14 0.52 0.63 16 23 C 0.01 0.11 7.26 72.14 0.52 0.63 16 24 O -0.32 -5.56 10.42 -82.95 -0.86 -6.43 16 25 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 26 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 27 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.11 2.23 8.09 -2.39 -0.02 2.22 16 33 H 0.10 2.32 6.88 -2.39 -0.02 2.30 16 34 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.16 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.16 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -69.32 357.16 3.98 -65.33 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.05 Total: 4.55 kcal Atomic # 6 Polarization: -40.32 SS G_CDS: 3.65 Total: -36.67 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.28 Total: -56.66 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.72 Total: -12.48 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.23 Total: -9.69 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.07 Total: -1.24 kcal Total: -69.32 3.98 -65.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342078953.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.360 kcal (2) G-P(sol) polarization free energy of solvation -69.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds